RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 PLCG1P19174 1290 aa8.19□□□□□ -1.1
SYNE1-213ENST00000448038 TGFB2P61812 414 aa8.19□□□□□ -1.1
SYNE1-213ENST00000448038 IFFO1Q0D2I5 559 aa8.19□□□□□ -1.1
SYNE1-213ENST00000448038 ANGEL2Q5VTE6 544 aaKnown RBP8.19□□□□□ -1.1
SYNE1-213ENST00000448038 PPP1R18Q6NYC8 613 aa8.19□□□□□ -1.1
SYNE1-213ENST00000448038 CLEC10AQ8IUN9 316 aa8.19□□□□□ -1.1
SYNE1-213ENST00000448038 SLC7A3Q8WY07 619 aa8.19□□□□□ -1.1
SYNE1-213ENST00000448038 NLRC4Q9NPP4 1024 aa8.19□□□□□ -1.1
SYNE1-213ENST00000448038 ZHX1Q9UKY1 873 aaPredicted RBP8.19□□□□□ -1.1
SYNE1-213ENST00000448038 PPP4CP60510 307 aa8.19□□□□□ -1.1
SYNE1-213ENST00000448038 CACNB1Q02641 598 aaPredicted RBP8.19□□□□□ -1.1
SYNE1-213ENST00000448038 ADAM9Q13443 819 aa8.19□□□□□ -1.1
SYNE1-213ENST00000448038 MCM6Q14566 821 aa8.19□□□□□ -1.1
SYNE1-213ENST00000448038 ARMCX5Q6P1M9 558 aa8.19□□□□□ -1.1
SYNE1-213ENST00000448038 SYT10Q6XYQ8 523 aa8.19□□□□□ -1.1
SYNE1-213ENST00000448038 SRBD1Q8N5C6 995 aaKnown RBP8.19□□□□□ -1.1
SYNE1-213ENST00000448038 FBXO41Q8TF61 875 aa8.19□□□□□ -1.1
SYNE1-213ENST00000448038 GJA10Q969M2 543 aa8.19□□□□□ -1.1
SYNE1-213ENST00000448038 EEF2KMTQ96G04 330 aa8.19□□□□□ -1.1
SYNE1-213ENST00000448038 ZFP91Q96JP5 570 aaPredicted RBP8.19□□□□□ -1.1
SYNE1-213ENST00000448038 TRERF1Q96PN7 1200 aa8.19□□□□□ -1.1
SYNE1-213ENST00000448038 RASA1P20936 1047 aa8.18□□□□□ -1.1
SYNE1-213ENST00000448038 RPS12P25398 132 aaKnown RBP8.18□□□□□ -1.1
SYNE1-213ENST00000448038 SMC1AQ14683 1233 aaKnown RBP8.18□□□□□ -1.1
SYNE1-213ENST00000448038 ARHGEF6Q15052 776 aa8.18□□□□□ -1.1
SYNE1-213ENST00000448038 AGBL3Q8NEM8 1001 aa8.18□□□□□ -1.1
SYNE1-213ENST00000448038 CEP170P1Q96L14 293 aa8.18□□□□□ -1.1
SYNE1-213ENST00000448038 AP5M1Q9H0R1 490 aa8.18□□□□□ -1.1
SYNE1-213ENST00000448038 RNF146Q9NTX7 359 aa8.18□□□□□ -1.1
SYNE1-213ENST00000448038 FBXO40Q9UH90 709 aa8.18□□□□□ -1.1
SYNE1-213ENST00000448038 HDLBPQ00341 1268 aaKnown RBP8.18□□□□□ -1.1
SYNE1-213ENST00000448038 SAMD7Q7Z3H4 446 aa8.18□□□□□ -1.1
SYNE1-213ENST00000448038 TMTC1Q8IUR5 882 aa8.18□□□□□ -1.1
SYNE1-213ENST00000448038 TMEM260Q9NX78 707 aa8.18□□□□□ -1.1
SYNE1-213ENST00000448038 GGA3Q9NZ52 723 aa8.18□□□□□ -1.1
SYNE1-213ENST00000448038 TAF6LQ9Y6J9 622 aa8.18□□□□□ -1.1
SYNE1-213ENST00000448038 LRMPQ12912 555 aa8.18□□□□□ -1.1
SYNE1-213ENST00000448038 ARHGAP44Q17R89 818 aa8.18□□□□□ -1.1
SYNE1-213ENST00000448038 TTBK2Q6IQ55 1244 aa8.18□□□□□ -1.1
SYNE1-213ENST00000448038 CCDC50Q8IVM0 306 aa8.18□□□□□ -1.1
SYNE1-213ENST00000448038 SMYD4Q8IYR2 804 aaPredicted RBP8.18□□□□□ -1.1
SYNE1-213ENST00000448038 HACE1Q8IYU2 909 aa8.18□□□□□ -1.1
SYNE1-213ENST00000448038 SCAF8Q9UPN6 1271 aaKnown RBP8.18□□□□□ -1.1
SYNE1-213ENST00000448038 ABCB11O95342 1321 aa8.18□□□□□ -1.1
SYNE1-213ENST00000448038 SLIT3O75094 1523 aa8.18□□□□□ -1.1
SYNE1-213ENST00000448038 HMGCS2P54868 508 aa8.18□□□□□ -1.1
SYNE1-213ENST00000448038 SLC8A3P57103 927 aa8.18□□□□□ -1.1
SYNE1-213ENST00000448038 DDR1Q08345 913 aa8.18□□□□□ -1.1
SYNE1-213ENST00000448038 KLHL30Q0D2K2 578 aa8.18□□□□□ -1.1
SYNE1-213ENST00000448038 DPCR1Q3MIW9 517 aa8.18□□□□□ -1.1
SYNE1-213ENST00000448038 LONRF3Q496Y0 759 aa8.18□□□□□ -1.1
SYNE1-213ENST00000448038 RRAGAQ7L523 313 aa8.18□□□□□ -1.1
SYNE1-213ENST00000448038 TTC16Q8NEE8 873 aa8.18□□□□□ -1.1
SYNE1-213ENST00000448038 CAPZA3Q96KX2 299 aa8.18□□□□□ -1.1
SYNE1-213ENST00000448038 ADPGKQ9BRR6 497 aa8.18□□□□□ -1.1
SYNE1-213ENST00000448038 CCDC113Q9H0I3 377 aa8.18□□□□□ -1.1
SYNE1-213ENST00000448038 HACL1Q9UJ83 578 aa8.18□□□□□ -1.1
SYNE1-213ENST00000448038 NFAT5O94916 1531 aa8.18□□□□□ -1.1
SYNE1-213ENST00000448038 GAP43P17677 238 aa8.17□□□□□ -1.1
SYNE1-213ENST00000448038 PTPREP23469 700 aa8.17□□□□□ -1.1
SYNE1-213ENST00000448038 SETQ01105 290 aaPredicted RBP8.17□□□□□ -1.1
SYNE1-213ENST00000448038 LSM14BQ9BX40 385 aaKnown RBP8.17□□□□□ -1.1
SYNE1-213ENST00000448038 RPAP3Q9H6T3 665 aaPredicted RBP8.17□□□□□ -1.1
SYNE1-213ENST00000448038 COBLO75128 1261 aa8.17□□□□□ -1.1
SYNE1-213ENST00000448038 PRPF6O94906 941 aaKnown RBP8.17□□□□□ -1.1
SYNE1-213ENST00000448038 PLA2G4BP0C869 781 aa8.17□□□□□ -1.1
SYNE1-213ENST00000448038 GUCY1A2P33402 732 aa8.17□□□□□ -1.1
SYNE1-213ENST00000448038 ANTXR2P58335 489 aa8.17□□□□□ -1.1
SYNE1-213ENST00000448038 ARHGAP4P98171 946 aa8.17□□□□□ -1.1
SYNE1-213ENST00000448038 PPP2R5AQ15172 486 aa8.17□□□□□ -1.1
SYNE1-213ENST00000448038 LRRC41Q15345 812 aa8.17□□□□□ -1.1
SYNE1-213ENST00000448038 TAF12Q16514 161 aa8.17□□□□□ -1.1
SYNE1-213ENST00000448038 SFMBT2Q5VUG0 894 aa8.17□□□□□ -1.1
SYNE1-213ENST00000448038 PRAMEF18Q5VWM3 479 aa8.17□□□□□ -1.1
SYNE1-213ENST00000448038 LEKR1Q6ZMV7 388 aa8.17□□□□□ -1.1
SYNE1-213ENST00000448038 TMEM39BQ9GZU3 492 aa8.17□□□□□ -1.1
SYNE1-213ENST00000448038 METTL14Q9HCE5 456 aaKnown RBP8.17□□□□□ -1.1
SYNE1-213ENST00000448038 NRXN3Q9Y4C0 1643 aa8.17□□□□□ -1.1
SYNE1-213ENST00000448038 A0A087WWV3 80 aa8.17□□□□□ -1.1
SYNE1-213ENST00000448038 MYL1P05976 194 aa8.17□□□□□ -1.1
SYNE1-213ENST00000448038 PSAPP07602 524 aa8.17□□□□□ -1.1
SYNE1-213ENST00000448038 CD19P15391 556 aa8.17□□□□□ -1.1
SYNE1-213ENST00000448038 ZNF543Q08ER8 600 aa8.17□□□□□ -1.1
SYNE1-213ENST00000448038 MTMR2Q13614 643 aa8.17□□□□□ -1.1
SYNE1-213ENST00000448038 JPH2Q9BR39 696 aaPredicted RBP8.17□□□□□ -1.1
SYNE1-213ENST00000448038 SPZ1Q9BXG8 430 aa8.17□□□□□ -1.1
SYNE1-213ENST00000448038 LRRC4BQ9NT99 713 aa8.17□□□□□ -1.1
SYNE1-213ENST00000448038 NYAP2Q9P242 653 aa8.17□□□□□ -1.1
SYNE1-213ENST00000448038 MAN1B1Q9UKM7 699 aa8.17□□□□□ -1.1
SYNE1-213ENST00000448038 NDUFB10O96000 172 aa8.17□□□□□ -1.1
SYNE1-213ENST00000448038 LMNB1P20700 586 aa8.17□□□□□ -1.1
SYNE1-213ENST00000448038 CTTNQ14247 550 aaKnown RBP8.17□□□□□ -1.1
SYNE1-213ENST00000448038 PDXDC2PQ6P474 469 aa8.17□□□□□ -1.1
SYNE1-213ENST00000448038 CEP112Q8N8E3 955 aa8.17□□□□□ -1.1
SYNE1-213ENST00000448038 POMGNT1Q8WZA1 660 aa8.17□□□□□ -1.1
SYNE1-213ENST00000448038 CCDC127Q96BQ5 260 aa8.17□□□□□ -1.1
SYNE1-213ENST00000448038 DISC1Q9NRI5 854 aa8.17□□□□□ -1.1
SYNE1-213ENST00000448038 CGNQ9P2M7 1197 aaKnown RBP8.17□□□□□ -1.1
SYNE1-213ENST00000448038 ANKFY1Q9P2R3 1169 aa8.17□□□□□ -1.1
SYNE1-213ENST00000448038 HNRNPDLO14979 420 aaKnown RBP8.17□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms