RNA–Protein interactions for RNA: ENST00000458268.5

USP39-209, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 751 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-209ENST00000458268 POLR2MP0CAP2 368 aa21.59■■□□□ 1.05
USP39-209ENST00000458268 RPS6KB1P23443 525 aa21.59■■□□□ 1.05
USP39-209ENST00000458268 ACLYP53396 1101 aa21.59■■□□□ 1.05
USP39-209ENST00000458268 PPP2R5BQ15173 497 aa21.59■■□□□ 1.05
USP39-209ENST00000458268 TRIM60Q495X7 471 aa21.59■■□□□ 1.05
USP39-209ENST00000458268 IQSEC1Q6DN90 963 aa21.59■■□□□ 1.05
USP39-209ENST00000458268 MORC4Q8TE76 937 aa21.59■■□□□ 1.05
USP39-209ENST00000458268 KCNB2Q92953 911 aa21.59■■□□□ 1.05
USP39-209ENST00000458268 ZFP91Q96JP5 570 aaPredicted RBP21.59■■□□□ 1.05
USP39-209ENST00000458268 USP26Q9BXU7 913 aa21.59■■□□□ 1.05
USP39-209ENST00000458268 STARD7Q9NQZ5 370 aa21.59■■□□□ 1.05
USP39-209ENST00000458268 ASGR1P07306 291 aa21.58■■□□□ 1.05
USP39-209ENST00000458268 GJA9P57773 515 aa21.58■■□□□ 1.05
USP39-209ENST00000458268 HEATR3Q7Z4Q2 680 aa21.58■■□□□ 1.05
USP39-209ENST00000458268 PCSK9Q8NBP7 692 aaKnown RBP21.58■■□□□ 1.05
USP39-209ENST00000458268 OR6J1Q8NGC5 347 aa21.58■■□□□ 1.05
USP39-209ENST00000458268 GPKOWQ92917 476 aaPredicted RBP eCLIP21.58■■□□□ 1.05
USP39-209ENST00000458268 PXMP2Q9NR77 195 aa21.58■■□□□ 1.05
USP39-209ENST00000458268 RBM28Q9NW13 759 aaKnown RBP21.58■■□□□ 1.05
USP39-209ENST00000458268 PRKAG2Q9UGJ0 569 aa21.58■■□□□ 1.05
USP39-209ENST00000458268 COLQQ9Y215 455 aaPredicted RBP21.58■■□□□ 1.05
USP39-209ENST00000458268 KIAA1217Q5T5P2 1943 aa21.58■■□□□ 1.04
USP39-209ENST00000458268 METAP2P50579 478 aaKnown RBP eCLIP21.57■■□□□ 1.04
USP39-209ENST00000458268 HSD17B4P51659 736 aa21.57■■□□□ 1.04
USP39-209ENST00000458268 KLHDC9Q8NEP7 349 aa21.57■■□□□ 1.04
USP39-209ENST00000458268 SMARCC2Q8TAQ2 1214 aa21.57■■□□□ 1.04
USP39-209ENST00000458268 COPS5Q92905 334 aa21.57■■□□□ 1.04
USP39-209ENST00000458268 CUL5Q93034 780 aa21.57■■□□□ 1.04
USP39-209ENST00000458268 UPF3BQ9BZI7 483 aaKnown RBP21.57■■□□□ 1.04
USP39-209ENST00000458268 UPF3AQ9H1J1 476 aaKnown RBP21.57■■□□□ 1.04
USP39-209ENST00000458268 GNEQ9Y223 722 aaKnown RBP21.57■■□□□ 1.04
USP39-209ENST00000458268 LOC102724159A0A0B4J2E5 919 aa21.56■■□□□ 1.04
USP39-209ENST00000458268 PQBP1O60828 265 aaKnown RBP21.56■■□□□ 1.04
USP39-209ENST00000458268 TXNP10599 105 aaKnown RBP21.56■■□□□ 1.04
USP39-209ENST00000458268 EDNRBP24530 442 aa21.56■■□□□ 1.04
USP39-209ENST00000458268 PWP2Q15269 919 aaKnown RBP21.56■■□□□ 1.04
USP39-209ENST00000458268 STXBP2Q15833 593 aa21.56■■□□□ 1.04
USP39-209ENST00000458268 FSCN1Q16658 493 aaKnown RBP21.56■■□□□ 1.04
USP39-209ENST00000458268 SCFD2Q8WU76 684 aa21.56■■□□□ 1.04
USP39-209ENST00000458268 GLT1D1Q96MS3 346 aa21.56■■□□□ 1.04
USP39-209ENST00000458268 TSEN34Q9BSV6 310 aaKnown RBP21.56■■□□□ 1.04
USP39-209ENST00000458268 CNTNAP5Q8WYK1 1306 aa21.55■■□□□ 1.04
USP39-209ENST00000458268 MOXD2PA6NHM9 499 aa21.55■■□□□ 1.04
USP39-209ENST00000458268 SORBS3O60504 671 aa21.55■■□□□ 1.04
USP39-209ENST00000458268 PPFIA3O75145 1194 aa21.55■■□□□ 1.04
USP39-209ENST00000458268 NR3C2P08235 984 aa21.55■■□□□ 1.04
USP39-209ENST00000458268 MYL3P08590 195 aa21.55■■□□□ 1.04
USP39-209ENST00000458268 CHMP4BP1P59074 171 aa21.55■■□□□ 1.04
USP39-209ENST00000458268 TTLL4Q14679 1199 aa21.55■■□□□ 1.04
USP39-209ENST00000458268 DUSP28Q4G0W2 176 aa21.55■■□□□ 1.04
USP39-209ENST00000458268 USP17L6PQ6QN14 398 aa21.55■■□□□ 1.04
USP39-209ENST00000458268 CXCL17Q6UXB2 119 aa21.55■■□□□ 1.04
USP39-209ENST00000458268 LARP6Q9BRS8 491 aaKnown RBP21.55■■□□□ 1.04
USP39-209ENST00000458268 CYP46A1Q9Y6A2 500 aa21.55■■□□□ 1.04
USP39-209ENST00000458268 ZEB2O60315 1214 aa21.54■■□□□ 1.04
USP39-209ENST00000458268 CST5P28325 142 aaPredicted RBP21.54■■□□□ 1.04
USP39-209ENST00000458268 SMARCA1P28370 1054 aa21.54■■□□□ 1.04
USP39-209ENST00000458268 CDC27P30260 824 aa21.54■■□□□ 1.04
USP39-209ENST00000458268 MDM2Q00987 491 aaPredicted RBP21.54■■□□□ 1.04
USP39-209ENST00000458268 RUFY3Q7L099 469 aa21.54■■□□□ 1.04
USP39-209ENST00000458268 IL31RAQ8NI17 732 aa21.54■■□□□ 1.04
USP39-209ENST00000458268 IWS1Q96ST2 819 aa21.54■■□□□ 1.04
USP39-209ENST00000458268 MYH7BA7E2Y1 1941 aa21.53■■□□□ 1.04
USP39-209ENST00000458268 ARIH2O95376 493 aa21.53■■□□□ 1.04
USP39-209ENST00000458268 ADD1P35611 737 aaKnown RBP21.53■■□□□ 1.04
USP39-209ENST00000458268 NAPAP54920 295 aa21.53■■□□□ 1.04
USP39-209ENST00000458268 CCT2P78371 535 aaKnown RBP21.53■■□□□ 1.04
USP39-209ENST00000458268 TLE2Q04725 743 aa21.53■■□□□ 1.04
USP39-209ENST00000458268 PGM5Q15124 567 aa21.53■■□□□ 1.04
USP39-209ENST00000458268 LY6KQ17RY6 165 aa21.53■■□□□ 1.04
USP39-209ENST00000458268 CCSAPQ6IQ19 270 aaPredicted RBP21.53■■□□□ 1.04
USP39-209ENST00000458268 PDCD2LQ9BRP1 358 aa21.53■■□□□ 1.04
USP39-209ENST00000458268 MAF1Q9H063 256 aa21.53■■□□□ 1.04
USP39-209ENST00000458268 MRVI1Q9Y6F6 885 aa21.53■■□□□ 1.04
USP39-209ENST00000458268 V9GY48 417 aaPredicted RBP21.53■■□□□ 1.04
USP39-209ENST00000458268 CTAGE5O15320 804 aa21.52■■□□□ 1.04
USP39-209ENST00000458268 CCND2P30279 289 aa21.52■■□□□ 1.04
USP39-209ENST00000458268 MAGEA10P43363 369 aaPredicted RBP21.52■■□□□ 1.04
USP39-209ENST00000458268 UBE2SQ16763 222 aa21.52■■□□□ 1.04
USP39-209ENST00000458268 MAP3K20Q9NYL2 800 aaKnown RBP21.52■■□□□ 1.04
USP39-209ENST00000458268 RBM47A0AV96 593 aaKnown RBP21.51■■□□□ 1.03
USP39-209ENST00000458268 EPB41L2O43491 1005 aaKnown RBP21.51■■□□□ 1.03
USP39-209ENST00000458268 PSMC6P62333 389 aa21.51■■□□□ 1.03
USP39-209ENST00000458268 STK3Q13188 491 aa21.51■■□□□ 1.03
USP39-209ENST00000458268 WWC2Q6AWC2 1192 aa21.51■■□□□ 1.03
USP39-209ENST00000458268 LBHD1Q9BQE6 289 aaPredicted RBP21.51■■□□□ 1.03
USP39-209ENST00000458268 PSTPIP2Q9H939 334 aa21.51■■□□□ 1.03
USP39-209ENST00000458268 ZSWIM6Q9HCJ5 1215 aa21.51■■□□□ 1.03
USP39-209ENST00000458268 RBM27Q9P2N5 1060 aaKnown RBP21.51■■□□□ 1.03
USP39-209ENST00000458268 A0A0U1RQG5 324 aaPredicted RBP21.5■■□□□ 1.03
USP39-209ENST00000458268 CCDC196A0A1B0GTZ2 297 aa21.5■■□□□ 1.03
USP39-209ENST00000458268 EIF3JO75822 258 aaKnown RBP21.5■■□□□ 1.03
USP39-209ENST00000458268 CPT1AP50416 773 aa21.5■■□□□ 1.03
USP39-209ENST00000458268 GHRHRQ02643 423 aa21.5■■□□□ 1.03
USP39-209ENST00000458268 BRDTQ58F21 947 aaPredicted RBP21.5■■□□□ 1.03
USP39-209ENST00000458268 HABP4Q5JVS0 413 aaKnown RBP21.5■■□□□ 1.03
USP39-209ENST00000458268 SH3RF1Q7Z6J0 888 aa21.5■■□□□ 1.03
USP39-209ENST00000458268 SAMD3Q8N6K7 520 aa21.5■■□□□ 1.03
USP39-209ENST00000458268 PPP1R13LQ8WUF5 828 aa21.5■■□□□ 1.03
USP39-209ENST00000458268 NCOA5Q9HCD5 579 aaKnown RBP21.5■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 91.5 ms