RNA–Protein interactions for RNA: ENST00000433888.5

PTPN4-205, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 954 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-205ENST00000433888 MMP19Q99542 508 aa6.59□□□□□ -1.35
PTPN4-205ENST00000433888 BDH2Q9BUT1 245 aa6.59□□□□□ -1.35
PTPN4-205ENST00000433888 NUDT5Q9UKK9 219 aa6.59□□□□□ -1.35
PTPN4-205ENST00000433888 EMC9Q9Y3B6 208 aa6.59□□□□□ -1.35
PTPN4-205ENST00000433888 TRBV23OR9-2A0A075B6M9 112 aa6.58□□□□□ -1.36
PTPN4-205ENST00000433888 ANKRD34BA5PLL1 514 aa6.58□□□□□ -1.36
PTPN4-205ENST00000433888 NASPP49321 788 aaPredicted RBP6.58□□□□□ -1.36
PTPN4-205ENST00000433888 CYP4F3Q08477 520 aa6.58□□□□□ -1.36
PTPN4-205ENST00000433888 PPP2R5EQ16537 467 aa6.58□□□□□ -1.36
PTPN4-205ENST00000433888 NT5DC4Q86YG4 428 aa6.58□□□□□ -1.36
PTPN4-205ENST00000433888 LINC00482Q8N8I6 264 aa6.58□□□□□ -1.36
PTPN4-205ENST00000433888 CNOT11Q9UKZ1 510 aaKnown RBP6.58□□□□□ -1.36
PTPN4-205ENST00000433888 AKT3Q9Y243 479 aa6.58□□□□□ -1.36
PTPN4-205ENST00000433888 SIT1Q9Y3P8 196 aa6.58□□□□□ -1.36
PTPN4-205ENST00000433888 NPHS1O60500 1241 aa6.57□□□□□ -1.36
PTPN4-205ENST00000433888 NTRK1P04629 796 aa6.57□□□□□ -1.36
PTPN4-205ENST00000433888 UBXN11Q5T124 520 aa6.57□□□□□ -1.36
PTPN4-205ENST00000433888 VHLLQ6RSH7 139 aa6.57□□□□□ -1.36
PTPN4-205ENST00000433888 SEC16BQ96JE7 1060 aa6.57□□□□□ -1.36
PTPN4-205ENST00000433888 GPRC5CQ9NQ84 441 aa6.57□□□□□ -1.36
PTPN4-205ENST00000433888 CLEC1BQ9P126 229 aa6.57□□□□□ -1.36
PTPN4-205ENST00000433888 SUGT1Q9Y2Z0 365 aa6.57□□□□□ -1.36
PTPN4-205ENST00000433888 KCNH1O95259 989 aa6.56□□□□□ -1.36
PTPN4-205ENST00000433888 FUCA1P04066 466 aa6.56□□□□□ -1.36
PTPN4-205ENST00000433888 PLS3P13797 630 aa6.56□□□□□ -1.36
PTPN4-205ENST00000433888 SARSP49591 514 aaKnown RBP6.56□□□□□ -1.36
PTPN4-205ENST00000433888 SCRN1Q12765 414 aa6.56□□□□□ -1.36
PTPN4-205ENST00000433888 C9orf131Q5VYM1 1079 aa6.56□□□□□ -1.36
PTPN4-205ENST00000433888 USP33Q8TEY7 942 aa6.56□□□□□ -1.36
PTPN4-205ENST00000433888 MRGPRX3Q96LB0 322 aa6.56□□□□□ -1.36
PTPN4-205ENST00000433888 LNPKQ9C0E8 428 aa6.56□□□□□ -1.36
PTPN4-205ENST00000433888 ZBTB7CA1YPR0 619 aa6.55□□□□□ -1.36
PTPN4-205ENST00000433888 ARNTLO00327 626 aa6.55□□□□□ -1.36
PTPN4-205ENST00000433888 C8BP07358 591 aa6.55□□□□□ -1.36
PTPN4-205ENST00000433888 ZNF143P52747 638 aaPredicted RBP6.55□□□□□ -1.36
PTPN4-205ENST00000433888 INF2Q27J81 1249 aa6.55□□□□□ -1.36
PTPN4-205ENST00000433888 HHIPL2Q6UWX4 724 aa6.55□□□□□ -1.36
PTPN4-205ENST00000433888 ZNF761Q86XN6 746 aaPredicted RBP6.55□□□□□ -1.36
PTPN4-205ENST00000433888 TRIM59Q8IWR1 403 aa6.55□□□□□ -1.36
PTPN4-205ENST00000433888 BVESQ8NE79 360 aa6.55□□□□□ -1.36
PTPN4-205ENST00000433888 DDX11Q96FC9 970 aa6.55□□□□□ -1.36
PTPN4-205ENST00000433888 RBM15Q96T37 977 aaKnown RBP eCLIP6.55□□□□□ -1.36
PTPN4-205ENST00000433888 APBA2Q99767 749 aa6.55□□□□□ -1.36
PTPN4-205ENST00000433888 SYT3Q9BQG1 590 aa6.55□□□□□ -1.36
PTPN4-205ENST00000433888 GORASP1Q9BQQ3 440 aa6.55□□□□□ -1.36
PTPN4-205ENST00000433888 USP40Q9NVE5 1235 aa6.55□□□□□ -1.36
PTPN4-205ENST00000433888 SGSM2O43147 1006 aa6.54□□□□□ -1.36
PTPN4-205ENST00000433888 THBDP07204 575 aa6.54□□□□□ -1.36
PTPN4-205ENST00000433888 FRS2Q8WU20 508 aa6.54□□□□□ -1.36
PTPN4-205ENST00000433888 ZBTB8AQ96BR9 441 aa6.54□□□□□ -1.36
PTPN4-205ENST00000433888 CYP26B1Q9NR63 512 aa6.54□□□□□ -1.36
PTPN4-205ENST00000433888 KIAA1522Q9P206 1035 aaPredicted RBP6.54□□□□□ -1.36
PTPN4-205ENST00000433888 CNR2P34972 360 aa6.53□□□□□ -1.36
PTPN4-205ENST00000433888 SMAD4Q13485 552 aaKnown RBP6.53□□□□□ -1.36
PTPN4-205ENST00000433888 GTF2IRD2BQ6EKJ0 949 aa6.53□□□□□ -1.36
PTPN4-205ENST00000433888 POMZP3Q6PJE2 187 aa6.53□□□□□ -1.36
PTPN4-205ENST00000433888 TTLL7Q6ZT98 887 aa6.53□□□□□ -1.36
PTPN4-205ENST00000433888 GTF2IRD2Q86UP8 949 aa6.53□□□□□ -1.36
PTPN4-205ENST00000433888 MIB1Q86YT6 1006 aa6.53□□□□□ -1.36
PTPN4-205ENST00000433888 NPLOC4Q8TAT6 608 aa6.53□□□□□ -1.36
PTPN4-205ENST00000433888 DDX1Q92499 740 aaKnown RBP6.53□□□□□ -1.36
PTPN4-205ENST00000433888 C11orf84Q9BUA3 381 aaPredicted RBP6.53□□□□□ -1.36
PTPN4-205ENST00000433888 LGR4Q9BXB1 951 aa6.53□□□□□ -1.36
PTPN4-205ENST00000433888 MARCH2Q9P0N8 246 aa6.53□□□□□ -1.36
PTPN4-205ENST00000433888 NTMQ9P121 344 aa6.53□□□□□ -1.36
PTPN4-205ENST00000433888 ITGB3P05106 788 aa6.52□□□□□ -1.37
PTPN4-205ENST00000433888 ZXDCQ2QGD7 858 aaPredicted RBP6.52□□□□□ -1.37
PTPN4-205ENST00000433888 TEX2Q8IWB9 1127 aa6.52□□□□□ -1.37
PTPN4-205ENST00000433888 ADAMTS17Q8TE56 1095 aa6.52□□□□□ -1.37
PTPN4-205ENST00000433888 CPLX3Q8WVH0 158 aa6.52□□□□□ -1.37
PTPN4-205ENST00000433888 MRRFQ96E11 262 aaKnown RBP6.52□□□□□ -1.37
PTPN4-205ENST00000433888 TGIF2Q9GZN2 237 aa6.52□□□□□ -1.37
PTPN4-205ENST00000433888 NKX2-4Q9H2Z4 354 aa6.52□□□□□ -1.37
PTPN4-205ENST00000433888 ACBD3Q9H3P7 528 aa6.52□□□□□ -1.37
PTPN4-205ENST00000433888 K7ESM1 405 aa6.51□□□□□ -1.37
PTPN4-205ENST00000433888 CYP2C8P10632 490 aa6.51□□□□□ -1.37
PTPN4-205ENST00000433888 RPL13P26373 211 aaKnown RBP6.51□□□□□ -1.37
PTPN4-205ENST00000433888 THBS2P35442 1172 aa6.51□□□□□ -1.37
PTPN4-205ENST00000433888 GJA9P57773 515 aa6.51□□□□□ -1.37
PTPN4-205ENST00000433888 RBM10P98175 930 aaKnown RBP6.51□□□□□ -1.37
PTPN4-205ENST00000433888 DCP2Q8IU60 420 aaKnown RBP6.51□□□□□ -1.37
PTPN4-205ENST00000433888 Q8N1Y9 231 aa6.51□□□□□ -1.37
PTPN4-205ENST00000433888 CRACR2BQ8N4Y2 399 aaPredicted RBP6.51□□□□□ -1.37
PTPN4-205ENST00000433888 FAM26EQ8N5C1 309 aa6.51□□□□□ -1.37
PTPN4-205ENST00000433888 BORCS6Q96GS4 357 aa6.51□□□□□ -1.37
PTPN4-205ENST00000433888 PCDH18Q9HCL0 1135 aa6.51□□□□□ -1.37
PTPN4-205ENST00000433888 TMEFF2Q9UIK5 374 aaPredicted RBP6.51□□□□□ -1.37
PTPN4-205ENST00000433888 STRIP2Q9ULQ0 834 aa6.51□□□□□ -1.37
PTPN4-205ENST00000433888 C22orf46C9J442 243 aa6.5□□□□□ -1.37
PTPN4-205ENST00000433888 NOP56O00567 594 aaKnown RBP6.5□□□□□ -1.37
PTPN4-205ENST00000433888 SLC6A11P48066 632 aa6.5□□□□□ -1.37
PTPN4-205ENST00000433888 NCAPHQ15003 741 aa6.5□□□□□ -1.37
PTPN4-205ENST00000433888 PRR31Q5SQ13 230 aa6.5□□□□□ -1.37
PTPN4-205ENST00000433888 ETV3LQ6ZN32 361 aa6.5□□□□□ -1.37
PTPN4-205ENST00000433888 RIOX2Q8IUF8 465 aa6.5□□□□□ -1.37
PTPN4-205ENST00000433888 CCDC103Q8IW40 242 aa6.5□□□□□ -1.37
PTPN4-205ENST00000433888 KYQ8NBH2 561 aa6.5□□□□□ -1.37
PTPN4-205ENST00000433888 KREMEN2Q8NCW0 462 aa6.5□□□□□ -1.37
PTPN4-205ENST00000433888 X6R8D5 127 aa6.5□□□□□ -1.37
PTPN4-205ENST00000433888 SMARCA5O60264 1052 aaPredicted RBP6.49□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms