RNA–Protein interactions for RNA: ENST00000430118.1

HMGB3-203, Transcript of high mobility group box 3, humanhuman

TSL 1 (best)

Gene HMGB3, Length 529 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-203ENST00000430118 RASSF7Q02833 373 aa5.4□□□□□ -1.54
HMGB3-203ENST00000430118 E4F1Q66K89 784 aaPredicted RBP5.4□□□□□ -1.54
HMGB3-203ENST00000430118 PKN3Q6P5Z2 889 aa5.4□□□□□ -1.54
HMGB3-203ENST00000430118 LINC00114Q6XXX2 140 aa5.4□□□□□ -1.54
HMGB3-203ENST00000430118 SVOPQ8N4V2 548 aa5.4□□□□□ -1.54
HMGB3-203ENST00000430118 UBR7Q8N806 425 aa5.4□□□□□ -1.54
HMGB3-203ENST00000430118 ADCY4Q8NFM4 1077 aa5.4□□□□□ -1.54
HMGB3-203ENST00000430118 NEDD1Q8NHV4 660 aa5.4□□□□□ -1.54
HMGB3-203ENST00000430118 XAGE3Q8WTP9 111 aa5.4□□□□□ -1.54
HMGB3-203ENST00000430118 LENG1Q96BZ8 264 aaPredicted RBP5.4□□□□□ -1.54
HMGB3-203ENST00000430118 FAM46AQ96IP4 442 aaKnown RBP5.4□□□□□ -1.54
HMGB3-203ENST00000430118 TTC1Q99614 292 aa5.4□□□□□ -1.54
HMGB3-203ENST00000430118 PLVAPQ9BX97 442 aa5.4□□□□□ -1.54
HMGB3-203ENST00000430118 PRDM14Q9GZV8 571 aa5.4□□□□□ -1.54
HMGB3-203ENST00000430118 NOL6Q9H6R4 1146 aaKnown RBP5.4□□□□□ -1.54
HMGB3-203ENST00000430118 RRAGCQ9HB90 399 aa5.4□□□□□ -1.54
HMGB3-203ENST00000430118 TNPO3Q9Y5L0 923 aaKnown RBP5.4□□□□□ -1.54
HMGB3-203ENST00000430118 NWD1Q149M9 1564 aa5.4□□□□□ -1.55
HMGB3-203ENST00000430118 COL16A1Q07092 1604 aaPredicted RBP5.4□□□□□ -1.55
HMGB3-203ENST00000430118 EHBP1L1Q8N3D4 1523 aa5.39□□□□□ -1.55
HMGB3-203ENST00000430118 LRP6O75581 1613 aa5.39□□□□□ -1.55
HMGB3-203ENST00000430118 AHDC1Q5TGY3 1603 aaPredicted RBP5.39□□□□□ -1.55
HMGB3-203ENST00000430118 PRC1O43663 620 aa5.39□□□□□ -1.55
HMGB3-203ENST00000430118 BPIP17213 487 aa5.39□□□□□ -1.55
HMGB3-203ENST00000430118 KCNA6P17658 529 aa5.39□□□□□ -1.55
HMGB3-203ENST00000430118 PREPP48147 710 aa5.39□□□□□ -1.55
HMGB3-203ENST00000430118 NEK4P51957 841 aa5.39□□□□□ -1.55
HMGB3-203ENST00000430118 EVA1CP58658 441 aa5.39□□□□□ -1.55
HMGB3-203ENST00000430118 FAPQ12884 760 aa5.39□□□□□ -1.55
HMGB3-203ENST00000430118 NTRK3Q16288 839 aa5.39□□□□□ -1.55
HMGB3-203ENST00000430118 RGL3Q3MIN7 710 aa5.39□□□□□ -1.55
HMGB3-203ENST00000430118 ZCCHC8Q6NZY4 707 aaKnown RBP5.39□□□□□ -1.55
HMGB3-203ENST00000430118 SEZ6L2Q6UXD5 910 aa5.39□□□□□ -1.55
HMGB3-203ENST00000430118 DDX53Q86TM3 631 aaKnown RBP5.39□□□□□ -1.55
HMGB3-203ENST00000430118 TMEM145Q8NBT3 493 aa5.39□□□□□ -1.55
HMGB3-203ENST00000430118 OR2W6PQ8NHA6 318 aa5.39□□□□□ -1.55
HMGB3-203ENST00000430118 PUM2Q8TB72 1066 aaKnown RBP eCLIP5.39□□□□□ -1.55
HMGB3-203ENST00000430118 PIWIL2Q8TC59 973 aaKnown RBP5.39□□□□□ -1.55
HMGB3-203ENST00000430118 LEO1Q8WVC0 666 aaPredicted RBP5.39□□□□□ -1.55
HMGB3-203ENST00000430118 COPS5Q92905 334 aa5.39□□□□□ -1.55
HMGB3-203ENST00000430118 SCLYQ96I15 445 aa5.39□□□□□ -1.55
HMGB3-203ENST00000430118 NACC1Q96RE7 527 aa5.39□□□□□ -1.55
HMGB3-203ENST00000430118 DSCC1Q9BVC3 393 aa5.39□□□□□ -1.55
HMGB3-203ENST00000430118 ASPSCR1Q9BZE9 553 aa5.39□□□□□ -1.55
HMGB3-203ENST00000430118 MTFR1LQ9H019 292 aa5.39□□□□□ -1.55
HMGB3-203ENST00000430118 ASCC2Q9H1I8 757 aaPredicted RBP5.39□□□□□ -1.55
HMGB3-203ENST00000430118 IFT22Q9H7X7 185 aa5.39□□□□□ -1.55
HMGB3-203ENST00000430118 SLC5A4Q9NY91 659 aa5.39□□□□□ -1.55
HMGB3-203ENST00000430118 DAGLAQ9Y4D2 1042 aa5.39□□□□□ -1.55
HMGB3-203ENST00000430118 NPFFR2Q9Y5X5 522 aa5.39□□□□□ -1.55
HMGB3-203ENST00000430118 KDM5AP29375 1690 aaKnown RBP5.39□□□□□ -1.55
HMGB3-203ENST00000430118 RGS12O14924 1447 aa5.39□□□□□ -1.55
HMGB3-203ENST00000430118 TSPAN6O43657 245 aa5.38□□□□□ -1.55
HMGB3-203ENST00000430118 JMJD7P0C870 316 aa5.38□□□□□ -1.55
HMGB3-203ENST00000430118 SPATA31C1P0DKV0 1188 aa5.38□□□□□ -1.55
HMGB3-203ENST00000430118 RAB6AP20340 208 aa5.38□□□□□ -1.55
HMGB3-203ENST00000430118 KCNJ6P48051 423 aa5.38□□□□□ -1.55
HMGB3-203ENST00000430118 NEK2P51955 445 aa5.38□□□□□ -1.55
HMGB3-203ENST00000430118 MCL1Q07820 350 aa5.38□□□□□ -1.55
HMGB3-203ENST00000430118 STRN3Q13033 797 aa5.38□□□□□ -1.55
HMGB3-203ENST00000430118 STAT4Q14765 748 aa5.38□□□□□ -1.55
HMGB3-203ENST00000430118 CFAP100Q494V2 611 aa5.38□□□□□ -1.55
HMGB3-203ENST00000430118 FGD2Q7Z6J4 655 aa5.38□□□□□ -1.55
HMGB3-203ENST00000430118 STRA8Q7Z7C7 330 aa5.38□□□□□ -1.55
HMGB3-203ENST00000430118 CDH24Q86UP0 819 aa5.38□□□□□ -1.55
HMGB3-203ENST00000430118 WHAMMQ8TF30 809 aa5.38□□□□□ -1.55
HMGB3-203ENST00000430118 USP7Q93009 1102 aa5.38□□□□□ -1.55
HMGB3-203ENST00000430118 POLR3GLQ9BT43 218 aa5.38□□□□□ -1.55
HMGB3-203ENST00000430118 MENTQ9BUN1 341 aa5.38□□□□□ -1.55
HMGB3-203ENST00000430118 CHST7Q9NS84 486 aa5.38□□□□□ -1.55
HMGB3-203ENST00000430118 SLC52A1Q9NWF4 448 aa5.38□□□□□ -1.55
HMGB3-203ENST00000430118 ST14Q9Y5Y6 855 aa5.38□□□□□ -1.55
HMGB3-203ENST00000430118 NCOA3Q9Y6Q9 1424 aa5.38□□□□□ -1.55
HMGB3-203ENST00000430118 NCOA2Q15596 1464 aa5.38□□□□□ -1.55
HMGB3-203ENST00000430118 EFCAB6Q5THR3 1501 aa5.38□□□□□ -1.55
HMGB3-203ENST00000430118 C9orf172C9J069 976 aa5.37□□□□□ -1.55
HMGB3-203ENST00000430118 K7ESF4 209 aa5.37□□□□□ -1.55
HMGB3-203ENST00000430118 ARVCFO00192 962 aa5.37□□□□□ -1.55
HMGB3-203ENST00000430118 ARHGEF15O94989 841 aa5.37□□□□□ -1.55
HMGB3-203ENST00000430118 APBA3O96018 575 aa5.37□□□□□ -1.55
HMGB3-203ENST00000430118 TSPY4P0CV99 314 aa5.37□□□□□ -1.55
HMGB3-203ENST00000430118 TSPY10P0CW01 314 aa5.37□□□□□ -1.55
HMGB3-203ENST00000430118 ENDOUP21128 410 aaKnown RBP5.37□□□□□ -1.55
HMGB3-203ENST00000430118 NOP2P46087 812 aaKnown RBP5.37□□□□□ -1.55
HMGB3-203ENST00000430118 SCNN1BP51168 640 aa5.37□□□□□ -1.55
HMGB3-203ENST00000430118 GPR85P60893 370 aa5.37□□□□□ -1.55
HMGB3-203ENST00000430118 RBM6P78332 1123 aaKnown RBP5.37□□□□□ -1.55
HMGB3-203ENST00000430118 KCNAB2Q13303 367 aa5.37□□□□□ -1.55
HMGB3-203ENST00000430118 FAM50AQ14320 339 aaKnown RBP5.37□□□□□ -1.55
HMGB3-203ENST00000430118 ZNF460Q14592 562 aa5.37□□□□□ -1.55
HMGB3-203ENST00000430118 PPP2R5AQ15172 486 aa5.37□□□□□ -1.55
HMGB3-203ENST00000430118 PCBP1Q15365 356 aaKnown RBP eCLIP5.37□□□□□ -1.55
HMGB3-203ENST00000430118 SFRP5Q5T4F7 317 aa5.37□□□□□ -1.55
HMGB3-203ENST00000430118 CDCA2Q69YH5 1023 aaPredicted RBP5.37□□□□□ -1.55
HMGB3-203ENST00000430118 CWF19L1Q69YN2 538 aaKnown RBP5.37□□□□□ -1.55
HMGB3-203ENST00000430118 IQCEQ6IPM2 695 aa5.37□□□□□ -1.55
HMGB3-203ENST00000430118 CDPF1Q6NVV7 123 aa5.37□□□□□ -1.55
HMGB3-203ENST00000430118 IFNL3Q8IZI9 196 aa5.37□□□□□ -1.55
HMGB3-203ENST00000430118 DTWD2Q8NBA8 298 aa5.37□□□□□ -1.55
HMGB3-203ENST00000430118 KREMEN2Q8NCW0 462 aa5.37□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms