RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 SEPT14Q6ZU15 432 aa13.54□□□□□ -0.24
USP4-204ENST00000416417 CYB5R4Q7L1T6 521 aa13.54□□□□□ -0.24
USP4-204ENST00000416417 DEFB128Q7Z7B8 93 aa13.54□□□□□ -0.24
USP4-204ENST00000416417 HERVK_113Q902F9 699 aa13.54□□□□□ -0.24
USP4-204ENST00000416417 DSCC1Q9BVC3 393 aa13.54□□□□□ -0.24
USP4-204ENST00000416417 GPHNQ9NQX3 736 aaPredicted RBP13.54□□□□□ -0.24
USP4-204ENST00000416417 POLR3EQ9NVU0 708 aa13.54□□□□□ -0.24
USP4-204ENST00000416417 YBX2Q9Y2T7 364 aaKnown RBP13.54□□□□□ -0.24
USP4-204ENST00000416417 SUPT16HQ9Y5B9 1047 aaKnown RBP13.54□□□□□ -0.24
USP4-204ENST00000416417 LAMA4Q16363 1823 aa13.53□□□□□ -0.24
USP4-204ENST00000416417 TMEM265A0A087WTH1 108 aa13.53□□□□□ -0.24
USP4-204ENST00000416417 ZBBXA8MT70 800 aa13.53□□□□□ -0.24
USP4-204ENST00000416417 CPT1AP50416 773 aa13.53□□□□□ -0.24
USP4-204ENST00000416417 CHST3Q7LGC8 479 aa13.53□□□□□ -0.24
USP4-204ENST00000416417 DNERQ8NFT8 737 aa13.53□□□□□ -0.24
USP4-204ENST00000416417 SYTL5Q8TDW5 730 aaPredicted RBP13.53□□□□□ -0.24
USP4-204ENST00000416417 SCFD2Q8WU76 684 aa13.53□□□□□ -0.24
USP4-204ENST00000416417 MTG1Q9BT17 334 aaPredicted RBP13.53□□□□□ -0.24
USP4-204ENST00000416417 JMJD4Q9H9V9 463 aa13.53□□□□□ -0.24
USP4-204ENST00000416417 CHD9Q3L8U1 2897 aa13.53□□□□□ -0.24
USP4-204ENST00000416417 HIP1O00291 1037 aa13.52□□□□□ -0.25
USP4-204ENST00000416417 SORBS3O60504 671 aa13.52□□□□□ -0.25
USP4-204ENST00000416417 PARP1P09874 1014 aaKnown RBP13.52□□□□□ -0.25
USP4-204ENST00000416417 EIF2AK2P19525 551 aaKnown RBP13.52□□□□□ -0.25
USP4-204ENST00000416417 TTLL4Q14679 1199 aa13.52□□□□□ -0.25
USP4-204ENST00000416417 AFG1LQ8WV93 481 aa13.52□□□□□ -0.25
USP4-204ENST00000416417 ANKS1AQ92625 1134 aa13.52□□□□□ -0.25
USP4-204ENST00000416417 UBAC1Q9BSL1 405 aa13.52□□□□□ -0.25
USP4-204ENST00000416417 TAF6LQ9Y6J9 622 aa13.52□□□□□ -0.25
USP4-204ENST00000416417 ABCB11O95342 1321 aa13.52□□□□□ -0.25
USP4-204ENST00000416417 PPP1R11O60927 126 aaPredicted RBP13.51□□□□□ -0.25
USP4-204ENST00000416417 PTH1RQ03431 593 aa13.51□□□□□ -0.25
USP4-204ENST00000416417 ADGRE1Q14246 886 aa13.51□□□□□ -0.25
USP4-204ENST00000416417 CCDC85BQ15834 202 aaPredicted RBP13.51□□□□□ -0.25
USP4-204ENST00000416417 ASPRV1Q53RT3 343 aa13.51□□□□□ -0.25
USP4-204ENST00000416417 FBXO11Q86XK2 927 aa13.51□□□□□ -0.25
USP4-204ENST00000416417 ZFP91Q96JP5 570 aaPredicted RBP13.51□□□□□ -0.25
USP4-204ENST00000416417 SENP2Q9HC62 589 aa13.51□□□□□ -0.25
USP4-204ENST00000416417 CTNNA3Q9UI47 895 aa13.51□□□□□ -0.25
USP4-204ENST00000416417 MSRAQ9UJ68 235 aa13.51□□□□□ -0.25
USP4-204ENST00000416417 PNMA2Q9UL42 364 aa13.51□□□□□ -0.25
USP4-204ENST00000416417 LOC102724159A0A0B4J2E5 919 aa13.5□□□□□ -0.25
USP4-204ENST00000416417 A6NJR5 290 aa13.5□□□□□ -0.25
USP4-204ENST00000416417 OPLAHO14841 1288 aa13.5□□□□□ -0.25
USP4-204ENST00000416417 CFBP00751 764 aa13.5□□□□□ -0.25
USP4-204ENST00000416417 IGFBP4P22692 258 aa13.5□□□□□ -0.25
USP4-204ENST00000416417 PWP2Q15269 919 aaKnown RBP13.5□□□□□ -0.25
USP4-204ENST00000416417 SEC23AQ15436 765 aa13.5□□□□□ -0.25
USP4-204ENST00000416417 SLC35G1Q2M3R5 365 aa13.5□□□□□ -0.25
USP4-204ENST00000416417 CCDC178Q5BJE1 867 aa13.5□□□□□ -0.25
USP4-204ENST00000416417 IFIT1BQ5T764 474 aaKnown RBP13.5□□□□□ -0.25
USP4-204ENST00000416417 TTC22Q5TAA0 569 aa13.5□□□□□ -0.25
USP4-204ENST00000416417 CCDC62Q6P9F0 684 aa13.5□□□□□ -0.25
USP4-204ENST00000416417 RGS22Q8NE09 1264 aa13.5□□□□□ -0.25
USP4-204ENST00000416417 RMDN3Q96TC7 470 aa13.5□□□□□ -0.25
USP4-204ENST00000416417 MPHOSPH6Q99547 160 aaKnown RBP13.5□□□□□ -0.25
USP4-204ENST00000416417 KRT23Q9C075 422 aa13.5□□□□□ -0.25
USP4-204ENST00000416417 NKRFO15226 690 aaKnown RBP eCLIP13.49□□□□□ -0.25
USP4-204ENST00000416417 ARHGAP1Q07960 439 aa13.49□□□□□ -0.25
USP4-204ENST00000416417 BRDTQ58F21 947 aaPredicted RBP13.49□□□□□ -0.25
USP4-204ENST00000416417 ARHGEF16Q5VV41 709 aa13.49□□□□□ -0.25
USP4-204ENST00000416417 NSUN6Q8TEA1 469 aaKnown RBP13.49□□□□□ -0.25
USP4-204ENST00000416417 GAS2L1Q99501 681 aaPredicted RBP13.49□□□□□ -0.25
USP4-204ENST00000416417 MTIF3Q9H2K0 278 aaKnown RBP13.49□□□□□ -0.25
USP4-204ENST00000416417 MRPL11Q9Y3B7 192 aaKnown RBP13.49□□□□□ -0.25
USP4-204ENST00000416417 SLC4A7Q9Y6M7 1214 aa13.49□□□□□ -0.25
USP4-204ENST00000416417 VCANP13611 3396 aa13.49□□□□□ -0.25
USP4-204ENST00000416417 RAD50Q92878 1312 aa13.49□□□□□ -0.25
USP4-204ENST00000416417 KLRF2D3W0D1 207 aa13.49□□□□□ -0.25
USP4-204ENST00000416417 MMP3P08254 477 aa13.49□□□□□ -0.25
USP4-204ENST00000416417 SUPT20HL2P0C7V6 817 aa13.49□□□□□ -0.25
USP4-204ENST00000416417 HOXA13P31271 388 aaPredicted RBP13.49□□□□□ -0.25
USP4-204ENST00000416417 RAB30Q15771 203 aa13.49□□□□□ -0.25
USP4-204ENST00000416417 STXBP2Q15833 593 aa13.49□□□□□ -0.25
USP4-204ENST00000416417 HOMER1Q86YM7 354 aa13.49□□□□□ -0.25
USP4-204ENST00000416417 RPUSD2Q8IZ73 545 aaKnown RBP13.49□□□□□ -0.25
USP4-204ENST00000416417 PIBF1Q8WXW3 757 aa13.49□□□□□ -0.25
USP4-204ENST00000416417 SEZ6LQ9BYH1 1024 aa13.49□□□□□ -0.25
USP4-204ENST00000416417 CNNM2Q9H8M5 875 aa13.49□□□□□ -0.25
USP4-204ENST00000416417 SLC28A3Q9HAS3 691 aa13.49□□□□□ -0.25
USP4-204ENST00000416417 MAD2L2Q9UI95 211 aa13.49□□□□□ -0.25
USP4-204ENST00000416417 SCN5AQ14524 2016 aa13.48□□□□□ -0.25
USP4-204ENST00000416417 GBF1Q92538 1859 aa13.48□□□□□ -0.25
USP4-204ENST00000416417 B4DLN1 442 aa13.48□□□□□ -0.25
USP4-204ENST00000416417 RFXAPO00287 272 aa13.48□□□□□ -0.25
USP4-204ENST00000416417 GH1P01241 217 aa13.48□□□□□ -0.25
USP4-204ENST00000416417 CYP21A2P08686 494 aa13.48□□□□□ -0.25
USP4-204ENST00000416417 MYCLP12524 364 aaPredicted RBP13.48□□□□□ -0.25
USP4-204ENST00000416417 MRPL12P52815 198 aaKnown RBP13.48□□□□□ -0.25
USP4-204ENST00000416417 GDF6Q6KF10 455 aaPredicted RBP13.48□□□□□ -0.25
USP4-204ENST00000416417 NFRKBQ6P4R8 1299 aa13.48□□□□□ -0.25
USP4-204ENST00000416417 MCF2L2Q86YR7 1114 aa13.48□□□□□ -0.25
USP4-204ENST00000416417 IL31RAQ8NI17 732 aa13.48□□□□□ -0.25
USP4-204ENST00000416417 KAT2BQ92831 832 aa13.48□□□□□ -0.25
USP4-204ENST00000416417 ALG1Q9BT22 464 aa13.48□□□□□ -0.25
USP4-204ENST00000416417 FTOQ9C0B1 505 aaKnown RBP eCLIP13.48□□□□□ -0.25
USP4-204ENST00000416417 CERS4Q9HA82 394 aa13.48□□□□□ -0.25
USP4-204ENST00000416417 PXMP2Q9NR77 195 aa13.48□□□□□ -0.25
USP4-204ENST00000416417 NOD1Q9Y239 953 aa13.48□□□□□ -0.25
USP4-204ENST00000416417 CUL9Q8IWT3 2517 aa13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms