RNA–Protein interactions for RNA: ENST00000396521.3

EXOSC3-202, Transcript of exosome component 3, humanhuman

TSL 2 BASIC

Gene EXOSC3, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC3-202ENST00000396521 GPCPD1Q9NPB8 672 aa20.57■□□□□ 0.88
EXOSC3-202ENST00000396521 NOD1Q9Y239 953 aa20.57■□□□□ 0.88
EXOSC3-202ENST00000396521 PCDHB15Q9Y5E8 787 aa20.57■□□□□ 0.88
EXOSC3-202ENST00000396521 CA3P07451 260 aa20.56■□□□□ 0.88
EXOSC3-202ENST00000396521 SNHG28P0DPA3 235 aa20.56■□□□□ 0.88
EXOSC3-202ENST00000396521 BMP1P13497 986 aa20.56■□□□□ 0.88
EXOSC3-202ENST00000396521 ZNF543Q08ER8 600 aa20.56■□□□□ 0.88
EXOSC3-202ENST00000396521 CCDC178Q5BJE1 867 aa20.56■□□□□ 0.88
EXOSC3-202ENST00000396521 RRP12Q5JTH9 1297 aaKnown RBP20.56■□□□□ 0.88
EXOSC3-202ENST00000396521 DEFB128Q7Z7B8 93 aa20.56■□□□□ 0.88
EXOSC3-202ENST00000396521 CAGE1Q8TC20 777 aa20.56■□□□□ 0.88
EXOSC3-202ENST00000396521 FTOQ9C0B1 505 aaKnown RBP eCLIP20.56■□□□□ 0.881e-6■□□□□ 8.2
EXOSC3-202ENST00000396521 RNF41Q9H4P4 317 aaPredicted RBP20.56■□□□□ 0.88
EXOSC3-202ENST00000396521 SALL3Q9BXA9 1300 aa20.55■□□□□ 0.88
EXOSC3-202ENST00000396521 TXNP10599 105 aaKnown RBP20.55■□□□□ 0.88
EXOSC3-202ENST00000396521 MYOGP15173 224 aa20.55■□□□□ 0.88
EXOSC3-202ENST00000396521 MFAP1P55081 439 aaKnown RBP20.55■□□□□ 0.88
EXOSC3-202ENST00000396521 SLC30A10Q6XR72 485 aa20.55■□□□□ 0.88
EXOSC3-202ENST00000396521 MFSD6Q6ZSS7 791 aa20.55■□□□□ 0.88
EXOSC3-202ENST00000396521 AFAP1L1Q8TED9 768 aa20.55■□□□□ 0.88
EXOSC3-202ENST00000396521 MTCH2Q9Y6C9 303 aa20.55■□□□□ 0.88
EXOSC3-202ENST00000396521 FRMPD2Q68DX3 1309 aaPredicted RBP20.54■□□□□ 0.88
EXOSC3-202ENST00000396521 LRRC37A2A6NM11 1700 aa20.54■□□□□ 0.88
EXOSC3-202ENST00000396521 SKIV2LQ15477 1246 aaKnown RBP20.54■□□□□ 0.88
EXOSC3-202ENST00000396521 RASGRP2Q7LDG7 609 aa20.54■□□□□ 0.88
EXOSC3-202ENST00000396521 SESTD1Q86VW0 696 aa20.54■□□□□ 0.88
EXOSC3-202ENST00000396521 HERC6Q8IVU3 1022 aa20.54■□□□□ 0.88
EXOSC3-202ENST00000396521 MICALL1Q8N3F8 863 aa20.54■□□□□ 0.88
EXOSC3-202ENST00000396521 HSPD1P10809 573 aaKnown RBP20.53■□□□□ 0.88
EXOSC3-202ENST00000396521 KCNJ6P48051 423 aa20.53■□□□□ 0.88
EXOSC3-202ENST00000396521 ANKRD45Q5TZF3 282 aa20.53■□□□□ 0.88
EXOSC3-202ENST00000396521 DGKHQ86XP1 1220 aa20.53■□□□□ 0.88
EXOSC3-202ENST00000396521 ESR2Q92731 530 aa20.53■□□□□ 0.88
EXOSC3-202ENST00000396521 IWS1Q96ST2 819 aa20.53■□□□□ 0.88
EXOSC3-202ENST00000396521 LMCD1Q9NZU5 365 aa20.53■□□□□ 0.88
EXOSC3-202ENST00000396521 TRANK1O15050 2925 aa20.52■□□□□ 0.88
EXOSC3-202ENST00000396521 PDE1AP54750 535 aa20.52■□□□□ 0.88
EXOSC3-202ENST00000396521 TAP1Q03518 808 aa20.52■□□□□ 0.88
EXOSC3-202ENST00000396521 PTGISQ16647 500 aa20.52■□□□□ 0.88
EXOSC3-202ENST00000396521 CCDC62Q6P9F0 684 aa20.52■□□□□ 0.88
EXOSC3-202ENST00000396521 MCF2L2Q86YR7 1114 aa20.52■□□□□ 0.88
EXOSC3-202ENST00000396521 NSUN6Q8TEA1 469 aaKnown RBP20.52■□□□□ 0.88
EXOSC3-202ENST00000396521 EFCAB14O75071 495 aa20.51■□□□□ 0.87
EXOSC3-202ENST00000396521 GH1P01241 217 aa20.51■□□□□ 0.87
EXOSC3-202ENST00000396521 CASTP20810 708 aaKnown RBP20.51■□□□□ 0.87
EXOSC3-202ENST00000396521 ARIH1Q9Y4X5 557 aaPredicted RBP20.51■□□□□ 0.87
EXOSC3-202ENST00000396521 SCN10AQ9Y5Y9 1956 aa20.5■□□□□ 0.87
EXOSC3-202ENST00000396521 TLL1O43897 1013 aa20.5■□□□□ 0.87
EXOSC3-202ENST00000396521 RBL2Q08999 1139 aa20.5■□□□□ 0.87
EXOSC3-202ENST00000396521 STXBP2Q15833 593 aa20.5■□□□□ 0.87
EXOSC3-202ENST00000396521 IQCA1Q86XH1 822 aa20.5■□□□□ 0.87
EXOSC3-202ENST00000396521 HLA-CQ95604 372 aa20.5■□□□□ 0.87
EXOSC3-202ENST00000396521 ABCB11O95342 1321 aa20.5■□□□□ 0.87
EXOSC3-202ENST00000396521 XIRP2A4UGR9 3374 aa20.49■□□□□ 0.87
EXOSC3-202ENST00000396521 SELPP16109 830 aa20.49■□□□□ 0.87
EXOSC3-202ENST00000396521 TFF2Q03403 129 aa20.49■□□□□ 0.87
EXOSC3-202ENST00000396521 DGKDQ16760 1214 aa20.49■□□□□ 0.87
EXOSC3-202ENST00000396521 ARNTL2Q8WYA1 636 aa20.49■□□□□ 0.87
EXOSC3-202ENST00000396521 EMID1Q96A84 441 aaPredicted RBP20.49■□□□□ 0.87
EXOSC3-202ENST00000396521 FAM227BQ96M60 508 aa20.49■□□□□ 0.87
EXOSC3-202ENST00000396521 KATNAL1Q9BW62 490 aa20.49■□□□□ 0.87
EXOSC3-202ENST00000396521 CCDC171Q6TFL3 1326 aa20.49■□□□□ 0.87
EXOSC3-202ENST00000396521 PRRC2BQ5JSZ5 2229 aaKnown RBP20.48■□□□□ 0.87
EXOSC3-202ENST00000396521 A0A0D9SFI3 127 aa20.48■□□□□ 0.87
EXOSC3-202ENST00000396521 ABHD14A-ACY1A0A1B0GW23 586 aa20.48■□□□□ 0.87
EXOSC3-202ENST00000396521 AFG1LQ8WV93 481 aa20.48■□□□□ 0.87
EXOSC3-202ENST00000396521 ANKS1AQ92625 1134 aa20.48■□□□□ 0.87
EXOSC3-202ENST00000396521 COPS5Q92905 334 aa20.48■□□□□ 0.87
EXOSC3-202ENST00000396521 MRPL11Q9Y3B7 192 aaKnown RBP20.48■□□□□ 0.87
EXOSC3-202ENST00000396521 ZNF213O14771 459 aa20.47■□□□□ 0.87
EXOSC3-202ENST00000396521 EIF3JO75822 258 aaKnown RBP20.47■□□□□ 0.87
EXOSC3-202ENST00000396521 MMP3P08254 477 aa20.47■□□□□ 0.87
EXOSC3-202ENST00000396521 PLA2G5P39877 138 aa20.47■□□□□ 0.87
EXOSC3-202ENST00000396521 HDAC1Q13547 482 aaPredicted RBP20.47■□□□□ 0.87
EXOSC3-202ENST00000396521 USH1GQ495M9 461 aa20.47■□□□□ 0.87
EXOSC3-202ENST00000396521 ASPRV1Q53RT3 343 aa20.47■□□□□ 0.87
EXOSC3-202ENST00000396521 CNKSR3Q6P9H4 555 aa20.47■□□□□ 0.87
EXOSC3-202ENST00000396521 LRRC8DQ7L1W4 858 aa20.47■□□□□ 0.87
EXOSC3-202ENST00000396521 SYTL5Q8TDW5 730 aaPredicted RBP20.47■□□□□ 0.87
EXOSC3-202ENST00000396521 RMDN3Q96TC7 470 aa20.47■□□□□ 0.87
EXOSC3-202ENST00000396521 ZBED2Q9BTP6 218 aa20.47■□□□□ 0.87
EXOSC3-202ENST00000396521 RFXAPO00287 272 aa20.46■□□□□ 0.87
EXOSC3-202ENST00000396521 ARIH2O95376 493 aa20.46■□□□□ 0.87
EXOSC3-202ENST00000396521 CXCL10P02778 98 aa20.46■□□□□ 0.87
EXOSC3-202ENST00000396521 KCNQ1P51787 676 aa20.46■□□□□ 0.87
EXOSC3-202ENST00000396521 HAND2P61296 217 aa20.46■□□□□ 0.87
EXOSC3-202ENST00000396521 ARHGAP1Q07960 439 aa20.46■□□□□ 0.87
EXOSC3-202ENST00000396521 LAMC2Q13753 1193 aa20.46■□□□□ 0.87
EXOSC3-202ENST00000396521 SEPT14Q6ZU15 432 aa20.46■□□□□ 0.87
EXOSC3-202ENST00000396521 C7orf31Q8N865 590 aa20.46■□□□□ 0.87
EXOSC3-202ENST00000396521 PNMA1Q8ND90 353 aa20.46■□□□□ 0.87
EXOSC3-202ENST00000396521 FAM122AQ96E09 287 aa20.46■□□□□ 0.87
EXOSC3-202ENST00000396521 RAD9AQ99638 391 aa20.46■□□□□ 0.87
EXOSC3-202ENST00000396521 KAT14Q9H8E8 782 aa20.46■□□□□ 0.87
EXOSC3-202ENST00000396521 CERS4Q9HA82 394 aa20.46■□□□□ 0.87
EXOSC3-202ENST00000396521 MAP3K20Q9NYL2 800 aaKnown RBP20.46■□□□□ 0.87
EXOSC3-202ENST00000396521 GTF2IRD1Q9UHL9 959 aa20.46■□□□□ 0.87
EXOSC3-202ENST00000396521 LCTP09848 1927 aa20.45■□□□□ 0.86
EXOSC3-202ENST00000396521 CHMP4BP1P59074 171 aa20.45■□□□□ 0.86
EXOSC3-202ENST00000396521 WDR5P61964 334 aaKnown RBP20.45■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms