RNA–Protein interactions for RNA: ENST00000439160.6

TCOF1-205, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,644 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-205ENST00000439160 FMR1NBQ8N0W7 255 aaPredicted RBP13.56□□□□□ -0.24
TCOF1-205ENST00000439160 MSANTD4Q8NCY6 345 aa13.56□□□□□ -0.24
TCOF1-205ENST00000439160 POTEMA6NI47 508 aa13.56□□□□□ -0.24
TCOF1-205ENST00000439160 ZBTB5O15062 677 aa13.56□□□□□ -0.24
TCOF1-205ENST00000439160 NT5C2P49902 561 aa13.56□□□□□ -0.24
TCOF1-205ENST00000439160 RNF187Q5TA31 235 aaPredicted RBP13.56□□□□□ -0.24
TCOF1-205ENST00000439160 ARMCX5Q6P1M9 558 aa13.56□□□□□ -0.24
TCOF1-205ENST00000439160 NEDD1Q8NHV4 660 aa13.56□□□□□ -0.24
TCOF1-205ENST00000439160 BBXQ8WY36 941 aaPredicted RBP13.56□□□□□ -0.24
TCOF1-205ENST00000439160 FERMT1Q9BQL6 677 aa13.56□□□□□ -0.24
TCOF1-205ENST00000439160 NUCKS1Q9H1E3 243 aaKnown RBP13.56□□□□□ -0.24
TCOF1-205ENST00000439160 STK17AQ9UEE5 414 aa13.56□□□□□ -0.24
TCOF1-205ENST00000439160 GDAQ9Y2T3 454 aa13.56□□□□□ -0.24
TCOF1-205ENST00000439160 SEL1L2Q5TEA6 688 aa13.56□□□□□ -0.24
TCOF1-205ENST00000439160 CLEC10AQ8IUN9 316 aa13.56□□□□□ -0.24
TCOF1-205ENST00000439160 U2AF1L4Q8WU68 220 aaKnown RBP13.56□□□□□ -0.24
TCOF1-205ENST00000439160 DHTKD1Q96HY7 919 aaPredicted RBP13.56□□□□□ -0.24
TCOF1-205ENST00000439160 CCDC114Q96M63 670 aa13.56□□□□□ -0.24
TCOF1-205ENST00000439160 MXD3Q9BW11 206 aa13.56□□□□□ -0.24
TCOF1-205ENST00000439160 TRIM31Q9BZY9 425 aa13.56□□□□□ -0.24
TCOF1-205ENST00000439160 DAGLAQ9Y4D2 1042 aa13.56□□□□□ -0.24
TCOF1-205ENST00000439160 IKBKGQ9Y6K9 419 aa13.56□□□□□ -0.24
TCOF1-205ENST00000439160 DCCP43146 1447 aa13.55□□□□□ -0.24
TCOF1-205ENST00000439160 LRRIQ4A6NIV6 560 aa13.55□□□□□ -0.24
TCOF1-205ENST00000439160 RCAN1P53805 252 aa13.55□□□□□ -0.24
TCOF1-205ENST00000439160 USP14P54578 494 aa13.55□□□□□ -0.24
TCOF1-205ENST00000439160 FAM83BQ5T0W9 1011 aa13.55□□□□□ -0.24
TCOF1-205ENST00000439160 GBP6Q6ZN66 633 aa13.55□□□□□ -0.24
TCOF1-205ENST00000439160 SMAP1Q8IYB5 467 aaPredicted RBP13.55□□□□□ -0.24
TCOF1-205ENST00000439160 SRBD1Q8N5C6 995 aaKnown RBP13.55□□□□□ -0.24
TCOF1-205ENST00000439160 PLEKHA4Q9H4M7 779 aa13.55□□□□□ -0.24
TCOF1-205ENST00000439160 TMEM260Q9NX78 707 aa13.55□□□□□ -0.24
TCOF1-205ENST00000439160 MYO1AQ9UBC5 1043 aa13.55□□□□□ -0.24
TCOF1-205ENST00000439160 EPN1Q9Y6I3 576 aaPredicted RBP13.55□□□□□ -0.24
TCOF1-205ENST00000439160 RICTORQ6R327 1708 aa13.55□□□□□ -0.24
TCOF1-205ENST00000439160 F5H6K3 240 aa13.55□□□□□ -0.24
TCOF1-205ENST00000439160 TUBBP07437 444 aa13.55□□□□□ -0.24
TCOF1-205ENST00000439160 EZRP15311 586 aaKnown RBP13.55□□□□□ -0.24
TCOF1-205ENST00000439160 LIG4P49917 911 aa13.55□□□□□ -0.24
TCOF1-205ENST00000439160 KLRC3Q07444 240 aa13.55□□□□□ -0.24
TCOF1-205ENST00000439160 GRM4Q14833 912 aa13.55□□□□□ -0.24
TCOF1-205ENST00000439160 CLEC17AQ6ZS10 378 aa13.55□□□□□ -0.24
TCOF1-205ENST00000439160 CRAMP1Q96RY5 1269 aa13.55□□□□□ -0.24
TCOF1-205ENST00000439160 SH3GLB2Q9NR46 395 aa13.55□□□□□ -0.24
TCOF1-205ENST00000439160 CNTNAP4Q9C0A0 1308 aa13.55□□□□□ -0.24
TCOF1-205ENST00000439160 EEPD1Q7L9B9 569 aa13.55□□□□□ -0.24
TCOF1-205ENST00000439160 FKBP3Q00688 224 aaKnown RBP13.54□□□□□ -0.24
TCOF1-205ENST00000439160 CUL4BQ13620 913 aa13.54□□□□□ -0.24
TCOF1-205ENST00000439160 KMT5BQ4FZB7 885 aa13.54□□□□□ -0.24
TCOF1-205ENST00000439160 FBXO33Q7Z6M2 555 aa13.54□□□□□ -0.24
TCOF1-205ENST00000439160 CDAN1Q8IWY9 1227 aa13.54□□□□□ -0.24
TCOF1-205ENST00000439160 KLHL7Q8IXQ5 586 aa13.54□□□□□ -0.24
TCOF1-205ENST00000439160 WDR11Q9BZH6 1224 aa13.54□□□□□ -0.24
TCOF1-205ENST00000439160 PNMA2Q9UL42 364 aa13.54□□□□□ -0.24
TCOF1-205ENST00000439160 ZNF215Q9UL58 517 aaPredicted RBP13.54□□□□□ -0.24
TCOF1-205ENST00000439160 CLIC2O15247 247 aa13.54□□□□□ -0.24
TCOF1-205ENST00000439160 POLGP54098 1239 aaPredicted RBP13.54□□□□□ -0.24
TCOF1-205ENST00000439160 RBL2Q08999 1139 aa13.54□□□□□ -0.24
TCOF1-205ENST00000439160 PEX26Q7Z412 305 aa13.54□□□□□ -0.24
TCOF1-205ENST00000439160 VPS18Q9P253 973 aa13.54□□□□□ -0.24
TCOF1-205ENST00000439160 NCOA3Q9Y6Q9 1424 aa13.54□□□□□ -0.24
TCOF1-205ENST00000439160 PLA2G4BP0C869 781 aa13.54□□□□□ -0.24
TCOF1-205ENST00000439160 EEF1GP26641 437 aaKnown RBP13.54□□□□□ -0.24
TCOF1-205ENST00000439160 CALCOCO2Q13137 446 aa13.54□□□□□ -0.24
TCOF1-205ENST00000439160 RPS6KA1Q15418 735 aa13.54□□□□□ -0.24
TCOF1-205ENST00000439160 PPM1KQ8N3J5 372 aa13.54□□□□□ -0.24
TCOF1-205ENST00000439160 BHMT2Q9H2M3 363 aa13.54□□□□□ -0.24
TCOF1-205ENST00000439160 METTL14Q9HCE5 456 aaKnown RBP13.54□□□□□ -0.24
TCOF1-205ENST00000439160 SLIT1O75093 1534 aa13.54□□□□□ -0.24
TCOF1-205ENST00000439160 OPA1O60313 960 aa13.54□□□□□ -0.24
TCOF1-205ENST00000439160 CA8P35219 290 aa13.54□□□□□ -0.24
TCOF1-205ENST00000439160 KCTD2Q14681 263 aa13.54□□□□□ -0.24
TCOF1-205ENST00000439160 ERCC6LQ2NKX8 1250 aa13.54□□□□□ -0.24
TCOF1-205ENST00000439160 USTQ9Y2C2 406 aa13.54□□□□□ -0.24
TCOF1-205ENST00000439160 SBDSQ9Y3A5 250 aaKnown RBP eCLIP13.54□□□□□ -0.24
TCOF1-205ENST00000439160 SAR1BQ9Y6B6 198 aa13.54□□□□□ -0.24
TCOF1-205ENST00000439160 FER1L4A9Z1Z3 1794 aa13.53□□□□□ -0.24
TCOF1-205ENST00000439160 FAM205CA6NFA0 338 aa13.53□□□□□ -0.24
TCOF1-205ENST00000439160 PP2D1A8MPX8 630 aa13.53□□□□□ -0.24
TCOF1-205ENST00000439160 BUB1O43683 1085 aa13.53□□□□□ -0.24
TCOF1-205ENST00000439160 DMP1Q13316 513 aaPredicted RBP13.53□□□□□ -0.24
TCOF1-205ENST00000439160 ARID5BQ14865 1188 aa13.53□□□□□ -0.24
TCOF1-205ENST00000439160 CFAP58Q5T655 872 aa13.53□□□□□ -0.24
TCOF1-205ENST00000439160 TRAF3IP1Q8TDR0 691 aaPredicted RBP13.53□□□□□ -0.24
TCOF1-205ENST00000439160 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP13.53□□□□□ -0.24
TCOF1-205ENST00000439160 ARHGAP23Q9P227 1491 aa13.53□□□□□ -0.24
TCOF1-205ENST00000439160 EXOC3L4Q17RC7 722 aa13.53□□□□□ -0.24
TCOF1-205ENST00000439160 SEPT14Q6ZU15 432 aa13.53□□□□□ -0.24
TCOF1-205ENST00000439160 IQCDQ96DY2 449 aa13.53□□□□□ -0.24
TCOF1-205ENST00000439160 OGFRQ9NZT2 677 aa13.53□□□□□ -0.24
TCOF1-205ENST00000439160 KDM4FA0A1W2PPD8 638 aa13.53□□□□□ -0.24
TCOF1-205ENST00000439160 A0A1W2PRG0 241 aa13.53□□□□□ -0.24
TCOF1-205ENST00000439160 HNRNPDLO14979 420 aaKnown RBP13.53□□□□□ -0.24
TCOF1-205ENST00000439160 CCNE1P24864 410 aa13.53□□□□□ -0.24
TCOF1-205ENST00000439160 CTTNQ14247 550 aaKnown RBP13.53□□□□□ -0.24
TCOF1-205ENST00000439160 SHC4Q6S5L8 630 aa13.53□□□□□ -0.24
TCOF1-205ENST00000439160 FAM160B2Q86V87 743 aa13.53□□□□□ -0.24
TCOF1-205ENST00000439160 ZNF354CQ86Y25 554 aa13.53□□□□□ -0.24
TCOF1-205ENST00000439160 CCDC26Q8TAB7 109 aa13.53□□□□□ -0.24
TCOF1-205ENST00000439160 GOLGA5Q8TBA6 731 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms