RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 STAM2O75886 525 aa11.49□□□□□ -0.57
CD44-207ENST00000425428 BAG4O95429 457 aaKnown RBP11.49□□□□□ -0.57
CD44-207ENST00000425428 ATP2B1P20020 1258 aa11.49□□□□□ -0.57
CD44-207ENST00000425428 ADORA2AP29274 412 aa11.49□□□□□ -0.57
CD44-207ENST00000425428 CLK2P49760 499 aaKnown RBP11.49□□□□□ -0.57
CD44-207ENST00000425428 LACTBP83111 547 aaPredicted RBP11.49□□□□□ -0.57
CD44-207ENST00000425428 GHRHRQ02643 423 aa11.49□□□□□ -0.57
CD44-207ENST00000425428 PDE4DQ08499 809 aa11.49□□□□□ -0.57
CD44-207ENST00000425428 ORC2Q13416 577 aaPredicted RBP11.49□□□□□ -0.57
CD44-207ENST00000425428 SF3A1Q15459 793 aaKnown RBP11.49□□□□□ -0.57
CD44-207ENST00000425428 GNPTABQ3T906 1256 aa11.49□□□□□ -0.57
CD44-207ENST00000425428 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.49□□□□□ -0.57
CD44-207ENST00000425428 NLRX1Q86UT6 975 aa11.49□□□□□ -0.57
CD44-207ENST00000425428 RASGRP4Q8TDF6 673 aa11.49□□□□□ -0.57
CD44-207ENST00000425428 TBCKQ8TEA7 893 aa11.49□□□□□ -0.57
CD44-207ENST00000425428 MYH7BA7E2Y1 1941 aa11.49□□□□□ -0.57
CD44-207ENST00000425428 MYH15Q9Y2K3 1946 aa11.49□□□□□ -0.57
CD44-207ENST00000425428 GPR25O00155 361 aa11.49□□□□□ -0.57
CD44-207ENST00000425428 CCNT1O60563 726 aaKnown RBP11.49□□□□□ -0.57
CD44-207ENST00000425428 MYCLP12524 364 aaPredicted RBP11.49□□□□□ -0.57
CD44-207ENST00000425428 STXBP2Q15833 593 aa11.49□□□□□ -0.57
CD44-207ENST00000425428 INF2Q27J81 1249 aa11.49□□□□□ -0.57
CD44-207ENST00000425428 LETM2Q2VYF4 491 aa11.49□□□□□ -0.57
CD44-207ENST00000425428 NOM1Q5C9Z4 860 aaKnown RBP11.49□□□□□ -0.57
CD44-207ENST00000425428 MYSM1Q5VVJ2 828 aa11.49□□□□□ -0.57
CD44-207ENST00000425428 SLC30A10Q6XR72 485 aa11.49□□□□□ -0.57
CD44-207ENST00000425428 TRMT44Q8IYL2 757 aaKnown RBP11.49□□□□□ -0.57
CD44-207ENST00000425428 JMYQ8N9B5 988 aa11.49□□□□□ -0.57
CD44-207ENST00000425428 OXER1Q8TDS5 423 aa11.49□□□□□ -0.57
CD44-207ENST00000425428 TMEM260Q9NX78 707 aa11.49□□□□□ -0.57
CD44-207ENST00000425428 DIS3Q9Y2L1 958 aaKnown RBP11.49□□□□□ -0.57
CD44-207ENST00000425428 PEX10O60683 326 aa11.48□□□□□ -0.57
CD44-207ENST00000425428 ECM2O94769 699 aaPredicted RBP11.48□□□□□ -0.57
CD44-207ENST00000425428 TAL1P17542 331 aaPredicted RBP11.48□□□□□ -0.57
CD44-207ENST00000425428 EIF2AK2P19525 551 aaKnown RBP11.48□□□□□ -0.57
CD44-207ENST00000425428 SREBF1P36956 1147 aa11.48□□□□□ -0.57
CD44-207ENST00000425428 ARHGAP4P98171 946 aa11.48□□□□□ -0.57
CD44-207ENST00000425428 RESTQ13127 1097 aa11.48□□□□□ -0.57
CD44-207ENST00000425428 MAP2K5Q13163 448 aa11.48□□□□□ -0.57
CD44-207ENST00000425428 GRB14Q14449 540 aa11.48□□□□□ -0.57
CD44-207ENST00000425428 TTC38Q5R3I4 469 aa11.48□□□□□ -0.57
CD44-207ENST00000425428 CDHR1Q96JP9 859 aa11.48□□□□□ -0.57
CD44-207ENST00000425428 SCAND2PQ9GZW5 306 aaPredicted RBP11.48□□□□□ -0.57
CD44-207ENST00000425428 PXMP2Q9NR77 195 aa11.48□□□□□ -0.57
CD44-207ENST00000425428 GOLGA6L4A6NEF3 574 aa11.47□□□□□ -0.57
CD44-207ENST00000425428 DDIT3P35638 169 aa11.47□□□□□ -0.57
CD44-207ENST00000425428 PRMT2P55345 433 aa11.47□□□□□ -0.57
CD44-207ENST00000425428 SETQ01105 290 aaPredicted RBP11.47□□□□□ -0.57
CD44-207ENST00000425428 STK38Q15208 465 aa11.47□□□□□ -0.57
CD44-207ENST00000425428 FOXD4L6Q3SYB3 417 aaPredicted RBP11.47□□□□□ -0.57
CD44-207ENST00000425428 MOXD1Q6UVY6 613 aa11.47□□□□□ -0.57
CD44-207ENST00000425428 FOXD4L3Q6VB84 417 aaPredicted RBP11.47□□□□□ -0.57
CD44-207ENST00000425428 ZNF467Q7Z7K2 595 aaPredicted RBP11.47□□□□□ -0.57
CD44-207ENST00000425428 MSL3Q8N5Y2 521 aaKnown RBP11.47□□□□□ -0.57
CD44-207ENST00000425428 TBC1D5Q92609 795 aa11.47□□□□□ -0.57
CD44-207ENST00000425428 TAAR1Q96RJ0 339 aa11.47□□□□□ -0.57
CD44-207ENST00000425428 RAB34Q9BZG1 259 aa11.47□□□□□ -0.57
CD44-207ENST00000425428 DOCK3Q8IZD9 2030 aa11.47□□□□□ -0.57
CD44-207ENST00000425428 TCHHQ07283 1943 aa11.47□□□□□ -0.57
CD44-207ENST00000425428 M0R2N6 131 aa11.46□□□□□ -0.57
CD44-207ENST00000425428 LAD1O00515 517 aa11.46□□□□□ -0.57
CD44-207ENST00000425428 OPLAHO14841 1288 aa11.46□□□□□ -0.57
CD44-207ENST00000425428 PGK2P07205 417 aa11.46□□□□□ -0.57
CD44-207ENST00000425428 NR3C2P08235 984 aa11.46□□□□□ -0.57
CD44-207ENST00000425428 ALDH5A1P51649 535 aaPredicted RBP11.46□□□□□ -0.57
CD44-207ENST00000425428 PKP1Q13835 747 aa11.46□□□□□ -0.57
CD44-207ENST00000425428 PGM5Q15124 567 aa11.46□□□□□ -0.57
CD44-207ENST00000425428 TMEM266Q2M3C6 531 aa11.46□□□□□ -0.57
CD44-207ENST00000425428 PCNX4Q63HM2 1172 aa11.46□□□□□ -0.57
CD44-207ENST00000425428 POTEEQ6S8J3 1075 aa11.46□□□□□ -0.57
CD44-207ENST00000425428 PGBD1Q96JS3 809 aa11.46□□□□□ -0.57
CD44-207ENST00000425428 APBA2Q99767 749 aa11.46□□□□□ -0.57
CD44-207ENST00000425428 DDX25Q9UHL0 483 aaKnown RBP11.46□□□□□ -0.57
CD44-207ENST00000425428 CNPY2Q9Y2B0 182 aa11.46□□□□□ -0.57
CD44-207ENST00000425428 KIF28PB7ZC32 967 aa11.46□□□□□ -0.58
CD44-207ENST00000425428 MAFGO15525 162 aa11.46□□□□□ -0.58
CD44-207ENST00000425428 NEMFO60524 1076 aa11.46□□□□□ -0.58
CD44-207ENST00000425428 EIF3JO75822 258 aaKnown RBP11.46□□□□□ -0.58
CD44-207ENST00000425428 CYP3A4P08684 503 aa11.46□□□□□ -0.58
CD44-207ENST00000425428 MCM7P33993 719 aa11.46□□□□□ -0.58
CD44-207ENST00000425428 NPY5RQ15761 445 aa11.46□□□□□ -0.58
CD44-207ENST00000425428 PPP4R3AQ6IN85 833 aa11.46□□□□□ -0.58
CD44-207ENST00000425428 KCNV1Q6PIU1 500 aa11.46□□□□□ -0.58
CD44-207ENST00000425428 SLFN12Q8IYM2 578 aa11.46□□□□□ -0.58
CD44-207ENST00000425428 FAM133AQ8N9E0 248 aa11.46□□□□□ -0.58
CD44-207ENST00000425428 RAET1EQ8TD07 263 aa11.46□□□□□ -0.58
CD44-207ENST00000425428 SPATA32Q96LK8 384 aa11.46□□□□□ -0.58
CD44-207ENST00000425428 PDCD2LQ9BRP1 358 aa11.46□□□□□ -0.58
CD44-207ENST00000425428 WBP1LQ9NX94 342 aa11.46□□□□□ -0.58
CD44-207ENST00000425428 ZNF236Q9UL36 1845 aa11.46□□□□□ -0.58
CD44-207ENST00000425428 UBXN2AP68543 259 aa11.45□□□□□ -0.58
CD44-207ENST00000425428 CNTN2Q02246 1040 aa11.45□□□□□ -0.58
CD44-207ENST00000425428 CEBPZQ03701 1054 aaKnown RBP11.45□□□□□ -0.58
CD44-207ENST00000425428 CEP55Q53EZ4 464 aa11.45□□□□□ -0.58
CD44-207ENST00000425428 MFSD14CQ5VZR4 134 aa11.45□□□□□ -0.58
CD44-207ENST00000425428 ANO1Q5XXA6 986 aa11.45□□□□□ -0.58
CD44-207ENST00000425428 GIMAP8Q8ND71 665 aaPredicted RBP11.45□□□□□ -0.58
CD44-207ENST00000425428 CD99L2Q8TCZ2 262 aa11.45□□□□□ -0.58
CD44-207ENST00000425428 KCNG4Q8TDN1 519 aa11.45□□□□□ -0.58
CD44-207ENST00000425428 TNFRSF25Q93038 417 aa11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms