RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 TFIP11Q9UBB9 837 aaKnown RBP16.19■□□□□ 0.18
SKA1-202ENST00000398452 ZNF214Q9UL59 606 aaPredicted RBP16.19■□□□□ 0.18
SKA1-202ENST00000398452 CNPY2Q9Y2B0 182 aa16.19■□□□□ 0.18
SKA1-202ENST00000398452 POTEFA5A3E0 1075 aa16.18■□□□□ 0.18
SKA1-202ENST00000398452 CYP2C8P10632 490 aa16.18■□□□□ 0.18
SKA1-202ENST00000398452 VASPP50552 380 aaPredicted RBP16.18■□□□□ 0.18
SKA1-202ENST00000398452 NPY5RQ15761 445 aa16.18■□□□□ 0.18
SKA1-202ENST00000398452 INF2Q27J81 1249 aa16.18■□□□□ 0.18
SKA1-202ENST00000398452 TTC38Q5R3I4 469 aa16.18■□□□□ 0.18
SKA1-202ENST00000398452 ANO1Q5XXA6 986 aa16.18■□□□□ 0.18
SKA1-202ENST00000398452 NEK8Q86SG6 692 aa16.18■□□□□ 0.18
SKA1-202ENST00000398452 ANKRD35Q8N283 1001 aa16.18■□□□□ 0.18
SKA1-202ENST00000398452 FAM43AQ8N2R8 423 aa16.18■□□□□ 0.18
SKA1-202ENST00000398452 REPS2Q8NFH8 660 aa16.18■□□□□ 0.18
SKA1-202ENST00000398452 GPRC5AQ8NFJ5 357 aa16.18■□□□□ 0.18
SKA1-202ENST00000398452 TBCKQ8TEA7 893 aa16.18■□□□□ 0.18
SKA1-202ENST00000398452 ANO3Q9BYT9 981 aa16.18■□□□□ 0.18
SKA1-202ENST00000398452 POLR3EQ9NVU0 708 aa16.18■□□□□ 0.18
SKA1-202ENST00000398452 TMEM260Q9NX78 707 aa16.18■□□□□ 0.18
SKA1-202ENST00000398452 GPR25O00155 361 aa16.17■□□□□ 0.18
SKA1-202ENST00000398452 MARCH6O60337 910 aa16.17■□□□□ 0.18
SKA1-202ENST00000398452 ALDH1A1P00352 501 aa16.17■□□□□ 0.18
SKA1-202ENST00000398452 HOXA13P31271 388 aaPredicted RBP16.17■□□□□ 0.18
SKA1-202ENST00000398452 MCM4P33991 863 aa16.17■□□□□ 0.18
SKA1-202ENST00000398452 ZNF76P36508 570 aa16.17■□□□□ 0.18
SKA1-202ENST00000398452 LETM2Q2VYF4 491 aa16.17■□□□□ 0.18
SKA1-202ENST00000398452 IER5LQ5T953 404 aa16.17■□□□□ 0.18
SKA1-202ENST00000398452 KCNG4Q8TDN1 519 aa16.17■□□□□ 0.18
SKA1-202ENST00000398452 TNFRSF25Q93038 417 aa16.17■□□□□ 0.18
SKA1-202ENST00000398452 USP28Q96RU2 1077 aa16.17■□□□□ 0.18
SKA1-202ENST00000398452 MPHOSPH6Q99547 160 aaKnown RBP16.17■□□□□ 0.18
SKA1-202ENST00000398452 MROH8Q9H579 483 aa16.17■□□□□ 0.18
SKA1-202ENST00000398452 ZFYVE28Q9HCC9 887 aa16.17■□□□□ 0.18
SKA1-202ENST00000398452 RTEL1Q9NZ71 1219 aa16.17■□□□□ 0.18
SKA1-202ENST00000398452 BTBD7Q9P203 1132 aa16.17■□□□□ 0.18
SKA1-202ENST00000398452 M0R2N6 131 aa16.16■□□□□ 0.18
SKA1-202ENST00000398452 NFIBO00712 420 aa16.16■□□□□ 0.18
SKA1-202ENST00000398452 MEIS2O14770 477 aa16.16■□□□□ 0.18
SKA1-202ENST00000398452 YEATS4O95619 227 aa16.16■□□□□ 0.18
SKA1-202ENST00000398452 TAL1P17542 331 aaPredicted RBP16.16■□□□□ 0.18
SKA1-202ENST00000398452 CLK2P49760 499 aaKnown RBP16.16■□□□□ 0.18
SKA1-202ENST00000398452 ERVK-9P63128 1117 aa16.16■□□□□ 0.18
SKA1-202ENST00000398452 ERVK-24P63145 666 aa16.16■□□□□ 0.18
SKA1-202ENST00000398452 ORC2Q13416 577 aaPredicted RBP16.16■□□□□ 0.18
SKA1-202ENST00000398452 KCTD2Q14681 263 aa16.16■□□□□ 0.18
SKA1-202ENST00000398452 PFASO15067 1338 aa16.16■□□□□ 0.18
SKA1-202ENST00000398452 B4DLN1 442 aa16.15■□□□□ 0.18
SKA1-202ENST00000398452 CCNT1O60563 726 aaKnown RBP16.15■□□□□ 0.18
SKA1-202ENST00000398452 PRPF40AO75400 957 aaKnown RBP16.15■□□□□ 0.18
SKA1-202ENST00000398452 GCFC2P16383 781 aaKnown RBP16.15■□□□□ 0.18
SKA1-202ENST00000398452 ME1P48163 572 aa16.15■□□□□ 0.18
SKA1-202ENST00000398452 MUM1L1Q5H9M0 696 aa16.15■□□□□ 0.18
SKA1-202ENST00000398452 ANKRD13CQ8N6S4 541 aa16.15■□□□□ 0.18
SKA1-202ENST00000398452 SHCBP1Q8NEM2 672 aa16.15■□□□□ 0.18
SKA1-202ENST00000398452 CLEC4DQ8WXI8 215 aa16.15■□□□□ 0.18
SKA1-202ENST00000398452 PGBD1Q96JS3 809 aa16.15■□□□□ 0.18
SKA1-202ENST00000398452 MOV10L1Q9BXT6 1211 aaKnown RBP16.15■□□□□ 0.18
SKA1-202ENST00000398452 GDPD2Q9HCC8 539 aa16.15■□□□□ 0.18
SKA1-202ENST00000398452 SCUBE2Q9NQ36 999 aa16.15■□□□□ 0.18
SKA1-202ENST00000398452 RBPJLQ9UBG7 517 aa16.15■□□□□ 0.18
SKA1-202ENST00000398452 IVNS1ABPQ9Y6Y0 642 aa16.15■□□□□ 0.18
SKA1-202ENST00000398452 FAM205CA6NFA0 338 aa16.14■□□□□ 0.17
SKA1-202ENST00000398452 SPTLC2O15270 562 aa16.14■□□□□ 0.17
SKA1-202ENST00000398452 FKTNO75072 461 aa16.14■□□□□ 0.17
SKA1-202ENST00000398452 ERCC3P19447 782 aa16.14■□□□□ 0.17
SKA1-202ENST00000398452 MCM7P33993 719 aa16.14■□□□□ 0.17
SKA1-202ENST00000398452 NASPP49321 788 aaPredicted RBP16.14■□□□□ 0.17
SKA1-202ENST00000398452 HSD17B4P51659 736 aa16.14■□□□□ 0.17
SKA1-202ENST00000398452 USP11P51784 963 aa16.14■□□□□ 0.17
SKA1-202ENST00000398452 RPS6P62753 249 aaKnown RBP16.14■□□□□ 0.17
SKA1-202ENST00000398452 NFKBIBQ15653 356 aa16.14■□□□□ 0.17
SKA1-202ENST00000398452 ZNF174Q15697 407 aa16.14■□□□□ 0.17
SKA1-202ENST00000398452 FAM110CQ1W6H9 321 aa16.14■□□□□ 0.17
SKA1-202ENST00000398452 EARS2Q5JPH6 523 aaKnown RBP16.14■□□□□ 0.17
SKA1-202ENST00000398452 ARHGEF16Q5VV41 709 aa16.14■□□□□ 0.17
SKA1-202ENST00000398452 LEO1Q8WVC0 666 aaPredicted RBP16.14■□□□□ 0.17
SKA1-202ENST00000398452 PTPN18Q99952 460 aa16.14■□□□□ 0.17
SKA1-202ENST00000398452 RIPK3Q9Y572 518 aa16.14■□□□□ 0.17
SKA1-202ENST00000398452 CLIC4Q9Y696 253 aa16.14■□□□□ 0.17
SKA1-202ENST00000398452 ELP1O95163 1332 aa16.14■□□□□ 0.17
SKA1-202ENST00000398452 IGF2BP3O00425 579 aaKnown RBP eCLIP16.13■□□□□ 0.17
SKA1-202ENST00000398452 LAD1O00515 517 aa16.13■□□□□ 0.17
SKA1-202ENST00000398452 OPLAHO14841 1288 aa16.13■□□□□ 0.17
SKA1-202ENST00000398452 FCER1AP12319 257 aa16.13■□□□□ 0.17
SKA1-202ENST00000398452 RGS19P49795 217 aa16.13■□□□□ 0.17
SKA1-202ENST00000398452 ARHGAP4P98171 946 aa16.13■□□□□ 0.17
SKA1-202ENST00000398452 BAATQ14032 418 aaPredicted RBP16.13■□□□□ 0.17
SKA1-202ENST00000398452 SLC39A14Q15043 492 aa16.13■□□□□ 0.17
SKA1-202ENST00000398452 LINC00301Q8NCQ3 95 aa16.13■□□□□ 0.17
SKA1-202ENST00000398452 SYTL5Q8TDW5 730 aaPredicted RBP16.13■□□□□ 0.17
SKA1-202ENST00000398452 MMP19Q99542 508 aa16.13■□□□□ 0.17
SKA1-202ENST00000398452 EIF4ENIF1Q9NRA8 985 aaKnown RBP16.13■□□□□ 0.17
SKA1-202ENST00000398452 MORF4L1Q9UBU8 362 aa16.13■□□□□ 0.17
SKA1-202ENST00000398452 ADD3Q9UEY8 706 aaKnown RBP16.13■□□□□ 0.17
SKA1-202ENST00000398452 RCOR1Q9UKL0 485 aa16.13■□□□□ 0.17
SKA1-202ENST00000398452 PCDHB6Q9Y5E3 794 aa16.13■□□□□ 0.17
SKA1-202ENST00000398452 NEMFO60524 1076 aa16.12■□□□□ 0.17
SKA1-202ENST00000398452 PPP6R2O75170 966 aa16.12■□□□□ 0.17
SKA1-202ENST00000398452 CNMDO75829 334 aa16.12■□□□□ 0.17
SKA1-202ENST00000398452 MAPK4P31152 587 aa16.12■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms