RNA–Protein interactions for RNA: ENST00000417656.6

SKA1-203, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2 BASIC

Gene SKA1, Length 1,095 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-203ENST00000417656 MAF1Q9H063 256 aa14.38□□□□□ -0.11
SKA1-203ENST00000417656 KATNBL1Q9H079 304 aa14.38□□□□□ -0.11
SKA1-203ENST00000417656 DDX20Q9UHI6 824 aaKnown RBP14.38□□□□□ -0.11
SKA1-203ENST00000417656 NRBP1Q9UHY1 535 aa14.38□□□□□ -0.11
SKA1-203ENST00000417656 hCG_1984214I3L0E3 225 aa14.37□□□□□ -0.11
SKA1-203ENST00000417656 SEPT4O43236 478 aa14.37□□□□□ -0.11
SKA1-203ENST00000417656 DTNBO60941 627 aa14.37□□□□□ -0.11
SKA1-203ENST00000417656 EIF2AK2P19525 551 aaKnown RBP14.37□□□□□ -0.11
SKA1-203ENST00000417656 EDNRBP24530 442 aa14.37□□□□□ -0.11
SKA1-203ENST00000417656 AKAP17AQ02040 695 aaKnown RBP14.37□□□□□ -0.11
SKA1-203ENST00000417656 ST3GAL1Q11201 340 aa14.37□□□□□ -0.11
SKA1-203ENST00000417656 PKN1Q16512 942 aa14.37□□□□□ -0.11
SKA1-203ENST00000417656 UBE2SQ16763 222 aa14.37□□□□□ -0.11
SKA1-203ENST00000417656 CPLX2Q6PUV4 134 aaKnown RBP14.37□□□□□ -0.11
SKA1-203ENST00000417656 EEPD1Q7L9B9 569 aa14.37□□□□□ -0.11
SKA1-203ENST00000417656 FCHSD1Q86WN1 690 aa14.37□□□□□ -0.11
SKA1-203ENST00000417656 ZNF713Q8N859 430 aaPredicted RBP14.37□□□□□ -0.11
SKA1-203ENST00000417656 MORC4Q8TE76 937 aa14.37□□□□□ -0.11
SKA1-203ENST00000417656 GTF3C6Q969F1 213 aa14.37□□□□□ -0.11
SKA1-203ENST00000417656 RMDN3Q96TC7 470 aa14.37□□□□□ -0.11
SKA1-203ENST00000417656 ABHD16BQ9H3Z7 469 aa14.37□□□□□ -0.11
SKA1-203ENST00000417656 BARHL2Q9NY43 387 aa14.37□□□□□ -0.11
SKA1-203ENST00000417656 RBM27Q9P2N5 1060 aaKnown RBP14.37□□□□□ -0.11
SKA1-203ENST00000417656 LOC102724159A0A0B4J2E5 919 aa14.36□□□□□ -0.11
SKA1-203ENST00000417656 SGPL1O95470 568 aa14.36□□□□□ -0.11
SKA1-203ENST00000417656 AKR1A1P14550 325 aa14.36□□□□□ -0.11
SKA1-203ENST00000417656 PDE4DQ08499 809 aa14.36□□□□□ -0.11
SKA1-203ENST00000417656 ACVR2BQ13705 512 aa14.36□□□□□ -0.11
SKA1-203ENST00000417656 PWP2Q15269 919 aaKnown RBP14.36□□□□□ -0.11
SKA1-203ENST00000417656 ARHGEF16Q5VV41 709 aa14.36□□□□□ -0.11
SKA1-203ENST00000417656 USP17L6PQ6QN14 398 aa14.36□□□□□ -0.11
SKA1-203ENST00000417656 TRIM22Q8IYM9 498 aa14.36□□□□□ -0.11
SKA1-203ENST00000417656 SAMD3Q8N6K7 520 aa14.36□□□□□ -0.11
SKA1-203ENST00000417656 SMARCC2Q8TAQ2 1214 aa14.36□□□□□ -0.11
SKA1-203ENST00000417656 NSUN6Q8TEA1 469 aaKnown RBP14.36□□□□□ -0.11
SKA1-203ENST00000417656 CUL5Q93034 780 aa14.36□□□□□ -0.11
SKA1-203ENST00000417656 MPHOSPH6Q99547 160 aaKnown RBP14.36□□□□□ -0.11
SKA1-203ENST00000417656 CRISPLD2Q9H0B8 497 aa14.36□□□□□ -0.11
SKA1-203ENST00000417656 PSTPIP2Q9H939 334 aa14.36□□□□□ -0.11
SKA1-203ENST00000417656 PXMP2Q9NR77 195 aa14.36□□□□□ -0.11
SKA1-203ENST00000417656 MAP3K20Q9NYL2 800 aaKnown RBP14.36□□□□□ -0.11
SKA1-203ENST00000417656 KIAA1217Q5T5P2 1943 aa14.35□□□□□ -0.11
SKA1-203ENST00000417656 PIK3CDO00329 1044 aa14.35□□□□□ -0.11
SKA1-203ENST00000417656 MEIS2O14770 477 aa14.35□□□□□ -0.11
SKA1-203ENST00000417656 ADCY6O43306 1168 aa14.35□□□□□ -0.11
SKA1-203ENST00000417656 MSCO60682 206 aa14.35□□□□□ -0.11
SKA1-203ENST00000417656 CDKL5O76039 1030 aa14.35□□□□□ -0.11
SKA1-203ENST00000417656 CTDNEP1O95476 244 aa14.35□□□□□ -0.11
SKA1-203ENST00000417656 ADCY7P51828 1080 aa14.35□□□□□ -0.11
SKA1-203ENST00000417656 SSRP1Q08945 709 aaKnown RBP14.35□□□□□ -0.11
SKA1-203ENST00000417656 CCDC144BQ3MJ40 725 aa14.35□□□□□ -0.11
SKA1-203ENST00000417656 IFFO2Q5TF58 517 aa14.35□□□□□ -0.11
SKA1-203ENST00000417656 LHX8Q68G74 356 aa14.35□□□□□ -0.11
SKA1-203ENST00000417656 IL31RAQ8NI17 732 aa14.35□□□□□ -0.11
SKA1-203ENST00000417656 VTA1Q9NP79 307 aa14.35□□□□□ -0.11
SKA1-203ENST00000417656 PDGFCQ9NRA1 345 aa14.35□□□□□ -0.11
SKA1-203ENST00000417656 LIMCH1Q9UPQ0 1083 aa14.35□□□□□ -0.11
SKA1-203ENST00000417656 FRMPD4Q14CM0 1322 aa14.35□□□□□ -0.11
SKA1-203ENST00000417656 STK36Q9NRP7 1315 aa14.35□□□□□ -0.11
SKA1-203ENST00000417656 C11orf97A0A1B0GVM6 126 aaPredicted RBP14.34□□□□□ -0.11
SKA1-203ENST00000417656 ST18O60284 1047 aa14.34□□□□□ -0.11
SKA1-203ENST00000417656 DEXIO95424 95 aa14.34□□□□□ -0.11
SKA1-203ENST00000417656 TFRCP02786 760 aaKnown RBP14.34□□□□□ -0.11
SKA1-203ENST00000417656 ADCYAP1R1P41586 468 aa14.34□□□□□ -0.11
SKA1-203ENST00000417656 PGM5Q15124 567 aa14.34□□□□□ -0.11
SKA1-203ENST00000417656 AIFM3Q96NN9 605 aa14.34□□□□□ -0.11
SKA1-203ENST00000417656 PDCD2LQ9BRP1 358 aa14.34□□□□□ -0.11
SKA1-203ENST00000417656 RIC8AQ9NPQ8 531 aa14.34□□□□□ -0.11
SKA1-203ENST00000417656 VPS54Q9P1Q0 977 aa14.34□□□□□ -0.11
SKA1-203ENST00000417656 OGDHLQ9ULD0 1010 aa14.34□□□□□ -0.11
SKA1-203ENST00000417656 FAM184BQ9ULE4 1060 aa14.34□□□□□ -0.11
SKA1-203ENST00000417656 SMCO2A6NFE2 343 aa14.33□□□□□ -0.12
SKA1-203ENST00000417656 B4DLN1 442 aa14.33□□□□□ -0.12
SKA1-203ENST00000417656 FARP2O94887 1054 aaPredicted RBP14.33□□□□□ -0.12
SKA1-203ENST00000417656 CD2BP2O95400 341 aaKnown RBP14.33□□□□□ -0.12
SKA1-203ENST00000417656 NR3C2P08235 984 aa14.33□□□□□ -0.12
SKA1-203ENST00000417656 RARBP10826 455 aa14.33□□□□□ -0.12
SKA1-203ENST00000417656 PTGS1P23219 599 aa14.33□□□□□ -0.12
SKA1-203ENST00000417656 MRPL12P52815 198 aaKnown RBP14.33□□□□□ -0.12
SKA1-203ENST00000417656 TAPT1Q6NXT6 567 aa14.33□□□□□ -0.12
SKA1-203ENST00000417656 CCDC83Q8IWF9 413 aa14.33□□□□□ -0.12
SKA1-203ENST00000417656 NSUN7Q8NE18 718 aaKnown RBP14.33□□□□□ -0.12
SKA1-203ENST00000417656 DIS3LQ8TF46 1054 aaKnown RBP14.33□□□□□ -0.12
SKA1-203ENST00000417656 CCDC12Q8WUD4 166 aaPredicted RBP14.33□□□□□ -0.12
SKA1-203ENST00000417656 PGBD1Q96JS3 809 aa14.33□□□□□ -0.12
SKA1-203ENST00000417656 IWS1Q96ST2 819 aa14.33□□□□□ -0.12
SKA1-203ENST00000417656 SYNRGQ9UMZ2 1314 aa14.33□□□□□ -0.12
SKA1-203ENST00000417656 ESYT2A0FGR8 921 aa14.32□□□□□ -0.12
SKA1-203ENST00000417656 ADAMTS3O15072 1205 aa14.32□□□□□ -0.12
SKA1-203ENST00000417656 JAK2O60674 1132 aa14.32□□□□□ -0.12
SKA1-203ENST00000417656 MYCLP12524 364 aaPredicted RBP14.32□□□□□ -0.12
SKA1-203ENST00000417656 TMEM63BQ5T3F8 832 aa14.32□□□□□ -0.12
SKA1-203ENST00000417656 GJC2Q5T442 439 aaPredicted RBP14.32□□□□□ -0.12
SKA1-203ENST00000417656 CCDC148Q8NFR7 591 aa14.32□□□□□ -0.12
SKA1-203ENST00000417656 ZFP91Q96JP5 570 aaPredicted RBP14.32□□□□□ -0.12
SKA1-203ENST00000417656 XPNPEP3Q9NQH7 507 aa14.32□□□□□ -0.12
SKA1-203ENST00000417656 TMEM260Q9NX78 707 aa14.32□□□□□ -0.12
SKA1-203ENST00000417656 SPDYE3A6NKU9 549 aa14.31□□□□□ -0.12
SKA1-203ENST00000417656 PGK1P00558 417 aa14.31□□□□□ -0.12
SKA1-203ENST00000417656 SMPD1P17405 629 aa14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms