RNA–Protein interactions for RNA: ENST00000451859.5

RFX3-209, Transcript of regulatory factor X3, human

TSL 3

Gene RFX3, Length 740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RFX3-209	ENST00000451859	SNHG28	P0DPA3	235 aa		10.14	□□□□□ -0.79
RFX3-209	ENST00000451859	ALDH5A1	P51649	535 aa	Predicted RBP	10.14	□□□□□ -0.79
RFX3-209	ENST00000451859	TNFAIP2	Q03169	654 aa		10.14	□□□□□ -0.79
RFX3-209	ENST00000451859	TRDN	Q13061	729 aa		10.14	□□□□□ -0.79
RFX3-209	ENST00000451859	SNX17	Q15036	470 aa		10.14	□□□□□ -0.79
RFX3-209	ENST00000451859	CDC37	Q16543	378 aa	Predicted RBP	10.14	□□□□□ -0.79
RFX3-209	ENST00000451859	CCDC178	Q5BJE1	867 aa		10.14	□□□□□ -0.79
RFX3-209	ENST00000451859	GNAS	Q5JWF2	1037 aa		10.14	□□□□□ -0.79
RFX3-209	ENST00000451859	TMEM63B	Q5T3F8	832 aa		10.14	□□□□□ -0.79
RFX3-209	ENST00000451859	GPATCH4	Q5T3I0	446 aa	Known RBP	10.14	□□□□□ -0.79
RFX3-209	ENST00000451859	IFIT1B	Q5T764	474 aa	Known RBP	10.14	□□□□□ -0.79
RFX3-209	ENST00000451859	RNF207	Q6ZRF8	634 aa		10.14	□□□□□ -0.79
RFX3-209	ENST00000451859	CYB5R4	Q7L1T6	521 aa		10.14	□□□□□ -0.79
RFX3-209	ENST00000451859	CHST3	Q7LGC8	479 aa		10.14	□□□□□ -0.79
RFX3-209	ENST00000451859	TLK2	Q86UE8	772 aa		10.14	□□□□□ -0.79
RFX3-209	ENST00000451859	KLHDC9	Q8NEP7	349 aa		10.14	□□□□□ -0.79
RFX3-209	ENST00000451859	CLEC4D	Q8WXI8	215 aa		10.14	□□□□□ -0.79
RFX3-209	ENST00000451859	BAD	Q92934	168 aa		10.14	□□□□□ -0.79
RFX3-209	ENST00000451859	GLT1D1	Q96MS3	346 aa		10.14	□□□□□ -0.79
RFX3-209	ENST00000451859	TAF6L	Q9Y6J9	622 aa		10.14	□□□□□ -0.79
RFX3-209	ENST00000451859	COL6A3	P12111	3177 aa		10.14	□□□□□ -0.79
RFX3-209	ENST00000451859	TRIM43B	A6NCK2	446 aa		10.13	□□□□□ -0.79
RFX3-209	ENST00000451859	MOXD2P	A6NHM9	499 aa		10.13	□□□□□ -0.79
RFX3-209	ENST00000451859	DYNC1LI2	O43237	492 aa	Predicted RBP	10.13	□□□□□ -0.79
RFX3-209	ENST00000451859	ASGR1	P07306	291 aa		10.13	□□□□□ -0.79
RFX3-209	ENST00000451859	CYP21A2	P08686	494 aa		10.13	□□□□□ -0.79
RFX3-209	ENST00000451859	CLTB	P09497	229 aa		10.13	□□□□□ -0.79
RFX3-209	ENST00000451859	SMPD1	P17405	629 aa		10.13	□□□□□ -0.79
RFX3-209	ENST00000451859	GJA9	P57773	515 aa		10.13	□□□□□ -0.79
RFX3-209	ENST00000451859	RPS6	P62753	249 aa	Known RBP	10.13	□□□□□ -0.79
RFX3-209	ENST00000451859	ASPRV1	Q53RT3	343 aa		10.13	□□□□□ -0.79
RFX3-209	ENST00000451859	PPP1R15B	Q5SWA1	713 aa		10.13	□□□□□ -0.79
RFX3-209	ENST00000451859	KIAA1211	Q6ZU35	1233 aa		10.13	□□□□□ -0.79
RFX3-209	ENST00000451859		Q7L0L9	218 aa		10.13	□□□□□ -0.79
RFX3-209	ENST00000451859	RALYL	Q86SE5	291 aa	Known RBP	10.13	□□□□□ -0.79
RFX3-209	ENST00000451859	ADGRF4	Q8IZF3	695 aa		10.13	□□□□□ -0.79
RFX3-209	ENST00000451859	PCSK9	Q8NBP7	692 aa	Known RBP	10.13	□□□□□ -0.79
RFX3-209	ENST00000451859	NUP133	Q8WUM0	1156 aa		10.13	□□□□□ -0.79
RFX3-209	ENST00000451859	ZDHHC16	Q969W1	377 aa		10.13	□□□□□ -0.79
RFX3-209	ENST00000451859	TRIM43	Q96BQ3	446 aa	Predicted RBP	10.13	□□□□□ -0.79
RFX3-209	ENST00000451859	TSEN34	Q9BSV6	310 aa	Known RBP	10.13	□□□□□ -0.79
RFX3-209	ENST00000451859	AP5M1	Q9H0R1	490 aa		10.13	□□□□□ -0.79
RFX3-209	ENST00000451859	UPF3A	Q9H1J1	476 aa	Known RBP	10.13	□□□□□ -0.79
RFX3-209	ENST00000451859	TMEM39A	Q9NV64	488 aa		10.13	□□□□□ -0.79
RFX3-209	ENST00000451859	ADD3	Q9UEY8	706 aa	Known RBP	10.13	□□□□□ -0.79
RFX3-209	ENST00000451859	WDR19	Q8NEZ3	1342 aa		10.12	□□□□□ -0.79
RFX3-209	ENST00000451859	DCDC2C	A8MYV0	355 aa		10.12	□□□□□ -0.79
RFX3-209	ENST00000451859	IFIT3	O14879	490 aa	Known RBP	10.12	□□□□□ -0.79
RFX3-209	ENST00000451859	SGSM2	O43147	1006 aa		10.12	□□□□□ -0.79
RFX3-209	ENST00000451859	RAG1	P15918	1043 aa		10.12	□□□□□ -0.79
RFX3-209	ENST00000451859	ITGB8	P26012	769 aa		10.12	□□□□□ -0.79
RFX3-209	ENST00000451859	PDE4D	Q08499	809 aa		10.12	□□□□□ -0.79
RFX3-209	ENST00000451859	FSCN1	Q16658	493 aa	Known RBP	10.12	□□□□□ -0.79
RFX3-209	ENST00000451859	QRICH1	Q2TAL8	776 aa		10.12	□□□□□ -0.79
RFX3-209	ENST00000451859	CCSAP	Q6IQ19	270 aa	Predicted RBP	10.12	□□□□□ -0.79
RFX3-209	ENST00000451859	CXCL17	Q6UXB2	119 aa		10.12	□□□□□ -0.79
RFX3-209	ENST00000451859	STAG2	Q8N3U4	1231 aa		10.12	□□□□□ -0.79
RFX3-209	ENST00000451859	ANKS1A	Q92625	1134 aa		10.12	□□□□□ -0.79
RFX3-209	ENST00000451859	SENP2	Q9HC62	589 aa		10.12	□□□□□ -0.79
RFX3-209	ENST00000451859	SCN10A	Q9Y5Y9	1956 aa		10.12	□□□□□ -0.79
RFX3-209	ENST00000451859	ERICH2	A1L162	156 aa		10.11	□□□□□ -0.79
RFX3-209	ENST00000451859		E7EWF7	191 aa		10.11	□□□□□ -0.79
RFX3-209	ENST00000451859	CTAGE5	O15320	804 aa		10.11	□□□□□ -0.79
RFX3-209	ENST00000451859	CST5	P28325	142 aa	Predicted RBP	10.11	□□□□□ -0.79
RFX3-209	ENST00000451859	SEC23A	Q15436	765 aa		10.11	□□□□□ -0.79
RFX3-209	ENST00000451859	SHH	Q15465	462 aa		10.11	□□□□□ -0.79
RFX3-209	ENST00000451859	C9orf50	Q5SZB4	431 aa		10.11	□□□□□ -0.79
RFX3-209	ENST00000451859	C1orf53	Q5VUE5	145 aa		10.11	□□□□□ -0.79
RFX3-209	ENST00000451859	TAPT1	Q6NXT6	567 aa		10.11	□□□□□ -0.79
RFX3-209	ENST00000451859	STOX1	Q6ZVD7	989 aa		10.11	□□□□□ -0.79
RFX3-209	ENST00000451859	HOMER1	Q86YM7	354 aa		10.11	□□□□□ -0.79
RFX3-209	ENST00000451859	NCOA7	Q8NI08	942 aa		10.11	□□□□□ -0.79
RFX3-209	ENST00000451859	PIBF1	Q8WXW3	757 aa		10.11	□□□□□ -0.79
RFX3-209	ENST00000451859	TBC1D5	Q92609	795 aa		10.11	□□□□□ -0.79
RFX3-209	ENST00000451859	MPHOSPH6	Q99547	160 aa	Known RBP	10.11	□□□□□ -0.79
RFX3-209	ENST00000451859	JMJD4	Q9H9V9	463 aa		10.11	□□□□□ -0.79
RFX3-209	ENST00000451859	VTA1	Q9NP79	307 aa		10.11	□□□□□ -0.79
RFX3-209	ENST00000451859	PNMA2	Q9UL42	364 aa		10.11	□□□□□ -0.79
RFX3-209	ENST00000451859	GNE	Q9Y223	722 aa	Known RBP	10.11	□□□□□ -0.79
RFX3-209	ENST00000451859	RBM8A	Q9Y5S9	174 aa	Known RBP	10.11	□□□□□ -0.79
RFX3-209	ENST00000451859	KAT6A	Q92794	2004 aa		10.11	□□□□□ -0.79
RFX3-209	ENST00000451859	TANC1	Q9C0D5	1861 aa		10.1	□□□□□ -0.79
RFX3-209	ENST00000451859	ABCB11	O95342	1321 aa		10.1	□□□□□ -0.79
RFX3-209	ENST00000451859		A0A0U1RQG5	324 aa	Predicted RBP	10.1	□□□□□ -0.79
RFX3-209	ENST00000451859	KLRF2	D3W0D1	207 aa		10.1	□□□□□ -0.79
RFX3-209	ENST00000451859	KIAA0355	O15063	1070 aa		10.1	□□□□□ -0.79
RFX3-209	ENST00000451859	NT5C2	P49902	561 aa		10.1	□□□□□ -0.79
RFX3-209	ENST00000451859	PSMC6	P62333	389 aa		10.1	□□□□□ -0.79
RFX3-209	ENST00000451859	FAAP100	Q0VG06	881 aa		10.1	□□□□□ -0.79
RFX3-209	ENST00000451859	WTAP	Q15007	396 aa		10.1	□□□□□ -0.79
RFX3-209	ENST00000451859	LRIT3	Q3SXY7	679 aa		10.1	□□□□□ -0.79
RFX3-209	ENST00000451859	TMEM67	Q5HYA8	995 aa		10.1	□□□□□ -0.79
RFX3-209	ENST00000451859	IQSEC1	Q6DN90	963 aa		10.1	□□□□□ -0.79
RFX3-209	ENST00000451859		Q6ZNB5	142 aa		10.1	□□□□□ -0.79
RFX3-209	ENST00000451859	FBXO11	Q86XK2	927 aa		10.1	□□□□□ -0.79
RFX3-209	ENST00000451859	OR6J1	Q8NGC5	347 aa		10.1	□□□□□ -0.79
RFX3-209	ENST00000451859	PPP1R13L	Q8WUF5	828 aa		10.1	□□□□□ -0.79
RFX3-209	ENST00000451859	WDR11	Q9BZH6	1224 aa		10.1	□□□□□ -0.79
RFX3-209	ENST00000451859	PPP1R12C	Q9BZL4	782 aa		10.1	□□□□□ -0.79
RFX3-209	ENST00000451859	COL20A1	Q9P218	1284 aa		10.1	□□□□□ -0.79

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