RNA–Protein interactions for RNA: ENST00000439669.5

CPNE1-217, Transcript of copine 1, humanhuman

TSL 5

Gene CPNE1, Length 784 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-217ENST00000439669 HOXA13P31271 388 aaPredicted RBP27.79■■■□□ 2.04
CPNE1-217ENST00000439669 DUSP28Q4G0W2 176 aa27.79■■■□□ 2.04
CPNE1-217ENST00000439669 HABP4Q5JVS0 413 aaKnown RBP27.79■■■□□ 2.04
CPNE1-217ENST00000439669 BLOC1S2Q6QNY1 142 aa27.79■■■□□ 2.04
CPNE1-217ENST00000439669 GLT1D1Q96MS3 346 aa27.79■■■□□ 2.04
CPNE1-217ENST00000439669 GCOM1H8Y6P7 765 aaPredicted RBP27.78■■■□□ 2.04
CPNE1-217ENST00000439669 CTAGE5O15320 804 aa27.78■■■□□ 2.04
CPNE1-217ENST00000439669 ZBTB43O43298 467 aa27.78■■■□□ 2.04
CPNE1-217ENST00000439669 POLR2MP0CAP2 368 aa27.78■■■□□ 2.04
CPNE1-217ENST00000439669 GHRHRQ02643 423 aa27.78■■■□□ 2.04
CPNE1-217ENST00000439669 PPP2R5BQ15173 497 aa27.78■■■□□ 2.04
CPNE1-217ENST00000439669 FSCN1Q16658 493 aaKnown RBP27.78■■■□□ 2.04
CPNE1-217ENST00000439669 TMTC3Q6ZXV5 915 aa27.78■■■□□ 2.04
CPNE1-217ENST00000439669 CCDC82Q8N4S0 544 aa27.78■■■□□ 2.04
CPNE1-217ENST00000439669 SAMD3Q8N6K7 520 aa27.78■■■□□ 2.04
CPNE1-217ENST00000439669 SCFD2Q8WU76 684 aa27.78■■■□□ 2.04
CPNE1-217ENST00000439669 VTI1AQ96AJ9 217 aa27.78■■■□□ 2.04
CPNE1-217ENST00000439669 IWS1Q96ST2 819 aa27.78■■■□□ 2.04
CPNE1-217ENST00000439669 PXMP2Q9NR77 195 aa27.78■■■□□ 2.04
CPNE1-217ENST00000439669 MAP3K20Q9NYL2 800 aaKnown RBP27.78■■■□□ 2.04
CPNE1-217ENST00000439669 PRKAG2Q9UGJ0 569 aa27.78■■■□□ 2.04
CPNE1-217ENST00000439669 BRPF3Q9ULD4 1205 aa27.78■■■□□ 2.04
CPNE1-217ENST00000439669 NAP1L2Q9ULW6 460 aaPredicted RBP27.78■■■□□ 2.04
CPNE1-217ENST00000439669 Q9Y3F1 56 aa27.78■■■□□ 2.04
CPNE1-217ENST00000439669 KLF18A0A0U1RQI7 1052 aa27.77■■■□□ 2.04
CPNE1-217ENST00000439669 RBM47A0AV96 593 aaKnown RBP27.77■■■□□ 2.04
CPNE1-217ENST00000439669 NKX3-2P78367 333 aa27.77■■■□□ 2.04
CPNE1-217ENST00000439669 C1orf53Q5VUE5 145 aa27.77■■■□□ 2.04
CPNE1-217ENST00000439669 PCDH10Q9P2E7 1040 aa27.77■■■□□ 2.04
CPNE1-217ENST00000439669 RBM27Q9P2N5 1060 aaKnown RBP27.77■■■□□ 2.04
CPNE1-217ENST00000439669 EPB41L2O43491 1005 aaKnown RBP27.76■■■□□ 2.03
CPNE1-217ENST00000439669 STXBP2Q15833 593 aa27.76■■■□□ 2.03
CPNE1-217ENST00000439669 RTN1Q16799 776 aa27.76■■■□□ 2.03
CPNE1-217ENST00000439669 PRDM5Q9NQX1 630 aaPredicted RBP27.76■■■□□ 2.03
CPNE1-217ENST00000439669 RBM28Q9NW13 759 aaKnown RBP27.76■■■□□ 2.03
CPNE1-217ENST00000439669 GOLGA8AA7E2F4 631 aa27.75■■■□□ 2.03
CPNE1-217ENST00000439669 GOLGA8BA8MQT2 603 aa27.75■■■□□ 2.03
CPNE1-217ENST00000439669 ZEB2O60315 1214 aa27.75■■■□□ 2.03
CPNE1-217ENST00000439669 PSMA5P28066 241 aa27.75■■■□□ 2.03
CPNE1-217ENST00000439669 MAGEA10P43363 369 aaPredicted RBP27.75■■■□□ 2.03
CPNE1-217ENST00000439669 SEPT14Q6ZU15 432 aa27.75■■■□□ 2.03
CPNE1-217ENST00000439669 Q6ZUG5 572 aa27.75■■■□□ 2.03
CPNE1-217ENST00000439669 FCHSD1Q86WN1 690 aa27.75■■■□□ 2.03
CPNE1-217ENST00000439669 OR6J1Q8NGC5 347 aa27.75■■■□□ 2.03
CPNE1-217ENST00000439669 hCG_1642624A0A1W2PR95 340 aa27.74■■■□□ 2.03
CPNE1-217ENST00000439669 PQBP1O60828 265 aaKnown RBP27.74■■■□□ 2.03
CPNE1-217ENST00000439669 NR3C2P08235 984 aa27.74■■■□□ 2.03
CPNE1-217ENST00000439669 CASTP20810 708 aaKnown RBP27.74■■■□□ 2.03
CPNE1-217ENST00000439669 TLE2Q04725 743 aa27.74■■■□□ 2.03
CPNE1-217ENST00000439669 TTLL4Q14679 1199 aa27.74■■■□□ 2.03
CPNE1-217ENST00000439669 CXCL17Q6UXB2 119 aa27.74■■■□□ 2.03
CPNE1-217ENST00000439669 ELP1O95163 1332 aa27.73■■■□□ 2.03
CPNE1-217ENST00000439669 NKRFO15226 690 aaKnown RBP eCLIP27.73■■■□□ 2.03
CPNE1-217ENST00000439669 TXNP10599 105 aaKnown RBP27.73■■■□□ 2.03
CPNE1-217ENST00000439669 RPS6KB1P23443 525 aa27.73■■■□□ 2.03
CPNE1-217ENST00000439669 BRF1Q92994 677 aa27.73■■■□□ 2.03
CPNE1-217ENST00000439669 GDF15Q99988 308 aa27.73■■■□□ 2.03
CPNE1-217ENST00000439669 PDCD2LQ9BRP1 358 aa27.73■■■□□ 2.03
CPNE1-217ENST00000439669 USP26Q9BXU7 913 aa27.73■■■□□ 2.03
CPNE1-217ENST00000439669 PRO3102Q9H379 93 aa27.73■■■□□ 2.03
CPNE1-217ENST00000439669 MYCLP12524 364 aaPredicted RBP27.72■■■□□ 2.03
CPNE1-217ENST00000439669 MDM2Q00987 491 aaPredicted RBP27.72■■■□□ 2.03
CPNE1-217ENST00000439669 APOBRQ0VD83 1088 aa27.72■■■□□ 2.03
CPNE1-217ENST00000439669 COPS5Q92905 334 aa27.72■■■□□ 2.03
CPNE1-217ENST00000439669 CUL5Q93034 780 aa27.72■■■□□ 2.03
CPNE1-217ENST00000439669 LBHD1Q9BQE6 289 aaPredicted RBP27.72■■■□□ 2.03
CPNE1-217ENST00000439669 CNTNAP5Q8WYK1 1306 aa27.71■■■□□ 2.03
CPNE1-217ENST00000439669 A0A0U1RQG5 324 aaPredicted RBP27.71■■■□□ 2.03
CPNE1-217ENST00000439669 EIF3JO75822 258 aaKnown RBP27.71■■■□□ 2.03
CPNE1-217ENST00000439669 ARIH2O95376 493 aa27.71■■■□□ 2.03
CPNE1-217ENST00000439669 PDLIM7Q9NR12 457 aa27.71■■■□□ 2.03
CPNE1-217ENST00000439669 CABYRO75952 493 aa27.7■■■□□ 2.02
CPNE1-217ENST00000439669 CLTBP09497 229 aa27.7■■■□□ 2.02
CPNE1-217ENST00000439669 CPT1AP50416 773 aa27.7■■■□□ 2.02
CPNE1-217ENST00000439669 RCAN1P53805 252 aa27.7■■■□□ 2.02
CPNE1-217ENST00000439669 PGM5Q15124 567 aa27.7■■■□□ 2.02
CPNE1-217ENST00000439669 HEATR3Q7Z4Q2 680 aa27.7■■■□□ 2.02
CPNE1-217ENST00000439669 IL31RAQ8NI17 732 aa27.7■■■□□ 2.02
CPNE1-217ENST00000439669 SMARCC2Q8TAQ2 1214 aa27.7■■■□□ 2.02
CPNE1-217ENST00000439669 DCDC2CA8MYV0 355 aa27.69■■■□□ 2.02
CPNE1-217ENST00000439669 METAP2P50579 478 aaKnown RBP eCLIP27.69■■■□□ 2.02
CPNE1-217ENST00000439669 BRDTQ58F21 947 aaPredicted RBP27.69■■■□□ 2.02
CPNE1-217ENST00000439669 MROH7Q68CQ1 1323 aa27.68■■■□□ 2.02
CPNE1-217ENST00000439669 ARVCFO00192 962 aa27.68■■■□□ 2.02
CPNE1-217ENST00000439669 MYL3P08590 195 aa27.68■■■□□ 2.02
CPNE1-217ENST00000439669 CDC27P30260 824 aa27.68■■■□□ 2.02
CPNE1-217ENST00000439669 CCND2P30279 289 aa27.68■■■□□ 2.02
CPNE1-217ENST00000439669 CCDC62Q6P9F0 684 aa27.68■■■□□ 2.02
CPNE1-217ENST00000439669 USP17L6PQ6QN14 398 aa27.68■■■□□ 2.02
CPNE1-217ENST00000439669 ANKRD33Q7Z3H0 272 aa27.68■■■□□ 2.02
CPNE1-217ENST00000439669 SH3RF1Q7Z6J0 888 aa27.68■■■□□ 2.02
CPNE1-217ENST00000439669 GPKOWQ92917 476 aaPredicted RBP eCLIP27.68■■■□□ 2.02
CPNE1-217ENST00000439669 UBE2OQ9C0C9 1292 aaKnown RBP27.68■■■□□ 2.02
CPNE1-217ENST00000439669 POLR3EQ9NVU0 708 aa27.68■■■□□ 2.02
CPNE1-217ENST00000439669 MRVI1Q9Y6F6 885 aa27.68■■■□□ 2.02
CPNE1-217ENST00000439669 BMP8BP34820 402 aa27.67■■■□□ 2.02
CPNE1-217ENST00000439669 LY6KQ17RY6 165 aa27.67■■■□□ 2.02
CPNE1-217ENST00000439669 RUFY3Q7L099 469 aa27.67■■■□□ 2.02
CPNE1-217ENST00000439669 VSIG10LQ86VR7 867 aa27.67■■■□□ 2.02
CPNE1-217ENST00000439669 TOX2Q96NM4 488 aa27.67■■■□□ 2.02
Retrieved 100 of 20,778 RNA–protein pairs in 76.4 ms