RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 NOP53Q9NZM5 478 aaKnown RBP6.62□□□□□ -1.35
SCN1A-203ENST00000409050 ANAPC5Q9UJX4 755 aa6.62□□□□□ -1.35
SCN1A-203ENST00000409050 ADAM9Q13443 819 aa6.62□□□□□ -1.35
SCN1A-203ENST00000409050 RPAINQ86UA6 219 aa6.62□□□□□ -1.35
SCN1A-203ENST00000409050 GCOM2Q9BZD3 368 aaPredicted RBP6.62□□□□□ -1.35
SCN1A-203ENST00000409050 PSTPIP2Q9H939 334 aa6.62□□□□□ -1.35
SCN1A-203ENST00000409050 TMEM63CQ9P1W3 806 aa6.62□□□□□ -1.35
SCN1A-203ENST00000409050 LEMD3Q9Y2U8 911 aa6.62□□□□□ -1.35
SCN1A-203ENST00000409050 ARHGEF5Q12774 1597 aa6.62□□□□□ -1.35
SCN1A-203ENST00000409050 CCNE1P24864 410 aa6.62□□□□□ -1.35
SCN1A-203ENST00000409050 MSH2P43246 934 aa6.62□□□□□ -1.35
SCN1A-203ENST00000409050 MYL7Q01449 175 aa6.62□□□□□ -1.35
SCN1A-203ENST00000409050 PPP1R18Q6NYC8 613 aa6.62□□□□□ -1.35
SCN1A-203ENST00000409050 NACC1Q96RE7 527 aa6.62□□□□□ -1.35
SCN1A-203ENST00000409050 TEX12Q9BXU0 123 aa6.62□□□□□ -1.35
SCN1A-203ENST00000409050 TMEM60Q9H2L4 133 aa6.62□□□□□ -1.35
SCN1A-203ENST00000409050 RRP15Q9Y3B9 282 aaKnown RBP6.62□□□□□ -1.35
SCN1A-203ENST00000409050 PTPRTO14522 1441 aa6.62□□□□□ -1.35
SCN1A-203ENST00000409050 MCF2LO15068 1137 aa6.62□□□□□ -1.35
SCN1A-203ENST00000409050 KIF1CO43896 1103 aaKnown RBP6.62□□□□□ -1.35
SCN1A-203ENST00000409050 PHEXP78562 749 aa6.62□□□□□ -1.35
SCN1A-203ENST00000409050 SLFN12LQ6IEE8 588 aa6.62□□□□□ -1.35
SCN1A-203ENST00000409050 RSBN1LQ6PCB5 846 aaPredicted RBP6.62□□□□□ -1.35
SCN1A-203ENST00000409050 DPH6Q7L8W6 267 aa6.62□□□□□ -1.35
SCN1A-203ENST00000409050 ARHGEF25Q86VW2 580 aa6.62□□□□□ -1.35
SCN1A-203ENST00000409050 NDUFAF2Q8N183 169 aa6.62□□□□□ -1.35
SCN1A-203ENST00000409050 TMCO5AQ8N6Q1 288 aa6.62□□□□□ -1.35
SCN1A-203ENST00000409050 TSPYL6Q8N831 410 aa6.62□□□□□ -1.35
SCN1A-203ENST00000409050 TRIM45Q9H8W5 580 aaPredicted RBP6.62□□□□□ -1.35
SCN1A-203ENST00000409050 SPTLC3Q9NUV7 552 aa6.62□□□□□ -1.35
SCN1A-203ENST00000409050 SENP1Q9P0U3 644 aa6.62□□□□□ -1.35
SCN1A-203ENST00000409050 REREQ9P2R6 1566 aa6.62□□□□□ -1.35
SCN1A-203ENST00000409050 STK36Q9NRP7 1315 aa6.62□□□□□ -1.35
SCN1A-203ENST00000409050 GOLGA8TH3BQL2 631 aa6.61□□□□□ -1.35
SCN1A-203ENST00000409050 SMAPO00193 183 aa6.61□□□□□ -1.35
SCN1A-203ENST00000409050 LDHAP00338 332 aaKnown RBP6.61□□□□□ -1.35
SCN1A-203ENST00000409050 GOLGA8HP0CJ92 632 aa6.61□□□□□ -1.35
SCN1A-203ENST00000409050 EIF4A1P60842 406 aaKnown RBP6.61□□□□□ -1.35
SCN1A-203ENST00000409050 TFAP4Q01664 338 aa6.61□□□□□ -1.35
SCN1A-203ENST00000409050 CENPUQ71F23 418 aa6.61□□□□□ -1.35
SCN1A-203ENST00000409050 FBXO11Q86XK2 927 aa6.61□□□□□ -1.35
SCN1A-203ENST00000409050 MTBPQ96DY7 904 aa6.61□□□□□ -1.35
SCN1A-203ENST00000409050 PPP1R13BQ96KQ4 1090 aa6.61□□□□□ -1.35
SCN1A-203ENST00000409050 TUBGCP2Q9BSJ2 902 aa6.61□□□□□ -1.35
SCN1A-203ENST00000409050 TRIM62Q9BVG3 475 aa6.61□□□□□ -1.35
SCN1A-203ENST00000409050 NACA2Q9H009 215 aa6.61□□□□□ -1.35
SCN1A-203ENST00000409050 RRAGDQ9NQL2 400 aaPredicted RBP6.61□□□□□ -1.35
SCN1A-203ENST00000409050 FAM207AQ9NSI2 230 aaPredicted RBP6.61□□□□□ -1.35
SCN1A-203ENST00000409050 STK32BQ9NY57 414 aa6.61□□□□□ -1.35
SCN1A-203ENST00000409050 ZNF215Q9UL58 517 aaPredicted RBP6.61□□□□□ -1.35
SCN1A-203ENST00000409050 PCDHA4Q9UN74 947 aa6.61□□□□□ -1.35
SCN1A-203ENST00000409050 SYNGAP1Q96PV0 1343 aa6.61□□□□□ -1.35
SCN1A-203ENST00000409050 ARHGAP10A1A4S6 786 aa6.61□□□□□ -1.35
SCN1A-203ENST00000409050 TMEM191BP0C7N4 346 aa6.61□□□□□ -1.35
SCN1A-203ENST00000409050 SCP2P22307 547 aa6.61□□□□□ -1.35
SCN1A-203ENST00000409050 LIFRP42702 1097 aa6.61□□□□□ -1.35
SCN1A-203ENST00000409050 RASSF7Q02833 373 aa6.61□□□□□ -1.35
SCN1A-203ENST00000409050 CC2D2BQ6DHV5 1058 aa6.61□□□□□ -1.35
SCN1A-203ENST00000409050 ARMCX5Q6P1M9 558 aa6.61□□□□□ -1.35
SCN1A-203ENST00000409050 IFNL3Q8IZI9 196 aa6.61□□□□□ -1.35
SCN1A-203ENST00000409050 ANKRD42Q8N9B4 389 aa6.61□□□□□ -1.35
SCN1A-203ENST00000409050 KLHL29Q96CT2 875 aa6.61□□□□□ -1.35
SCN1A-203ENST00000409050 AMNQ9BXJ7 453 aa6.61□□□□□ -1.35
SCN1A-203ENST00000409050 TRIM31Q9BZY9 425 aa6.61□□□□□ -1.35
SCN1A-203ENST00000409050 STOML1Q9UBI4 398 aa6.61□□□□□ -1.35
SCN1A-203ENST00000409050 USTQ9Y2C2 406 aa6.61□□□□□ -1.35
SCN1A-203ENST00000409050 SYNMO15061 1565 aa6.61□□□□□ -1.35
SCN1A-203ENST00000409050 GCC2Q8IWJ2 1684 aa6.61□□□□□ -1.35
SCN1A-203ENST00000409050 ATP10AO60312 1499 aa6.61□□□□□ -1.35
SCN1A-203ENST00000409050 NEO1Q92859 1461 aa6.61□□□□□ -1.35
SCN1A-203ENST00000409050 GSTA1P08263 222 aa6.61□□□□□ -1.35
SCN1A-203ENST00000409050 KRT16P08779 473 aa6.61□□□□□ -1.35
SCN1A-203ENST00000409050 GSTA2P09210 222 aa6.61□□□□□ -1.35
SCN1A-203ENST00000409050 TAC1P20366 129 aa6.61□□□□□ -1.35
SCN1A-203ENST00000409050 MAGEA9P43362 315 aa6.61□□□□□ -1.35
SCN1A-203ENST00000409050 ME3Q16798 604 aa6.61□□□□□ -1.35
SCN1A-203ENST00000409050 KLC3Q6P597 504 aa6.61□□□□□ -1.35
SCN1A-203ENST00000409050 ANKRD36BP1Q96IX9 119 aa6.61□□□□□ -1.35
SCN1A-203ENST00000409050 ZMAT2Q96NC0 199 aaKnown RBP6.61□□□□□ -1.35
SCN1A-203ENST00000409050 FOXP3Q9BZS1 431 aa6.61□□□□□ -1.35
SCN1A-203ENST00000409050 ZNF148Q9UQR1 794 aa6.61□□□□□ -1.35
SCN1A-203ENST00000409050 A0A1B0GW55 424 aa6.61□□□□□ -1.35
SCN1A-203ENST00000409050 NEURL1BA8MQ27 555 aa6.61□□□□□ -1.35
SCN1A-203ENST00000409050 CAPN9O14815 690 aa6.61□□□□□ -1.35
SCN1A-203ENST00000409050 TLR3O15455 904 aaKnown RBP6.61□□□□□ -1.35
SCN1A-203ENST00000409050 GFPT2O94808 682 aa6.61□□□□□ -1.35
SCN1A-203ENST00000409050 ADAMTS2O95450 1211 aa6.61□□□□□ -1.35
SCN1A-203ENST00000409050 DUX4L2P0CJ85 424 aa6.61□□□□□ -1.35
SCN1A-203ENST00000409050 DUX4L3P0CJ86 424 aa6.61□□□□□ -1.35
SCN1A-203ENST00000409050 DUX4L4P0CJ87 422 aa6.61□□□□□ -1.35
SCN1A-203ENST00000409050 DUX4L5P0CJ88 424 aa6.61□□□□□ -1.35
SCN1A-203ENST00000409050 DUX4L6P0CJ89 424 aa6.61□□□□□ -1.35
SCN1A-203ENST00000409050 DUX4L7P0CJ90 424 aa6.61□□□□□ -1.35
SCN1A-203ENST00000409050 KCNA6P17658 529 aa6.61□□□□□ -1.35
SCN1A-203ENST00000409050 CTSWP56202 376 aa6.61□□□□□ -1.35
SCN1A-203ENST00000409050 KLHL38Q2WGJ6 581 aa6.61□□□□□ -1.35
SCN1A-203ENST00000409050 DPP8Q6V1X1 898 aaPredicted RBP6.61□□□□□ -1.35
SCN1A-203ENST00000409050 ZBTB38Q8NAP3 1195 aaPredicted RBP6.61□□□□□ -1.35
SCN1A-203ENST00000409050 LARP4BQ92615 738 aaKnown RBP6.61□□□□□ -1.35
SCN1A-203ENST00000409050 RBM41Q96IZ5 413 aaKnown RBP6.61□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms