RNA–Protein interactions for RNA: ENST00000437564.5

MCF2-205, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MCF2, Length 1,988 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-205ENST00000437564 TMA7Q9Y2S6 64 aaKnown RBP7.13□□□□□ -1.27
MCF2-205ENST00000437564 ZDHHC9Q9Y397 364 aa7.13□□□□□ -1.27
MCF2-205ENST00000437564 SPATA31E1Q6ZUB1 1445 aa7.13□□□□□ -1.27
MCF2-205ENST00000437564 USP27XA6NNY8 438 aa7.13□□□□□ -1.27
MCF2-205ENST00000437564 HAT1O14929 419 aa7.13□□□□□ -1.27
MCF2-205ENST00000437564 PAHP00439 452 aa7.13□□□□□ -1.27
MCF2-205ENST00000437564 PRLRP16471 622 aa7.13□□□□□ -1.27
MCF2-205ENST00000437564 EIF2S2P20042 333 aaKnown RBP7.13□□□□□ -1.27
MCF2-205ENST00000437564 IBSPP21815 317 aaPredicted RBP7.13□□□□□ -1.27
MCF2-205ENST00000437564 CCND1P24385 295 aa7.13□□□□□ -1.27
MCF2-205ENST00000437564 VARSP26640 1264 aaKnown RBP7.13□□□□□ -1.27
MCF2-205ENST00000437564 RFC5P40937 340 aa7.13□□□□□ -1.27
MCF2-205ENST00000437564 MXI1P50539 228 aa7.13□□□□□ -1.27
MCF2-205ENST00000437564 USP46P62068 366 aa7.13□□□□□ -1.27
MCF2-205ENST00000437564 UBE2HP62256 183 aa7.13□□□□□ -1.27
MCF2-205ENST00000437564 CYP4A11Q02928 519 aa7.13□□□□□ -1.27
MCF2-205ENST00000437564 GNL2Q13823 731 aaKnown RBP7.13□□□□□ -1.27
MCF2-205ENST00000437564 CASP8Q14790 479 aa7.13□□□□□ -1.27
MCF2-205ENST00000437564 WDR43Q15061 677 aaKnown RBP eCLIP7.13□□□□□ -1.27
MCF2-205ENST00000437564 LACTB2Q53H82 288 aaPredicted RBP7.13□□□□□ -1.27
MCF2-205ENST00000437564 FAM209AQ5JX71 171 aa7.13□□□□□ -1.27
MCF2-205ENST00000437564 ZNF746Q6NUN9 644 aaPredicted RBP7.13□□□□□ -1.27
MCF2-205ENST00000437564 VPS36Q86VN1 386 aa7.13□□□□□ -1.27
MCF2-205ENST00000437564 OSTM1Q86WC4 334 aa7.13□□□□□ -1.27
MCF2-205ENST00000437564 FCHSD1Q86WN1 690 aa7.13□□□□□ -1.27
MCF2-205ENST00000437564 VPS52Q8N1B4 723 aa7.13□□□□□ -1.27
MCF2-205ENST00000437564 TBC1D20Q96BZ9 403 aa7.13□□□□□ -1.27
MCF2-205ENST00000437564 MED30Q96HR3 178 aa7.13□□□□□ -1.27
MCF2-205ENST00000437564 L3MBTL3Q96JM7 780 aaPredicted RBP7.13□□□□□ -1.27
MCF2-205ENST00000437564 TMEM87BQ96K49 555 aa7.13□□□□□ -1.27
MCF2-205ENST00000437564 TUBGCP5Q96RT8 1024 aa7.13□□□□□ -1.27
MCF2-205ENST00000437564 SRPK1Q96SB4 655 aaKnown RBP7.13□□□□□ -1.27
MCF2-205ENST00000437564 HGH1Q9BTY7 390 aa7.13□□□□□ -1.27
MCF2-205ENST00000437564 CARD6Q9BX69 1037 aa7.13□□□□□ -1.27
MCF2-205ENST00000437564 SERHL2Q9H4I8 314 aa7.13□□□□□ -1.27
MCF2-205ENST00000437564 NDFIP2Q9NV92 336 aa7.13□□□□□ -1.27
MCF2-205ENST00000437564 EURLQ9NYK6 297 aa7.13□□□□□ -1.27
MCF2-205ENST00000437564 PDP2Q9P2J9 529 aa7.13□□□□□ -1.27
MCF2-205ENST00000437564 CRNNQ9UBG3 495 aaPredicted RBP7.13□□□□□ -1.27
MCF2-205ENST00000437564 SAP30BPQ9UHR5 308 aaKnown RBP7.13□□□□□ -1.27
MCF2-205ENST00000437564 FAM184BQ9ULE4 1060 aa7.13□□□□□ -1.27
MCF2-205ENST00000437564 PPP1R9AQ9ULJ8 1098 aa7.13□□□□□ -1.27
MCF2-205ENST00000437564 ERCC6Q03468 1493 aa7.13□□□□□ -1.27
MCF2-205ENST00000437564 FYCO1Q9BQS8 1478 aa7.13□□□□□ -1.27
MCF2-205ENST00000437564 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP7.12□□□□□ -1.27
MCF2-205ENST00000437564 LOC105371267A0A1B0GV96 52 aa7.12□□□□□ -1.27
MCF2-205ENST00000437564 GOLGA8CPA6NN73 597 aa7.12□□□□□ -1.27
MCF2-205ENST00000437564 BAG3O95817 575 aa7.12□□□□□ -1.27
MCF2-205ENST00000437564 GHRP10912 638 aa7.12□□□□□ -1.27
MCF2-205ENST00000437564 IDEP14735 1019 aa7.12□□□□□ -1.27
MCF2-205ENST00000437564 PTPN2P17706 415 aa7.12□□□□□ -1.27
MCF2-205ENST00000437564 PRKACBP22694 351 aa7.12□□□□□ -1.27
MCF2-205ENST00000437564 PDE6BP35913 854 aa7.12□□□□□ -1.27
MCF2-205ENST00000437564 SNX16P57768 344 aa7.12□□□□□ -1.27
MCF2-205ENST00000437564 CCZ1BP86790 482 aa7.12□□□□□ -1.27
MCF2-205ENST00000437564 CCZ1P86791 482 aaPredicted RBP7.12□□□□□ -1.27
MCF2-205ENST00000437564 EN1Q05925 392 aaPredicted RBP7.12□□□□□ -1.27
MCF2-205ENST00000437564 PAK2Q13177 524 aa7.12□□□□□ -1.27
MCF2-205ENST00000437564 WASHC4Q2M389 1173 aa7.12□□□□□ -1.27
MCF2-205ENST00000437564 IL23RQ5VWK5 629 aa7.12□□□□□ -1.27
MCF2-205ENST00000437564 ZNF449Q6P9G9 518 aa7.12□□□□□ -1.27
MCF2-205ENST00000437564 UNC5DQ6UXZ4 953 aa7.12□□□□□ -1.27
MCF2-205ENST00000437564 DSTYKQ6XUX3 929 aa7.12□□□□□ -1.27
MCF2-205ENST00000437564 LRRN4CLQ8ND94 238 aa7.12□□□□□ -1.27
MCF2-205ENST00000437564 EPS8L3Q8TE67 593 aaKnown RBP7.12□□□□□ -1.27
MCF2-205ENST00000437564 ARHGEF2Q92974 986 aaKnown RBP7.12□□□□□ -1.27
MCF2-205ENST00000437564 STAMBPL1Q96FJ0 436 aa7.12□□□□□ -1.27
MCF2-205ENST00000437564 PPP1R13BQ96KQ4 1090 aa7.12□□□□□ -1.27
MCF2-205ENST00000437564 MPHOSPH9Q99550 1183 aa7.12□□□□□ -1.27
MCF2-205ENST00000437564 GBA3Q9H227 469 aa7.12□□□□□ -1.27
MCF2-205ENST00000437564 KAT14Q9H8E8 782 aa7.12□□□□□ -1.27
MCF2-205ENST00000437564 ABCF3Q9NUQ8 709 aa7.12□□□□□ -1.27
MCF2-205ENST00000437564 MOCS1Q9NZB8 636 aa7.12□□□□□ -1.27
MCF2-205ENST00000437564 HERC5Q9UII4 1024 aaKnown RBP7.12□□□□□ -1.27
MCF2-205ENST00000437564 HDAC9Q9UKV0 1011 aa7.12□□□□□ -1.27
MCF2-205ENST00000437564 L3MBTL1Q9Y468 752 aa7.12□□□□□ -1.27
MCF2-205ENST00000437564 COMMD3-BMI1R4GMX3 469 aa7.12□□□□□ -1.27
MCF2-205ENST00000437564 REREQ9P2R6 1566 aa7.12□□□□□ -1.27
MCF2-205ENST00000437564 BTBD19C9JJ37 291 aa7.11□□□□□ -1.27
MCF2-205ENST00000437564 PSMD14O00487 310 aa7.11□□□□□ -1.27
MCF2-205ENST00000437564 KMOO15229 486 aa7.11□□□□□ -1.27
MCF2-205ENST00000437564 N4BP1O75113 896 aaKnown RBP7.11□□□□□ -1.27
MCF2-205ENST00000437564 YEATS4O95619 227 aa7.11□□□□□ -1.27
MCF2-205ENST00000437564 GSTT2P0CG29 244 aa7.11□□□□□ -1.27
MCF2-205ENST00000437564 GSTT2BP0CG30 244 aa7.11□□□□□ -1.27
MCF2-205ENST00000437564 CYP2C9P11712 490 aa7.11□□□□□ -1.27
MCF2-205ENST00000437564 POLD2P49005 469 aa7.11□□□□□ -1.27
MCF2-205ENST00000437564 KPNA1P52294 538 aaPredicted RBP7.11□□□□□ -1.27
MCF2-205ENST00000437564 THOP1P52888 689 aa7.11□□□□□ -1.27
MCF2-205ENST00000437564 SKOR1P84550 965 aa7.11□□□□□ -1.27
MCF2-205ENST00000437564 TRAP1Q12931 704 aaKnown RBP7.11□□□□□ -1.27
MCF2-205ENST00000437564 SP140Q13342 867 aa7.11□□□□□ -1.27
MCF2-205ENST00000437564 INSCQ1MX18 579 aa7.11□□□□□ -1.27
MCF2-205ENST00000437564 ARL13BQ3SXY8 428 aa7.11□□□□□ -1.27
MCF2-205ENST00000437564 ZNF362Q5T0B9 420 aaPredicted RBP7.11□□□□□ -1.27
MCF2-205ENST00000437564 RNF187Q5TA31 235 aaPredicted RBP7.11□□□□□ -1.27
MCF2-205ENST00000437564 INTS8Q75QN2 995 aaKnown RBP7.11□□□□□ -1.27
MCF2-205ENST00000437564 USP38Q8NB14 1042 aa7.11□□□□□ -1.27
MCF2-205ENST00000437564 NLRP7Q8WX94 980 aa7.11□□□□□ -1.27
MCF2-205ENST00000437564 LPIN2Q92539 896 aa7.11□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms