RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 GDF3Q9NR23 364 aa12.95□□□□□ -0.34
CPSF3-202ENST00000460593 TMEM94Q12767 1356 aa12.95□□□□□ -0.34
CPSF3-202ENST00000460593 C21orf2O43822 256 aa12.95□□□□□ -0.34
CPSF3-202ENST00000460593 PAK2Q13177 524 aa12.95□□□□□ -0.34
CPSF3-202ENST00000460593 ZNF662Q6ZS27 426 aa12.95□□□□□ -0.34
CPSF3-202ENST00000460593 ZSCAN10Q96SZ4 725 aaPredicted RBP12.95□□□□□ -0.34
CPSF3-202ENST00000460593 TSGA10Q9BZW7 698 aa12.95□□□□□ -0.34
CPSF3-202ENST00000460593 NEUROG2Q9H2A3 272 aa12.95□□□□□ -0.34
CPSF3-202ENST00000460593 ATRNO75882 1429 aa12.95□□□□□ -0.34
CPSF3-202ENST00000460593 BYSLQ13895 437 aaKnown RBP12.95□□□□□ -0.34
CPSF3-202ENST00000460593 CATIPQ7Z7H3 387 aa12.95□□□□□ -0.34
CPSF3-202ENST00000460593 NOC3LQ8WTT2 800 aaKnown RBP12.95□□□□□ -0.34
CPSF3-202ENST00000460593 P2RX5Q93086 422 aa12.95□□□□□ -0.34
CPSF3-202ENST00000460593 PACSIN1Q9BY11 444 aa12.95□□□□□ -0.34
CPSF3-202ENST00000460593 LRP2BPQ9P2M1 347 aa12.95□□□□□ -0.34
CPSF3-202ENST00000460593 BAIAP2L1Q9UHR4 511 aa12.95□□□□□ -0.34
CPSF3-202ENST00000460593 SCN11AQ9UI33 1791 aa12.95□□□□□ -0.34
CPSF3-202ENST00000460593 DYNLL1P63167 89 aaKnown RBP12.94□□□□□ -0.34
CPSF3-202ENST00000460593 ASIC1P78348 528 aa12.94□□□□□ -0.34
CPSF3-202ENST00000460593 CFAP221Q4G0U5 840 aa12.94□□□□□ -0.34
CPSF3-202ENST00000460593 ANKRD20A8PQ5CZ79 823 aa12.94□□□□□ -0.34
CPSF3-202ENST00000460593 GIMAP8Q8ND71 665 aaPredicted RBP12.94□□□□□ -0.34
CPSF3-202ENST00000460593 SEC16BQ96JE7 1060 aa12.94□□□□□ -0.34
CPSF3-202ENST00000460593 MYH6P13533 1939 aa12.94□□□□□ -0.34
CPSF3-202ENST00000460593 LRP6O75581 1613 aa12.94□□□□□ -0.34
CPSF3-202ENST00000460593 USP54Q70EL1 1684 aa12.94□□□□□ -0.34
CPSF3-202ENST00000460593 CYP7A1P22680 504 aa12.94□□□□□ -0.34
CPSF3-202ENST00000460593 HSD17B3P37058 310 aa12.94□□□□□ -0.34
CPSF3-202ENST00000460593 UBA7P41226 1012 aa12.94□□□□□ -0.34
CPSF3-202ENST00000460593 SCTRP47872 440 aa12.94□□□□□ -0.34
CPSF3-202ENST00000460593 TROAPQ12815 778 aa12.94□□□□□ -0.34
CPSF3-202ENST00000460593 UAP1Q16222 522 aaPredicted RBP12.94□□□□□ -0.34
CPSF3-202ENST00000460593 WLSQ5T9L3 541 aa12.94□□□□□ -0.34
CPSF3-202ENST00000460593 C4orf32Q8N8J7 132 aa12.94□□□□□ -0.34
CPSF3-202ENST00000460593 AP1M1Q9BXS5 423 aa12.94□□□□□ -0.34
CPSF3-202ENST00000460593 GMNCA6NCL1 334 aa12.93□□□□□ -0.34
CPSF3-202ENST00000460593 BMP15O95972 392 aa12.93□□□□□ -0.34
CPSF3-202ENST00000460593 GCFC2P16383 781 aaKnown RBP12.93□□□□□ -0.34
CPSF3-202ENST00000460593 ARID4AP29374 1257 aaPredicted RBP12.93□□□□□ -0.34
CPSF3-202ENST00000460593 ERVK-9P63128 1117 aa12.93□□□□□ -0.34
CPSF3-202ENST00000460593 INF2Q27J81 1249 aa12.93□□□□□ -0.34
CPSF3-202ENST00000460593 ZNF572Q7Z3I7 529 aaPredicted RBP12.93□□□□□ -0.34
CPSF3-202ENST00000460593 YTHDF3Q7Z739 585 aaKnown RBP12.93□□□□□ -0.34
CPSF3-202ENST00000460593 TMTC2Q8N394 836 aa12.93□□□□□ -0.34
CPSF3-202ENST00000460593 ZBTB38Q8NAP3 1195 aaPredicted RBP12.93□□□□□ -0.34
CPSF3-202ENST00000460593 ESR2Q92731 530 aa12.93□□□□□ -0.34
CPSF3-202ENST00000460593 THOC1Q96FV9 657 aaKnown RBP12.93□□□□□ -0.34
CPSF3-202ENST00000460593 GGT7Q9UJ14 662 aa12.93□□□□□ -0.34
CPSF3-202ENST00000460593 NOVA2Q9UNW9 492 aaKnown RBP12.93□□□□□ -0.34
CPSF3-202ENST00000460593 PLAGL2Q9UPG8 496 aa12.93□□□□□ -0.34
CPSF3-202ENST00000460593 CNTNAP5Q8WYK1 1306 aa12.93□□□□□ -0.34
CPSF3-202ENST00000460593 IRS4O14654 1257 aaPredicted RBP12.93□□□□□ -0.34
CPSF3-202ENST00000460593 GLIS3Q8NEA6 775 aa12.93□□□□□ -0.34
CPSF3-202ENST00000460593 UBLCP1Q8WVY7 318 aaPredicted RBP12.93□□□□□ -0.34
CPSF3-202ENST00000460593 NUP58Q9BVL2 599 aa12.93□□□□□ -0.34
CPSF3-202ENST00000460593 TANGO6Q9C0B7 1094 aa12.93□□□□□ -0.34
CPSF3-202ENST00000460593 SEMA6BQ9H3T3 888 aa12.93□□□□□ -0.34
CPSF3-202ENST00000460593 TMBIM4Q9HC24 238 aa12.93□□□□□ -0.34
CPSF3-202ENST00000460593 L3MBTL1Q9Y468 752 aa12.93□□□□□ -0.34
CPSF3-202ENST00000460593 ATXN2Q99700 1313 aaKnown RBP12.93□□□□□ -0.34
CPSF3-202ENST00000460593 NID2Q14112 1375 aa12.93□□□□□ -0.34
CPSF3-202ENST00000460593 PLCG1P19174 1290 aa12.93□□□□□ -0.34
CPSF3-202ENST00000460593 KLRC1P26715 233 aa12.93□□□□□ -0.34
CPSF3-202ENST00000460593 GBP2P32456 591 aaPredicted RBP12.93□□□□□ -0.34
CPSF3-202ENST00000460593 CTSWP56202 376 aa12.93□□□□□ -0.34
CPSF3-202ENST00000460593 TMTC3Q6ZXV5 915 aa12.93□□□□□ -0.34
CPSF3-202ENST00000460593 SPATS2Q86XZ4 545 aaKnown RBP12.93□□□□□ -0.34
CPSF3-202ENST00000460593 RAPGEF5Q92565 580 aa12.93□□□□□ -0.34
CPSF3-202ENST00000460593 STAMBPL1Q96FJ0 436 aa12.93□□□□□ -0.34
CPSF3-202ENST00000460593 NOX5Q96PH1 765 aa12.93□□□□□ -0.34
CPSF3-202ENST00000460593 CTNNA1P35221 906 aaKnown RBP12.92□□□□□ -0.34
CPSF3-202ENST00000460593 LRRC41Q15345 812 aa12.92□□□□□ -0.34
CPSF3-202ENST00000460593 LRCH2Q5VUJ6 765 aa12.92□□□□□ -0.34
CPSF3-202ENST00000460593 HIBCHQ6NVY1 386 aaPredicted RBP12.92□□□□□ -0.34
CPSF3-202ENST00000460593 DTHD1Q6ZMT9 781 aa12.92□□□□□ -0.34
CPSF3-202ENST00000460593 SGSM3Q96HU1 749 aa12.92□□□□□ -0.34
CPSF3-202ENST00000460593 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP12.92□□□□□ -0.34
CPSF3-202ENST00000460593 GOLGA6L10A6NI86 522 aa12.92□□□□□ -0.34
CPSF3-202ENST00000460593 GCOM1H8Y6P7 765 aaPredicted RBP12.92□□□□□ -0.34
CPSF3-202ENST00000460593 RHOBTB3O94955 611 aa12.92□□□□□ -0.34
CPSF3-202ENST00000460593 UPP2O95045 317 aa12.92□□□□□ -0.34
CPSF3-202ENST00000460593 MYZAPP0CAP1 466 aa12.92□□□□□ -0.34
CPSF3-202ENST00000460593 CCNE1P24864 410 aa12.92□□□□□ -0.34
CPSF3-202ENST00000460593 ZNF844Q08AG5 666 aa12.92□□□□□ -0.34
CPSF3-202ENST00000460593 DNAJC10Q8IXB1 793 aa12.92□□□□□ -0.34
CPSF3-202ENST00000460593 TCP11Q8WWU5 503 aa12.92□□□□□ -0.34
CPSF3-202ENST00000460593 TRMT112Q9UI30 125 aaKnown RBP12.92□□□□□ -0.34
CPSF3-202ENST00000460593 SIK3Q9Y2K2 1263 aa12.92□□□□□ -0.34
CPSF3-202ENST00000460593 SCG2P13521 617 aa12.91□□□□□ -0.34
CPSF3-202ENST00000460593 PEX19P40855 299 aa12.91□□□□□ -0.34
CPSF3-202ENST00000460593 CCNHP51946 323 aaPredicted RBP12.91□□□□□ -0.34
CPSF3-202ENST00000460593 ITIH3Q06033 890 aa12.91□□□□□ -0.34
CPSF3-202ENST00000460593 PPP1R7Q15435 360 aa12.91□□□□□ -0.34
CPSF3-202ENST00000460593 CDC37Q16543 378 aaPredicted RBP12.91□□□□□ -0.34
CPSF3-202ENST00000460593 DYMQ7RTS9 669 aa12.91□□□□□ -0.34
CPSF3-202ENST00000460593 CACNA2D4Q7Z3S7 1137 aa12.91□□□□□ -0.34
CPSF3-202ENST00000460593 KIAA0895Q8NCT3 520 aa12.91□□□□□ -0.34
CPSF3-202ENST00000460593 HVCN1Q96D96 273 aa12.91□□□□□ -0.34
CPSF3-202ENST00000460593 TRIM31Q9BZY9 425 aa12.91□□□□□ -0.34
CPSF3-202ENST00000460593 NDST4Q9H3R1 872 aa12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms