RNA–Protein interactions for RNA: ENST00000461743.1

VPS52-213, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 3

Gene VPS52, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-213ENST00000461743 RBM25P49756 843 aaKnown RBP13.66□□□□□ -0.22
VPS52-213ENST00000461743 MNX1P50219 401 aaPredicted RBP13.66□□□□□ -0.22
VPS52-213ENST00000461743 NKX3-2P78367 333 aa13.66□□□□□ -0.22
VPS52-213ENST00000461743 PFKFB3Q16875 520 aaPredicted RBP13.66□□□□□ -0.22
VPS52-213ENST00000461743 ARHGEF16Q5VV41 709 aa13.66□□□□□ -0.22
VPS52-213ENST00000461743 IQSEC1Q6DN90 963 aa13.66□□□□□ -0.22
VPS52-213ENST00000461743 CPLX2Q6PUV4 134 aaKnown RBP13.66□□□□□ -0.22
VPS52-213ENST00000461743 HEATR3Q7Z4Q2 680 aa13.66□□□□□ -0.22
VPS52-213ENST00000461743 FBXO16Q8IX29 292 aaPredicted RBP13.66□□□□□ -0.22
VPS52-213ENST00000461743 FAM177A1Q8N128 213 aaPredicted RBP13.66□□□□□ -0.22
VPS52-213ENST00000461743 SCFD2Q8WU76 684 aa13.66□□□□□ -0.22
VPS52-213ENST00000461743 CCDC12Q8WUD4 166 aaPredicted RBP13.66□□□□□ -0.22
VPS52-213ENST00000461743 PIBF1Q8WXW3 757 aa13.66□□□□□ -0.22
VPS52-213ENST00000461743 C11orf49Q9H6J7 331 aa13.66□□□□□ -0.22
VPS52-213ENST00000461743 SPC25Q9HBM1 224 aa13.66□□□□□ -0.22
VPS52-213ENST00000461743 COL20A1Q9P218 1284 aa13.66□□□□□ -0.22
VPS52-213ENST00000461743 Q9Y3F1 56 aa13.66□□□□□ -0.22
VPS52-213ENST00000461743 SYNRGQ9UMZ2 1314 aa13.65□□□□□ -0.22
VPS52-213ENST00000461743 LTBP2Q14767 1821 aa13.65□□□□□ -0.22
VPS52-213ENST00000461743 ESYT2A0FGR8 921 aa13.65□□□□□ -0.22
VPS52-213ENST00000461743 PRPF3O43395 683 aaKnown RBP13.65□□□□□ -0.22
VPS52-213ENST00000461743 ADAMTS4O75173 837 aa13.65□□□□□ -0.22
VPS52-213ENST00000461743 STAM2O75886 525 aa13.65□□□□□ -0.22
VPS52-213ENST00000461743 CDKL5O76039 1030 aa13.65□□□□□ -0.22
VPS52-213ENST00000461743 ADD1P35611 737 aaKnown RBP13.65□□□□□ -0.22
VPS52-213ENST00000461743 GJA9P57773 515 aa13.65□□□□□ -0.22
VPS52-213ENST00000461743 AKAP17AQ02040 695 aaKnown RBP13.65□□□□□ -0.22
VPS52-213ENST00000461743 TNFAIP2Q03169 654 aa13.65□□□□□ -0.22
VPS52-213ENST00000461743 STXBP2Q15833 593 aa13.65□□□□□ -0.22
VPS52-213ENST00000461743 NTRK3Q16288 839 aa13.65□□□□□ -0.22
VPS52-213ENST00000461743 WWC2Q6AWC2 1192 aa13.65□□□□□ -0.22
VPS52-213ENST00000461743 TAPT1Q6NXT6 567 aa13.65□□□□□ -0.22
VPS52-213ENST00000461743 TRIM22Q8IYM9 498 aa13.65□□□□□ -0.22
VPS52-213ENST00000461743 CCDC82Q8N4S0 544 aa13.65□□□□□ -0.22
VPS52-213ENST00000461743 TBC1D5Q92609 795 aa13.65□□□□□ -0.22
VPS52-213ENST00000461743 PAWRQ96IZ0 340 aaKnown RBP13.65□□□□□ -0.22
VPS52-213ENST00000461743 PURBQ96QR8 312 aaKnown RBP13.65□□□□□ -0.22
VPS52-213ENST00000461743 TAAR1Q96RJ0 339 aa13.65□□□□□ -0.22
VPS52-213ENST00000461743 TSEN34Q9BSV6 310 aaKnown RBP13.65□□□□□ -0.22
VPS52-213ENST00000461743 BARHL2Q9NY43 387 aa13.65□□□□□ -0.22
VPS52-213ENST00000461743 WDR81Q562E7 1941 aa13.64□□□□□ -0.23
VPS52-213ENST00000461743 MOXD2PA6NHM9 499 aa13.64□□□□□ -0.23
VPS52-213ENST00000461743 STXBP3O00186 592 aa13.64□□□□□ -0.23
VPS52-213ENST00000461743 CPLX1O14810 134 aa13.64□□□□□ -0.23
VPS52-213ENST00000461743 SCG2P13521 617 aa13.64□□□□□ -0.23
VPS52-213ENST00000461743 EIF2AK2P19525 551 aaKnown RBP13.64□□□□□ -0.23
VPS52-213ENST00000461743 CCND2P30279 289 aa13.64□□□□□ -0.23
VPS52-213ENST00000461743 HOXA13P31271 388 aaPredicted RBP13.64□□□□□ -0.23
VPS52-213ENST00000461743 NAPAP54920 295 aa13.64□□□□□ -0.23
VPS52-213ENST00000461743 LRRC41Q15345 812 aa13.64□□□□□ -0.23
VPS52-213ENST00000461743 DUSP28Q4G0W2 176 aa13.64□□□□□ -0.23
VPS52-213ENST00000461743 XRRA1Q6P2D8 792 aa13.64□□□□□ -0.23
VPS52-213ENST00000461743 CCDC148Q8NFR7 591 aa13.64□□□□□ -0.23
VPS52-213ENST00000461743 SMARCC2Q8TAQ2 1214 aa13.64□□□□□ -0.23
VPS52-213ENST00000461743 GPKOWQ92917 476 aaPredicted RBP eCLIP13.64□□□□□ -0.23
VPS52-213ENST00000461743 PDCD2LQ9BRP1 358 aa13.64□□□□□ -0.23
VPS52-213ENST00000461743 C22orf23Q9BZE7 217 aa13.64□□□□□ -0.23
VPS52-213ENST00000461743 PSTPIP2Q9H939 334 aa13.64□□□□□ -0.23
VPS52-213ENST00000461743 EHMT1Q9H9B1 1298 aa13.64□□□□□ -0.23
VPS52-213ENST00000461743 GNEQ9Y223 722 aaKnown RBP13.64□□□□□ -0.23
VPS52-213ENST00000461743 STK36Q9NRP7 1315 aa13.64□□□□□ -0.23
VPS52-213ENST00000461743 MEIS2O14770 477 aa13.63□□□□□ -0.23
VPS52-213ENST00000461743 ADCY6O43306 1168 aa13.63□□□□□ -0.23
VPS52-213ENST00000461743 PFKFB2O60825 505 aa13.63□□□□□ -0.23
VPS52-213ENST00000461743 EIF3JO75822 258 aaKnown RBP13.63□□□□□ -0.23
VPS52-213ENST00000461743 NR3C2P08235 984 aa13.63□□□□□ -0.23
VPS52-213ENST00000461743 ADCYAP1R1P41586 468 aa13.63□□□□□ -0.23
VPS52-213ENST00000461743 AK2P54819 239 aa13.63□□□□□ -0.23
VPS52-213ENST00000461743 AP3B2Q13367 1082 aa13.63□□□□□ -0.23
VPS52-213ENST00000461743 TTLL4Q14679 1199 aa13.63□□□□□ -0.23
VPS52-213ENST00000461743 PGM5Q15124 567 aa13.63□□□□□ -0.23
VPS52-213ENST00000461743 MCTP2Q6DN12 878 aa13.63□□□□□ -0.23
VPS52-213ENST00000461743 KCNV1Q6PIU1 500 aa13.63□□□□□ -0.23
VPS52-213ENST00000461743 TLK2Q86UE8 772 aa13.63□□□□□ -0.23
VPS52-213ENST00000461743 PCSK9Q8NBP7 692 aaKnown RBP13.63□□□□□ -0.23
VPS52-213ENST00000461743 KLHDC9Q8NEP7 349 aa13.63□□□□□ -0.23
VPS52-213ENST00000461743 DIS3LQ8TF46 1054 aaKnown RBP13.63□□□□□ -0.23
VPS52-213ENST00000461743 RIC8AQ9NPQ8 531 aa13.63□□□□□ -0.23
VPS52-213ENST00000461743 PHF24Q9UPV7 400 aa13.63□□□□□ -0.23
VPS52-213ENST00000461743 V9GY48 417 aaPredicted RBP13.63□□□□□ -0.23
VPS52-213ENST00000461743 hCG_1642624A0A1W2PR95 340 aa13.62□□□□□ -0.23
VPS52-213ENST00000461743 SPDYE3A6NKU9 549 aa13.62□□□□□ -0.23
VPS52-213ENST00000461743 FOSP01100 380 aaPredicted RBP13.62□□□□□ -0.23
VPS52-213ENST00000461743 SMPD1P17405 629 aa13.62□□□□□ -0.23
VPS52-213ENST00000461743 ADCY7P51828 1080 aa13.62□□□□□ -0.23
VPS52-213ENST00000461743 NEK4P51957 841 aa13.62□□□□□ -0.23
VPS52-213ENST00000461743 CCT2P78371 535 aaKnown RBP13.62□□□□□ -0.23
VPS52-213ENST00000461743 C1orf53Q5VUE5 145 aa13.62□□□□□ -0.23
VPS52-213ENST00000461743 ANO1Q5XXA6 986 aa13.62□□□□□ -0.23
VPS52-213ENST00000461743 EEPD1Q7L9B9 569 aa13.62□□□□□ -0.23
VPS52-213ENST00000461743 VSIG10LQ86VR7 867 aa13.62□□□□□ -0.23
VPS52-213ENST00000461743 FCHSD1Q86WN1 690 aa13.62□□□□□ -0.23
VPS52-213ENST00000461743 LENG1Q96BZ8 264 aaPredicted RBP13.62□□□□□ -0.23
VPS52-213ENST00000461743 WDR11Q9BZH6 1224 aa13.62□□□□□ -0.23
VPS52-213ENST00000461743 AP5M1Q9H0R1 490 aa13.62□□□□□ -0.23
VPS52-213ENST00000461743 SLKQ9H2G2 1235 aaPredicted RBP13.62□□□□□ -0.23
VPS52-213ENST00000461743 NCOA5Q9HCD5 579 aaKnown RBP13.62□□□□□ -0.23
VPS52-213ENST00000461743 SH3GLB2Q9NR46 395 aa13.62□□□□□ -0.23
VPS52-213ENST00000461743 KAT6AQ92794 2004 aa13.62□□□□□ -0.23
VPS52-213ENST00000461743 C11orf97A0A1B0GVM6 126 aaPredicted RBP13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms