RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 OSBPP22059 807 aa9.39□□□□□ -0.91
USP54-203ENST00000418501 SREBF1P36956 1147 aa9.39□□□□□ -0.91
USP54-203ENST00000418501 IRX3P78415 501 aaPredicted RBP9.39□□□□□ -0.91
USP54-203ENST00000418501 PDE4DQ08499 809 aa9.39□□□□□ -0.91
USP54-203ENST00000418501 Q4G0T1 1027 aa9.39□□□□□ -0.91
USP54-203ENST00000418501 PRR16Q569H4 304 aa9.39□□□□□ -0.91
USP54-203ENST00000418501 SPC24Q8NBT2 197 aa9.39□□□□□ -0.91
USP54-203ENST00000418501 NKX2-3Q8TAU0 364 aa9.39□□□□□ -0.91
USP54-203ENST00000418501 PDGFDQ9GZP0 370 aaPredicted RBP9.39□□□□□ -0.91
USP54-203ENST00000418501 GGA3Q9NZ52 723 aa9.39□□□□□ -0.91
USP54-203ENST00000418501 RWDD2AQ9UIY3 292 aa9.39□□□□□ -0.91
USP54-203ENST00000418501 ACTN4O43707 911 aaKnown RBP9.39□□□□□ -0.91
USP54-203ENST00000418501 GAS7O60861 476 aa9.39□□□□□ -0.91
USP54-203ENST00000418501 IDEP14735 1019 aa9.39□□□□□ -0.91
USP54-203ENST00000418501 FANCCQ00597 558 aa9.39□□□□□ -0.91
USP54-203ENST00000418501 MORC3Q14149 939 aa9.39□□□□□ -0.91
USP54-203ENST00000418501 UBE2SQ16763 222 aa9.39□□□□□ -0.91
USP54-203ENST00000418501 LDHDQ86WU2 507 aa9.39□□□□□ -0.91
USP54-203ENST00000418501 CREBRFQ8IUR6 639 aa9.39□□□□□ -0.91
USP54-203ENST00000418501 DNAJC18Q9H819 358 aa9.39□□□□□ -0.91
USP54-203ENST00000418501 DLEC1Q9Y238 1755 aa9.39□□□□□ -0.91
USP54-203ENST00000418501 GNA14O95837 355 aa9.38□□□□□ -0.91
USP54-203ENST00000418501 CYP3A4P08684 503 aa9.38□□□□□ -0.91
USP54-203ENST00000418501 ALAS1P13196 640 aa9.38□□□□□ -0.91
USP54-203ENST00000418501 ABCD1P33897 745 aa9.38□□□□□ -0.91
USP54-203ENST00000418501 EPS15P42566 896 aa9.38□□□□□ -0.91
USP54-203ENST00000418501 EVX2Q03828 476 aa9.38□□□□□ -0.91
USP54-203ENST00000418501 SAMD7Q7Z3H4 446 aa9.38□□□□□ -0.91
USP54-203ENST00000418501 SLC51AQ86UW1 340 aa9.38□□□□□ -0.91
USP54-203ENST00000418501 ZNF397Q8NF99 534 aaPredicted RBP9.38□□□□□ -0.91
USP54-203ENST00000418501 CPVLQ9H3G5 476 aa9.38□□□□□ -0.91
USP54-203ENST00000418501 CYP3A7-CYP3A51PA0A087WV96 503 aa9.38□□□□□ -0.91
USP54-203ENST00000418501 STAM2O75886 525 aa9.38□□□□□ -0.91
USP54-203ENST00000418501 CYP3A7P24462 503 aa9.38□□□□□ -0.91
USP54-203ENST00000418501 BACE1P56817 501 aa9.38□□□□□ -0.91
USP54-203ENST00000418501 COG2Q14746 738 aa9.38□□□□□ -0.91
USP54-203ENST00000418501 KARSQ15046 597 aaKnown RBP9.38□□□□□ -0.91
USP54-203ENST00000418501 NIPA1Q7RTP0 329 aa9.38□□□□□ -0.91
USP54-203ENST00000418501 MAFGO15525 162 aa9.38□□□□□ -0.91
USP54-203ENST00000418501 GAP43P17677 238 aa9.38□□□□□ -0.91
USP54-203ENST00000418501 DPCR1Q3MIW9 517 aa9.38□□□□□ -0.91
USP54-203ENST00000418501 FASTKD5Q7L8L6 764 aaKnown RBP9.38□□□□□ -0.91
USP54-203ENST00000418501 PCMTD1Q96MG8 357 aaPredicted RBP9.38□□□□□ -0.91
USP54-203ENST00000418501 C7orf25Q9BPX7 421 aa9.38□□□□□ -0.91
USP54-203ENST00000418501 TBC1D22BQ9NU19 505 aa9.38□□□□□ -0.91
USP54-203ENST00000418501 PNMA3Q9UL41 463 aa9.38□□□□□ -0.91
USP54-203ENST00000418501 CLEC11AQ9Y240 323 aa9.38□□□□□ -0.91
USP54-203ENST00000418501 NFE2L3Q9Y4A8 694 aa9.38□□□□□ -0.91
USP54-203ENST00000418501 FAM205CA6NFA0 338 aa9.38□□□□□ -0.91
USP54-203ENST00000418501 UNCXA6NJT0 531 aa9.38□□□□□ -0.91
USP54-203ENST00000418501 UBE2Q2LH0YL09 131 aa9.38□□□□□ -0.91
USP54-203ENST00000418501 RPL13P26373 211 aaKnown RBP9.38□□□□□ -0.91
USP54-203ENST00000418501 CCND2P30279 289 aa9.38□□□□□ -0.91
USP54-203ENST00000418501 NOL9Q5SY16 702 aaKnown RBP9.38□□□□□ -0.91
USP54-203ENST00000418501 NCAPH2Q6IBW4 605 aa9.38□□□□□ -0.91
USP54-203ENST00000418501 C11orf57Q6ZUT1 292 aaPredicted RBP9.38□□□□□ -0.91
USP54-203ENST00000418501 CLEC10AQ8IUN9 316 aa9.38□□□□□ -0.91
USP54-203ENST00000418501 TMEM260Q9NX78 707 aa9.38□□□□□ -0.91
USP54-203ENST00000418501 ZHX2Q9Y6X8 837 aa9.38□□□□□ -0.91
USP54-203ENST00000418501 ZSCAN12O43309 604 aa9.37□□□□□ -0.91
USP54-203ENST00000418501 PLCG1P19174 1290 aa9.37□□□□□ -0.91
USP54-203ENST00000418501 DPYDQ12882 1025 aa9.37□□□□□ -0.91
USP54-203ENST00000418501 SPP2Q13103 211 aa9.37□□□□□ -0.91
USP54-203ENST00000418501 GLIPR1L2Q4G1C9 344 aa9.37□□□□□ -0.91
USP54-203ENST00000418501 ARHGEF16Q5VV41 709 aa9.37□□□□□ -0.91
USP54-203ENST00000418501 UNC13DQ70J99 1090 aa9.37□□□□□ -0.91
USP54-203ENST00000418501 NUP88Q99567 741 aaPredicted RBP9.37□□□□□ -0.91
USP54-203ENST00000418501 RPAP3Q9H6T3 665 aaPredicted RBP9.37□□□□□ -0.91
USP54-203ENST00000418501 TUFT1Q9NNX1 390 aa9.37□□□□□ -0.91
USP54-203ENST00000418501 ADD3Q9UEY8 706 aaKnown RBP9.37□□□□□ -0.91
USP54-203ENST00000418501 PPP1R9AQ9ULJ8 1098 aa9.37□□□□□ -0.91
USP54-203ENST00000418501 CNTNAP1P78357 1384 aa9.37□□□□□ -0.91
USP54-203ENST00000418501 M0R2N6 131 aa9.37□□□□□ -0.91
USP54-203ENST00000418501 CIITAP33076 1130 aa9.37□□□□□ -0.91
USP54-203ENST00000418501 IQCB1Q15051 598 aa9.37□□□□□ -0.91
USP54-203ENST00000418501 NPY5RQ15761 445 aa9.37□□□□□ -0.91
USP54-203ENST00000418501 LRCH2Q5VUJ6 765 aa9.37□□□□□ -0.91
USP54-203ENST00000418501 TMC6Q7Z403 805 aa9.37□□□□□ -0.91
USP54-203ENST00000418501 CPXCR1Q8N123 301 aa9.37□□□□□ -0.91
USP54-203ENST00000418501 FHDC1Q9C0D6 1143 aaPredicted RBP9.37□□□□□ -0.91
USP54-203ENST00000418501 IFNKQ9P0W0 207 aa9.37□□□□□ -0.91
USP54-203ENST00000418501 EEF1GP26641 437 aaKnown RBP9.37□□□□□ -0.91
USP54-203ENST00000418501 ISM2Q6H9L7 571 aa9.37□□□□□ -0.91
USP54-203ENST00000418501 FILIP1Q7Z7B0 1213 aa9.37□□□□□ -0.91
USP54-203ENST00000418501 POTEDQ86YR6 584 aa9.37□□□□□ -0.91
USP54-203ENST00000418501 FMNL3Q8IVF7 1028 aa9.37□□□□□ -0.91
USP54-203ENST00000418501 ANKRD13AQ8IZ07 590 aa9.37□□□□□ -0.91
USP54-203ENST00000418501 ACER1Q8TDN7 264 aa9.37□□□□□ -0.91
USP54-203ENST00000418501 NELFBQ8WX92 580 aa9.37□□□□□ -0.91
USP54-203ENST00000418501 RAD54LQ92698 747 aa9.37□□□□□ -0.91
USP54-203ENST00000418501 NACC1Q96RE7 527 aa9.37□□□□□ -0.91
USP54-203ENST00000418501 ZHX3Q9H4I2 956 aa9.37□□□□□ -0.91
USP54-203ENST00000418501 LUC7LQ9NQ29 371 aaKnown RBP9.37□□□□□ -0.91
USP54-203ENST00000418501 KCND2Q9NZV8 630 aa9.37□□□□□ -0.91
USP54-203ENST00000418501 N4BP3O15049 544 aa9.36□□□□□ -0.91
USP54-203ENST00000418501 FAM13AO94988 1023 aa9.36□□□□□ -0.91
USP54-203ENST00000418501 CLCN1P35523 988 aa9.36□□□□□ -0.91
USP54-203ENST00000418501 JAK3P52333 1124 aa9.36□□□□□ -0.91
USP54-203ENST00000418501 USP17L6PQ6QN14 398 aa9.36□□□□□ -0.91
USP54-203ENST00000418501 CHST13Q8NET6 341 aa9.36□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms