RNA–Protein interactions for RNA: ENST00000409025.5

USP39-202, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5 BASIC

Gene USP39, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-202ENST00000409025 GRB10Q13322 594 aa21.31■■□□□ 1
USP39-202ENST00000409025 SNX29Q8TEQ0 813 aa21.31■■□□□ 1
USP39-202ENST00000409025 CCDC47Q96A33 483 aaKnown RBP21.31■■□□□ 1
USP39-202ENST00000409025 P2RX7Q99572 595 aaKnown RBP21.31■■□□□ 1
USP39-202ENST00000409025 NBPF12Q5TAG4 269 aaPredicted RBP21.31■■□□□ 1
USP39-202ENST00000409025 TMC6Q7Z403 805 aa21.31■■□□□ 1
USP39-202ENST00000409025 LPAR1Q92633 364 aa21.31■■□□□ 1
USP39-202ENST00000409025 C7orf25Q9BPX7 421 aa21.31■■□□□ 1
USP39-202ENST00000409025 KIAA1683Q9H0B3 1180 aa21.31■■□□□ 1
USP39-202ENST00000409025 MRPL11Q9Y3B7 192 aaKnown RBP21.31■■□□□ 1
USP39-202ENST00000409025 DICER1Q9UPY3 1922 aaKnown RBP21.3■■□□□ 1
USP39-202ENST00000409025 WDR46O15213 610 aaKnown RBP21.3■■□□□ 1
USP39-202ENST00000409025 HOXA13P31271 388 aaPredicted RBP21.3■■□□□ 1
USP39-202ENST00000409025 STX17P56962 302 aa21.3■■□□□ 1
USP39-202ENST00000409025 KMT5BQ4FZB7 885 aa21.3■■□□□ 1
USP39-202ENST00000409025 ANGEL2Q5VTE6 544 aaKnown RBP21.3■■□□□ 1
USP39-202ENST00000409025 SLFN12Q8IYM2 578 aa21.3■■□□□ 1
USP39-202ENST00000409025 GPC2Q8N158 579 aa21.3■■□□□ 1
USP39-202ENST00000409025 KIAA1524Q8TCG1 905 aa21.3■■□□□ 1
USP39-202ENST00000409025 CACTINQ8WUQ7 758 aaKnown RBP21.3■■□□□ 1
USP39-202ENST00000409025 PNMA5Q96PV4 448 aa21.3■■□□□ 1
USP39-202ENST00000409025 KCNMB3Q9NPA1 279 aa21.3■■□□□ 1
USP39-202ENST00000409025 GPRC5DQ9NZD1 345 aa21.3■■□□□ 1
USP39-202ENST00000409025 PYCARDQ9ULZ3 195 aa21.3■■□□□ 1
USP39-202ENST00000409025 CTNND2Q9UQB3 1225 aa21.3■■□□□ 1
USP39-202ENST00000409025 KLRC4O43908 158 aa21.29■■□□□ 1
USP39-202ENST00000409025 LRMPQ12912 555 aa21.29■■□□□ 1
USP39-202ENST00000409025 DHX8Q14562 1220 aaKnown RBP21.29■■□□□ 1
USP39-202ENST00000409025 Q4G0T1 1027 aa21.29■■□□□ 1
USP39-202ENST00000409025 SAMD1Q6SPF0 538 aaPredicted RBP21.29■■□□□ 1
USP39-202ENST00000409025 SV2BQ7L1I2 683 aa21.29■■□□□ 1
USP39-202ENST00000409025 LRRC8AQ8IWT6 810 aa21.29■■□□□ 1
USP39-202ENST00000409025 TRIM9Q9C026 710 aa21.29■■□□□ 1
USP39-202ENST00000409025 SAMSN1Q9NSI8 373 aaKnown RBP21.29■■□□□ 1
USP39-202ENST00000409025 FBXO28Q9NVF7 368 aa21.29■■□□□ 1
USP39-202ENST00000409025 RWDD2AQ9UIY3 292 aa21.29■■□□□ 1
USP39-202ENST00000409025 GCOM1H8Y6P7 765 aaPredicted RBP21.29■■□□□ 1
USP39-202ENST00000409025 RHOBTB3O94955 611 aa21.29■■□□□ 1
USP39-202ENST00000409025 POLR2MP0CAP2 368 aa21.29■■□□□ 1
USP39-202ENST00000409025 HSP90AA4PQ58FG1 418 aa21.29■■□□□ 1
USP39-202ENST00000409025 ABCB11O95342 1321 aa21.29■■□□□ 1
USP39-202ENST00000409025 TBX3O15119 743 aa21.28■■□□□ 1
USP39-202ENST00000409025 CFBP00751 764 aa21.28■■□□□ 1
USP39-202ENST00000409025 PAK1Q13153 545 aa21.28■■□□□ 1
USP39-202ENST00000409025 NOLC1Q14978 699 aaKnown RBP eCLIP21.28■■□□□ 1
USP39-202ENST00000409025 TPD52L1Q16890 204 aaPredicted RBP21.28■■□□□ 1
USP39-202ENST00000409025 PRR16Q569H4 304 aa21.28■■□□□ 1
USP39-202ENST00000409025 TRPM4Q8TD43 1214 aa21.28■■□□□ 1
USP39-202ENST00000409025 NAP1L5Q96NT1 182 aaPredicted RBP21.28■■□□□ 1
USP39-202ENST00000409025 GTPBP4Q9BZE4 634 aaKnown RBP21.28■■□□□ 1
USP39-202ENST00000409025 GDAQ9Y2T3 454 aa21.28■■□□□ 1
USP39-202ENST00000409025 CYP3A4P08684 503 aa21.27■■□□□ 1
USP39-202ENST00000409025 INPP5BP32019 993 aa21.27■■□□□ 1
USP39-202ENST00000409025 CIITAP33076 1130 aa21.27■■□□□ 1
USP39-202ENST00000409025 ASIC1P78348 528 aa21.27■■□□□ 1
USP39-202ENST00000409025 TMEM119Q4V9L6 283 aa21.27■■□□□ 1
USP39-202ENST00000409025 FCHSD1Q86WN1 690 aa21.27■■□□□ 1
USP39-202ENST00000409025 LDHDQ86WU2 507 aa21.27■■□□□ 1
USP39-202ENST00000409025 LARP4BQ92615 738 aaKnown RBP21.27■■□□□ 1
USP39-202ENST00000409025 GJA10Q969M2 543 aa21.27■■□□□ 1
USP39-202ENST00000409025 BLOC1S4Q9NUP1 217 aa21.27■■□□□ 1
USP39-202ENST00000409025 KDM3AQ9Y4C1 1321 aa21.27■■□□□ 1
USP39-202ENST00000409025 SLC26A4O43511 780 aa21.27■■□□□ 1
USP39-202ENST00000409025 PRCPP42785 496 aa21.27■■□□□ 1
USP39-202ENST00000409025 STIM1Q13586 685 aa21.27■■□□□ 1
USP39-202ENST00000409025 PDZRN4Q6ZMN7 1036 aaPredicted RBP21.27■■□□□ 1
USP39-202ENST00000409025 PRPF38AQ8NAV1 312 aaKnown RBP21.27■■□□□ 1
USP39-202ENST00000409025 NELFBQ8WX92 580 aa21.27■■□□□ 1
USP39-202ENST00000409025 RAD54LQ92698 747 aa21.27■■□□□ 1
USP39-202ENST00000409025 NUDT12Q9BQG2 462 aa21.27■■□□□ 1
USP39-202ENST00000409025 SLF1Q9BQI6 1058 aa21.27■■□□□ 1
USP39-202ENST00000409025 LRRC27Q9C0I9 530 aa21.27■■□□□ 1
USP39-202ENST00000409025 DOCK1Q14185 1865 aa21.27■■□□□ 1
USP39-202ENST00000409025 SMCHD1A6NHR9 2005 aa21.26■□□□□ 0.99
USP39-202ENST00000409025 OFD1O75665 1012 aa21.26■□□□□ 0.99
USP39-202ENST00000409025 ZNF76P36508 570 aa21.26■□□□□ 0.99
USP39-202ENST00000409025 CCDC150Q8NCX0 1101 aa21.26■□□□□ 0.99
USP39-202ENST00000409025 GIMAP8Q8ND71 665 aaPredicted RBP21.26■□□□□ 0.99
USP39-202ENST00000409025 NT5C3AQ9H0P0 336 aa21.26■□□□□ 0.99
USP39-202ENST00000409025 EHMT1Q9H9B1 1298 aa21.26■□□□□ 0.99
USP39-202ENST00000409025 EXOC1Q9NV70 894 aa21.26■□□□□ 0.99
USP39-202ENST00000409025 ZNF112Q9UJU3 913 aa21.26■□□□□ 0.99
USP39-202ENST00000409025 CCT6AP40227 531 aaKnown RBP21.25■□□□□ 0.99
USP39-202ENST00000409025 USP14P54578 494 aa21.25■□□□□ 0.99
USP39-202ENST00000409025 MCM6Q14566 821 aa21.25■□□□□ 0.99
USP39-202ENST00000409025 ARID5BQ14865 1188 aa21.25■□□□□ 0.99
USP39-202ENST00000409025 CDKAL1Q5VV42 579 aa21.25■□□□□ 0.99
USP39-202ENST00000409025 VSTM4Q8IW00 320 aa21.25■□□□□ 0.99
USP39-202ENST00000409025 SCYL3Q8IZE3 742 aa21.25■□□□□ 0.99
USP39-202ENST00000409025 ADSSL1Q8N142 457 aa21.25■□□□□ 0.99
USP39-202ENST00000409025 ETNPPLQ8TBG4 499 aa21.25■□□□□ 0.99
USP39-202ENST00000409025 FAM20AQ96MK3 541 aa21.25■□□□□ 0.99
USP39-202ENST00000409025 FHDC1Q9C0D6 1143 aaPredicted RBP21.25■□□□□ 0.99
USP39-202ENST00000409025 PPP2R3BQ9Y5P8 575 aa21.25■□□□□ 0.99
USP39-202ENST00000409025 ICAM1P05362 532 aa21.25■□□□□ 0.99
USP39-202ENST00000409025 PDE4DQ08499 809 aa21.25■□□□□ 0.99
USP39-202ENST00000409025 HYIQ5T013 277 aa21.25■□□□□ 0.99
USP39-202ENST00000409025 C17orf53Q8N3J3 647 aaPredicted RBP21.25■□□□□ 0.99
USP39-202ENST00000409025 TBC1D5Q92609 795 aa21.25■□□□□ 0.99
USP39-202ENST00000409025 AS3MTQ9HBK9 375 aa21.25■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms