RNA–Protein interactions for RNA: ENST00000461409.1

HDAC9-220, Transcript of histone deacetylase 9, humanhuman

TSL 3

Gene HDAC9, Length 728 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-220ENST00000461409 ZNF697Q5TEC3 545 aa10.24□□□□□ -0.77
HDAC9-220ENST00000461409 CCSAPQ6IQ19 270 aaPredicted RBP10.24□□□□□ -0.77
HDAC9-220ENST00000461409 CCDC174Q6PII3 467 aa10.24□□□□□ -0.77
HDAC9-220ENST00000461409 SH3RF1Q7Z6J0 888 aa10.24□□□□□ -0.77
HDAC9-220ENST00000461409 CHMP4CQ96CF2 233 aa10.24□□□□□ -0.77
HDAC9-220ENST00000461409 FAM227BQ96M60 508 aa10.24□□□□□ -0.77
HDAC9-220ENST00000461409 LNPKQ9C0E8 428 aa10.24□□□□□ -0.77
HDAC9-220ENST00000461409 INCENPQ9NQS7 918 aa10.24□□□□□ -0.77
HDAC9-220ENST00000461409 PNMA2Q9UL42 364 aa10.24□□□□□ -0.77
HDAC9-220ENST00000461409 CCPG1Q9ULG6 757 aa10.24□□□□□ -0.77
HDAC9-220ENST00000461409 PRR12Q9ULL5 1215 aa10.24□□□□□ -0.77
HDAC9-220ENST00000461409 ZNF536O15090 1300 aa10.24□□□□□ -0.77
HDAC9-220ENST00000461409 SMCHD1A6NHR9 2005 aa10.23□□□□□ -0.77
HDAC9-220ENST00000461409 ICAM1P05362 532 aa10.23□□□□□ -0.77
HDAC9-220ENST00000461409 ASGR1P07306 291 aa10.23□□□□□ -0.77
HDAC9-220ENST00000461409 HSPD1P10809 573 aaKnown RBP10.23□□□□□ -0.77
HDAC9-220ENST00000461409 NT5C2P49902 561 aa10.23□□□□□ -0.77
HDAC9-220ENST00000461409 SMAD3P84022 425 aaKnown RBP10.23□□□□□ -0.77
HDAC9-220ENST00000461409 TNFAIP2Q03169 654 aa10.23□□□□□ -0.77
HDAC9-220ENST00000461409 FPGSQ05932 587 aa10.23□□□□□ -0.77
HDAC9-220ENST00000461409 RRP12Q5JTH9 1297 aaKnown RBP10.23□□□□□ -0.77
HDAC9-220ENST00000461409 C9orf50Q5SZB4 431 aa10.23□□□□□ -0.77
HDAC9-220ENST00000461409 NOL8Q76FK4 1167 aaKnown RBP10.23□□□□□ -0.77
HDAC9-220ENST00000461409 VTI1AQ96AJ9 217 aa10.23□□□□□ -0.77
HDAC9-220ENST00000461409 RNPC3Q96LT9 517 aaKnown RBP10.23□□□□□ -0.77
HDAC9-220ENST00000461409 KATNBL1Q9H079 304 aa10.23□□□□□ -0.77
HDAC9-220ENST00000461409 RNF41Q9H4P4 317 aaPredicted RBP10.23□□□□□ -0.77
HDAC9-220ENST00000461409 TCP11L1Q9NUJ3 509 aa10.23□□□□□ -0.77
HDAC9-220ENST00000461409 CYP39A1Q9NYL5 469 aa10.23□□□□□ -0.77
HDAC9-220ENST00000461409 MTMR7Q9Y216 660 aa10.23□□□□□ -0.77
HDAC9-220ENST00000461409 CCDC171Q6TFL3 1326 aa10.23□□□□□ -0.77
HDAC9-220ENST00000461409 CUL9Q8IWT3 2517 aa10.22□□□□□ -0.77
HDAC9-220ENST00000461409 LOC102724159A0A0B4J2E5 919 aa10.22□□□□□ -0.77
HDAC9-220ENST00000461409 A0A0U1RQG5 324 aaPredicted RBP10.22□□□□□ -0.77
HDAC9-220ENST00000461409 MYADML2A6NDP7 307 aa10.22□□□□□ -0.77
HDAC9-220ENST00000461409 TLR3O15455 904 aaKnown RBP10.22□□□□□ -0.77
HDAC9-220ENST00000461409 ZMYND10O75800 440 aa10.22□□□□□ -0.77
HDAC9-220ENST00000461409 CABYRO75952 493 aa10.22□□□□□ -0.77
HDAC9-220ENST00000461409 NKX3-2P78367 333 aa10.22□□□□□ -0.77
HDAC9-220ENST00000461409 FAAP100Q0VG06 881 aa10.22□□□□□ -0.77
HDAC9-220ENST00000461409 NMIQ13287 307 aaPredicted RBP10.22□□□□□ -0.77
HDAC9-220ENST00000461409 PWP2Q15269 919 aaKnown RBP10.22□□□□□ -0.77
HDAC9-220ENST00000461409 AKNAD1Q5T1N1 836 aa10.22□□□□□ -0.77
HDAC9-220ENST00000461409 SYDE2Q5VT97 1194 aa10.22□□□□□ -0.77
HDAC9-220ENST00000461409 BTNL9Q6UXG8 535 aa10.22□□□□□ -0.77
HDAC9-220ENST00000461409 MFSD6Q6ZSS7 791 aa10.22□□□□□ -0.77
HDAC9-220ENST00000461409 SMC5Q8IY18 1101 aa10.22□□□□□ -0.77
HDAC9-220ENST00000461409 RILPL2Q969X0 211 aa10.22□□□□□ -0.77
HDAC9-220ENST00000461409 TTC14Q96N46 770 aa10.22□□□□□ -0.77
HDAC9-220ENST00000461409 TMEM47Q9BQJ4 181 aa10.22□□□□□ -0.77
HDAC9-220ENST00000461409 SEZ6LQ9BYH1 1024 aa10.22□□□□□ -0.77
HDAC9-220ENST00000461409 AP5M1Q9H0R1 490 aa10.22□□□□□ -0.77
HDAC9-220ENST00000461409 RANBP17Q9H2T7 1088 aaKnown RBP10.22□□□□□ -0.77
HDAC9-220ENST00000461409 EIF4ENIF1Q9NRA8 985 aaKnown RBP10.22□□□□□ -0.77
HDAC9-220ENST00000461409 ADD3Q9UEY8 706 aaKnown RBP10.22□□□□□ -0.77
HDAC9-220ENST00000461409 TBX21Q9UL17 535 aa10.22□□□□□ -0.77
HDAC9-220ENST00000461409 TMEM265A0A087WTH1 108 aa10.21□□□□□ -0.77
HDAC9-220ENST00000461409 ARVCFO00192 962 aa10.21□□□□□ -0.77
HDAC9-220ENST00000461409 HIP1O00291 1037 aa10.21□□□□□ -0.77
HDAC9-220ENST00000461409 ADCY6O43306 1168 aa10.21□□□□□ -0.77
HDAC9-220ENST00000461409 ZEB2O60315 1214 aa10.21□□□□□ -0.77
HDAC9-220ENST00000461409 TIMP1P01033 207 aa10.21□□□□□ -0.77
HDAC9-220ENST00000461409 ITGB8P26012 769 aa10.21□□□□□ -0.77
HDAC9-220ENST00000461409 GCGRP47871 477 aa10.21□□□□□ -0.77
HDAC9-220ENST00000461409 CDK7P50613 346 aa10.21□□□□□ -0.77
HDAC9-220ENST00000461409 SNAP25P60880 206 aa10.21□□□□□ -0.77
HDAC9-220ENST00000461409 HAND2P61296 217 aa10.21□□□□□ -0.77
HDAC9-220ENST00000461409 FSCN1Q16658 493 aaKnown RBP10.21□□□□□ -0.77
HDAC9-220ENST00000461409 PUS10Q3MIT2 529 aaKnown RBP10.21□□□□□ -0.77
HDAC9-220ENST00000461409 MUM1L1Q5H9M0 696 aa10.21□□□□□ -0.77
HDAC9-220ENST00000461409 IQSEC1Q6DN90 963 aa10.21□□□□□ -0.77
HDAC9-220ENST00000461409 NSMFQ6X4W1 530 aa10.21□□□□□ -0.77
HDAC9-220ENST00000461409 TLK2Q86UE8 772 aa10.21□□□□□ -0.77
HDAC9-220ENST00000461409 ZNF589Q86UQ0 364 aaPredicted RBP10.21□□□□□ -0.77
HDAC9-220ENST00000461409 CHD1LQ86WJ1 897 aa10.21□□□□□ -0.77
HDAC9-220ENST00000461409 ESR2Q92731 530 aa10.21□□□□□ -0.77
HDAC9-220ENST00000461409 MPHOSPH6Q99547 160 aaKnown RBP10.21□□□□□ -0.77
HDAC9-220ENST00000461409 OSBPL3Q9H4L5 887 aa10.21□□□□□ -0.77
HDAC9-220ENST00000461409 VTA1Q9NP79 307 aa10.21□□□□□ -0.77
HDAC9-220ENST00000461409 Q9Y3F1 56 aa10.21□□□□□ -0.77
HDAC9-220ENST00000461409 UNC80Q8N2C7 3258 aa10.2□□□□□ -0.78
HDAC9-220ENST00000461409 NRG2O14511 850 aaPredicted RBP10.2□□□□□ -0.78
HDAC9-220ENST00000461409 ASTN1O14525 1302 aa10.2□□□□□ -0.78
HDAC9-220ENST00000461409 ZNF213O14771 459 aa10.2□□□□□ -0.78
HDAC9-220ENST00000461409 NR1I2O75469 434 aa10.2□□□□□ -0.78
HDAC9-220ENST00000461409 PDHBP11177 359 aa10.2□□□□□ -0.78
HDAC9-220ENST00000461409 CD46P15529 392 aa10.2□□□□□ -0.78
HDAC9-220ENST00000461409 SDSP20132 328 aa10.2□□□□□ -0.78
HDAC9-220ENST00000461409 SLC16A2P36021 539 aa10.2□□□□□ -0.78
HDAC9-220ENST00000461409 NUCB1Q02818 461 aa10.2□□□□□ -0.78
HDAC9-220ENST00000461409 ZNF543Q08ER8 600 aa10.2□□□□□ -0.78
HDAC9-220ENST00000461409 PPIGQ13427 754 aaKnown RBP eCLIP10.2□□□□□ -0.78
HDAC9-220ENST00000461409 CCDC178Q5BJE1 867 aa10.2□□□□□ -0.78
HDAC9-220ENST00000461409 GPATCH4Q5T3I0 446 aaKnown RBP10.2□□□□□ -0.78
HDAC9-220ENST00000461409 FRMPD2Q68DX3 1309 aaPredicted RBP10.2□□□□□ -0.78
HDAC9-220ENST00000461409 B4GALNT3Q6L9W6 998 aa10.2□□□□□ -0.78
HDAC9-220ENST00000461409 MFSD5Q6N075 450 aa10.2□□□□□ -0.78
HDAC9-220ENST00000461409 RASGRP2Q7LDG7 609 aa10.2□□□□□ -0.78
HDAC9-220ENST00000461409 FAM161BQ96MY7 647 aa10.2□□□□□ -0.78
HDAC9-220ENST00000461409 GUCD1Q96NT3 240 aa10.2□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms