RNA–Protein interactions for RNA: ENST00000417521.5

DDR1-231, Transcript of discoidin domain receptor tyrosine kinase 1, human

TSL 5

Gene DDR1, Length 1,479 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDR1-231	ENST00000417521	MYL10	Q9BUA6	226 aa		18.97	■□□□□ 0.63
DDR1-231	ENST00000417521	USP26	Q9BXU7	913 aa		18.97	■□□□□ 0.63
DDR1-231	ENST00000417521	PDLIM7	Q9NR12	457 aa		18.97	■□□□□ 0.63
DDR1-231	ENST00000417521	SLC12A7	Q9Y666	1083 aa		18.97	■□□□□ 0.63
DDR1-231	ENST00000417521	FRMPD3	Q5JV73	1810 aa		18.97	■□□□□ 0.63
DDR1-231	ENST00000417521	SMCHD1	A6NHR9	2005 aa		18.97	■□□□□ 0.63
DDR1-231	ENST00000417521	NKRF	O15226	690 aa	Known RBP eCLIP	18.97	■□□□□ 0.63
DDR1-231	ENST00000417521	CDK7	P50613	346 aa		18.97	■□□□□ 0.63
DDR1-231	ENST00000417521	MDM2	Q00987	491 aa	Predicted RBP	18.97	■□□□□ 0.63
DDR1-231	ENST00000417521	EXOSC10	Q01780	885 aa	Known RBP	18.97	■□□□□ 0.63
DDR1-231	ENST00000417521	DHX32	Q7L7V1	743 aa	Known RBP	18.97	■□□□□ 0.63
DDR1-231	ENST00000417521	VTI1A	Q96AJ9	217 aa		18.97	■□□□□ 0.63
DDR1-231	ENST00000417521	UBE2O	Q9C0C9	1292 aa	Known RBP	18.97	■□□□□ 0.63
DDR1-231	ENST00000417521	DNAH12	Q6ZR08	3092 aa		18.96	■□□□□ 0.63
DDR1-231	ENST00000417521		A0A0U1RQG5	324 aa	Predicted RBP	18.96	■□□□□ 0.63
DDR1-231	ENST00000417521	DCDC2C	A8MYV0	355 aa		18.96	■□□□□ 0.63
DDR1-231	ENST00000417521	CLTB	P09497	229 aa		18.96	■□□□□ 0.63
DDR1-231	ENST00000417521	STXBP2	Q15833	593 aa		18.96	■□□□□ 0.63
DDR1-231	ENST00000417521	ARHGEF16	Q5VV41	709 aa		18.96	■□□□□ 0.63
DDR1-231	ENST00000417521	KCNB2	Q92953	911 aa		18.96	■□□□□ 0.63
DDR1-231	ENST00000417521	RRP36	Q96EU6	259 aa	Known RBP	18.96	■□□□□ 0.63
DDR1-231	ENST00000417521	LRRC2	Q9BYS8	371 aa		18.96	■□□□□ 0.63
DDR1-231	ENST00000417521	PRDM5	Q9NQX1	630 aa	Predicted RBP	18.96	■□□□□ 0.63
DDR1-231	ENST00000417521	ALPK3	Q96L96	1907 aa		18.95	■□□□□ 0.62
DDR1-231	ENST00000417521	MROH7	Q68CQ1	1323 aa		18.95	■□□□□ 0.62
DDR1-231	ENST00000417521	TRIM43B	A6NCK2	446 aa		18.95	■□□□□ 0.62
DDR1-231	ENST00000417521	ARVCF	O00192	962 aa		18.95	■□□□□ 0.62
DDR1-231	ENST00000417521	PQBP1	O60828	265 aa	Known RBP	18.95	■□□□□ 0.62
DDR1-231	ENST00000417521	HMGB1	P09429	215 aa	Known RBP	18.95	■□□□□ 0.62
DDR1-231	ENST00000417521	PTGS1	P23219	599 aa		18.95	■□□□□ 0.62
DDR1-231	ENST00000417521	HSPA4	P34932	840 aa		18.95	■□□□□ 0.62
DDR1-231	ENST00000417521	TTLL4	Q14679	1199 aa		18.95	■□□□□ 0.62
DDR1-231	ENST00000417521	PPP2R5B	Q15173	497 aa		18.95	■□□□□ 0.62
DDR1-231	ENST00000417521	ADCK5	Q3MIX3	580 aa		18.95	■□□□□ 0.62
DDR1-231	ENST00000417521	CXCL17	Q6UXB2	119 aa		18.95	■□□□□ 0.62
DDR1-231	ENST00000417521	TRIM43	Q96BQ3	446 aa	Predicted RBP	18.95	■□□□□ 0.62
DDR1-231	ENST00000417521	SEZ6L	Q9BYH1	1024 aa		18.95	■□□□□ 0.62
DDR1-231	ENST00000417521	PXMP2	Q9NR77	195 aa		18.95	■□□□□ 0.62
DDR1-231	ENST00000417521	GCOM1	H8Y6P7	765 aa	Predicted RBP	18.94	■□□□□ 0.62
DDR1-231	ENST00000417521	EIF3J	O75822	258 aa	Known RBP	18.94	■□□□□ 0.62
DDR1-231	ENST00000417521	NR3C2	P08235	984 aa		18.94	■□□□□ 0.62
DDR1-231	ENST00000417521	POLR2M	P0CAP2	368 aa		18.94	■□□□□ 0.62
DDR1-231	ENST00000417521	TXN	P10599	105 aa	Known RBP	18.94	■□□□□ 0.62
DDR1-231	ENST00000417521	SYNE3	Q6ZMZ3	975 aa		18.94	■□□□□ 0.62
DDR1-231	ENST00000417521	SH3RF1	Q7Z6J0	888 aa		18.94	■□□□□ 0.62
DDR1-231	ENST00000417521	TDH	Q8IZJ6	230 aa		18.94	■□□□□ 0.62
DDR1-231	ENST00000417521	SRBD1	Q8N5C6	995 aa	Known RBP	18.94	■□□□□ 0.62
DDR1-231	ENST00000417521	FANCB	Q8NB91	859 aa		18.94	■□□□□ 0.62
DDR1-231	ENST00000417521	KIAA0355	O15063	1070 aa		18.93	■□□□□ 0.62
DDR1-231	ENST00000417521	EPB41L2	O43491	1005 aa	Known RBP	18.93	■□□□□ 0.62
DDR1-231	ENST00000417521	EIF2AK2	P19525	551 aa	Known RBP	18.93	■□□□□ 0.62
DDR1-231	ENST00000417521	CPT1A	P50416	773 aa		18.93	■□□□□ 0.62
DDR1-231	ENST00000417521	FAAP100	Q0VG06	881 aa		18.93	■□□□□ 0.62
DDR1-231	ENST00000417521	BRDT	Q58F21	947 aa	Predicted RBP	18.93	■□□□□ 0.62
DDR1-231	ENST00000417521	CCDC62	Q6P9F0	684 aa		18.93	■□□□□ 0.62
DDR1-231	ENST00000417521	SLC43A3	Q8NBI5	491 aa		18.93	■□□□□ 0.62
DDR1-231	ENST00000417521	OR6J1	Q8NGC5	347 aa		18.93	■□□□□ 0.62
DDR1-231	ENST00000417521	TMEM39A	Q9NV64	488 aa		18.93	■□□□□ 0.62
DDR1-231	ENST00000417521	POLR3E	Q9NVU0	708 aa		18.93	■□□□□ 0.62
DDR1-231	ENST00000417521	SEC63	Q9UGP8	760 aa	Known RBP	18.93	■□□□□ 0.62
DDR1-231	ENST00000417521	PLEKHA8P1	O95397	391 aa		18.92	■□□□□ 0.62
DDR1-231	ENST00000417521	RXRA	P19793	462 aa		18.92	■□□□□ 0.62
DDR1-231	ENST00000417521	HOXA13	P31271	388 aa	Predicted RBP	18.92	■□□□□ 0.62
DDR1-231	ENST00000417521	PIBF1	Q8WXW3	757 aa		18.92	■□□□□ 0.62
DDR1-231	ENST00000417521	PDCD2L	Q9BRP1	358 aa		18.92	■□□□□ 0.62
DDR1-231	ENST00000417521		A6NJR5	290 aa		18.91	■□□□□ 0.62
DDR1-231	ENST00000417521	LRIT3	Q3SXY7	679 aa		18.91	■□□□□ 0.62
DDR1-231	ENST00000417521	APOA5	Q6Q788	366 aa		18.91	■□□□□ 0.62
DDR1-231	ENST00000417521	SEPT14	Q6ZU15	432 aa		18.91	■□□□□ 0.62
DDR1-231	ENST00000417521	MICU3	Q86XE3	530 aa		18.91	■□□□□ 0.62
DDR1-231	ENST00000417521	BAD	Q92934	168 aa		18.91	■□□□□ 0.62
DDR1-231	ENST00000417521	SNX14	Q9Y5W7	946 aa		18.91	■□□□□ 0.62
DDR1-231	ENST00000417521	EIF5B	O60841	1220 aa	Known RBP	18.9	■□□□□ 0.62
DDR1-231	ENST00000417521	ARIH2	O95376	493 aa		18.9	■□□□□ 0.62
DDR1-231	ENST00000417521	RAG1	P15918	1043 aa		18.9	■□□□□ 0.62
DDR1-231	ENST00000417521	ITGA7	Q13683	1181 aa		18.9	■□□□□ 0.62
DDR1-231	ENST00000417521	TMTC3	Q6ZXV5	915 aa		18.9	■□□□□ 0.62
DDR1-231	ENST00000417521	VSIG10L	Q86VR7	867 aa		18.9	■□□□□ 0.62
DDR1-231	ENST00000417521	FAM126B	Q8IXS8	530 aa		18.9	■□□□□ 0.62
DDR1-231	ENST00000417521	COPS5	Q92905	334 aa		18.9	■□□□□ 0.62
DDR1-231	ENST00000417521	TCEANC2	Q96MN5	208 aa		18.9	■□□□□ 0.62
DDR1-231	ENST00000417521	RBM28	Q9NW13	759 aa	Known RBP	18.9	■□□□□ 0.62
DDR1-231	ENST00000417521	TLR3	O15455	904 aa	Known RBP	18.9	■□□□□ 0.62
DDR1-231	ENST00000417521	KPNA6	O60684	536 aa		18.9	■□□□□ 0.62
DDR1-231	ENST00000417521	ITGB8	P26012	769 aa		18.9	■□□□□ 0.62
DDR1-231	ENST00000417521	PURA	Q00577	322 aa	Known RBP	18.9	■□□□□ 0.62
DDR1-231	ENST00000417521	PGM5	Q15124	567 aa		18.9	■□□□□ 0.62
DDR1-231	ENST00000417521	RAB11FIP4	Q86YS3	637 aa		18.9	■□□□□ 0.62
DDR1-231	ENST00000417521	CMTR1	Q8N1G2	835 aa	Known RBP	18.9	■□□□□ 0.62
DDR1-231	ENST00000417521	TBX21	Q9UL17	535 aa		18.9	■□□□□ 0.62
DDR1-231	ENST00000417521	BRPF3	Q9ULD4	1205 aa		18.9	■□□□□ 0.62
DDR1-231	ENST00000417521	GRIN2D	O15399	1336 aa		18.89	■□□□□ 0.61
DDR1-231	ENST00000417521	MCM3AP	O60318	1980 aa		18.89	■□□□□ 0.61
DDR1-231	ENST00000417521	ZBTB43	O43298	467 aa		18.89	■□□□□ 0.61
DDR1-231	ENST00000417521	GH1	P01241	217 aa		18.89	■□□□□ 0.61
DDR1-231	ENST00000417521	CD4	P01730	458 aa		18.89	■□□□□ 0.61
DDR1-231	ENST00000417521	RCAN1	P53805	252 aa		18.89	■□□□□ 0.61
DDR1-231	ENST00000417521	LY6K	Q17RY6	165 aa		18.89	■□□□□ 0.61
DDR1-231	ENST00000417521	FCHSD1	Q86WN1	690 aa		18.89	■□□□□ 0.61
DDR1-231	ENST00000417521	BACH2	Q9BYV9	841 aa		18.89	■□□□□ 0.61

Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms