RNA–Protein interactions for RNA: ENST00000395454.6

SCAF11-204, Transcript of SR-related CTD associated factor 11, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SCAF11, Length 1,931 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-204ENST00000395454 PLS1Q14651 629 aa17.15■□□□□ 0.34
SCAF11-204ENST00000395454 LONRF3Q496Y0 759 aa17.15■□□□□ 0.34
SCAF11-204ENST00000395454 HEATR3Q7Z4Q2 680 aa17.15■□□□□ 0.34
SCAF11-204ENST00000395454 CSRNP2Q9H175 543 aa17.15■□□□□ 0.34
SCAF11-204ENST00000395454 PNMA6FA0A0J9YX94 578 aa17.14■□□□□ 0.33
SCAF11-204ENST00000395454 ALDH1A1P00352 501 aa17.14■□□□□ 0.33
SCAF11-204ENST00000395454 TMEM132BQ14DG7 1078 aa17.14■□□□□ 0.33
SCAF11-204ENST00000395454 USH1GQ495M9 461 aa17.14■□□□□ 0.33
SCAF11-204ENST00000395454 NT5DC1Q5TFE4 455 aa17.14■□□□□ 0.33
SCAF11-204ENST00000395454 PPP1R18Q6NYC8 613 aa17.14■□□□□ 0.33
SCAF11-204ENST00000395454 POTEEQ6S8J3 1075 aa17.14■□□□□ 0.33
SCAF11-204ENST00000395454 SARM1Q6SZW1 724 aa17.14■□□□□ 0.33
SCAF11-204ENST00000395454 LBX2Q6XYB7 198 aa17.14■□□□□ 0.33
SCAF11-204ENST00000395454 ZSCAN30Q86W11 494 aa17.14■□□□□ 0.33
SCAF11-204ENST00000395454 CEP57L1Q8IYX8 460 aa17.14■□□□□ 0.33
SCAF11-204ENST00000395454 ANKRD13CQ8N6S4 541 aa17.14■□□□□ 0.33
SCAF11-204ENST00000395454 MB21D1Q8N884 522 aa17.14■□□□□ 0.33
SCAF11-204ENST00000395454 C4orf32Q8N8J7 132 aa17.14■□□□□ 0.33
SCAF11-204ENST00000395454 RAVER2Q9HCJ3 691 aaKnown RBP17.14■□□□□ 0.33
SCAF11-204ENST00000395454 CCDC39Q9UFE4 941 aa17.14■□□□□ 0.33
SCAF11-204ENST00000395454 NLRP12P59046 1061 aa17.13■□□□□ 0.33
SCAF11-204ENST00000395454 PTGDRQ13258 359 aa17.13■□□□□ 0.33
SCAF11-204ENST00000395454 CRHR2Q13324 411 aa17.13■□□□□ 0.33
SCAF11-204ENST00000395454 NAT10Q9H0A0 1025 aaKnown RBP17.13■□□□□ 0.33
SCAF11-204ENST00000395454 ZFYVE28Q9HCC9 887 aa17.13■□□□□ 0.33
SCAF11-204ENST00000395454 TXNRD2Q9NNW7 524 aa17.13■□□□□ 0.33
SCAF11-204ENST00000395454 CENPFP49454 3210 aa17.13■□□□□ 0.33
SCAF11-204ENST00000395454 SMCHD1A6NHR9 2005 aa17.13■□□□□ 0.33
SCAF11-204ENST00000395454 ACTN4O43707 911 aaKnown RBP17.13■□□□□ 0.33
SCAF11-204ENST00000395454 GNA11P29992 359 aa17.13■□□□□ 0.33
SCAF11-204ENST00000395454 ORC2Q13416 577 aaPredicted RBP17.13■□□□□ 0.33
SCAF11-204ENST00000395454 DHX40Q8IX18 779 aaKnown RBP17.13■□□□□ 0.33
SCAF11-204ENST00000395454 REPS2Q8NFH8 660 aa17.13■□□□□ 0.33
SCAF11-204ENST00000395454 GTF3C2Q8WUA4 911 aaPredicted RBP17.13■□□□□ 0.33
SCAF11-204ENST00000395454 AGBL1Q96MI9 1066 aa17.13■□□□□ 0.33
SCAF11-204ENST00000395454 BTBD7Q9P203 1132 aa17.13■□□□□ 0.33
SCAF11-204ENST00000395454 RBPJLQ9UBG7 517 aa17.13■□□□□ 0.33
SCAF11-204ENST00000395454 ZNF214Q9UL59 606 aaPredicted RBP17.13■□□□□ 0.33
SCAF11-204ENST00000395454 CCPG1Q9ULG6 757 aa17.13■□□□□ 0.33
SCAF11-204ENST00000395454 ZNF536O15090 1300 aa17.13■□□□□ 0.33
SCAF11-204ENST00000395454 THSD7BQ9C0I4 1608 aa17.12■□□□□ 0.33
SCAF11-204ENST00000395454 CA12O43570 354 aa17.12■□□□□ 0.33
SCAF11-204ENST00000395454 PPP1R11O60927 126 aaPredicted RBP17.12■□□□□ 0.33
SCAF11-204ENST00000395454 ICAM1P05362 532 aa17.12■□□□□ 0.33
SCAF11-204ENST00000395454 TAL1P17542 331 aaPredicted RBP17.12■□□□□ 0.33
SCAF11-204ENST00000395454 ATP2B1P20020 1258 aa17.12■□□□□ 0.33
SCAF11-204ENST00000395454 GCLCP48506 637 aaPredicted RBP17.12■□□□□ 0.33
SCAF11-204ENST00000395454 ZNF174Q15697 407 aa17.12■□□□□ 0.33
SCAF11-204ENST00000395454 DPCR1Q3MIW9 517 aa17.12■□□□□ 0.33
SCAF11-204ENST00000395454 SNRNP48Q6IEG0 339 aaKnown RBP17.12■□□□□ 0.33
SCAF11-204ENST00000395454 KANK3Q6NY19 840 aa17.12■□□□□ 0.33
SCAF11-204ENST00000395454 KRT25Q7Z3Z0 450 aa17.12■□□□□ 0.33
SCAF11-204ENST00000395454 FBXO11Q86XK2 927 aa17.12■□□□□ 0.33
SCAF11-204ENST00000395454 AMNQ9BXJ7 453 aa17.12■□□□□ 0.33
SCAF11-204ENST00000395454 C6orf50Q9HD87 102 aa17.12■□□□□ 0.33
SCAF11-204ENST00000395454 RRAGDQ9NQL2 400 aaPredicted RBP17.12■□□□□ 0.33
SCAF11-204ENST00000395454 RABGAP1Q9Y3P9 1069 aa17.12■□□□□ 0.33
SCAF11-204ENST00000395454 A0A0G2JMZ2 1700 aa17.12■□□□□ 0.33
SCAF11-204ENST00000395454 CCDC194A0A1B0GVG4 234 aa17.11■□□□□ 0.33
SCAF11-204ENST00000395454 LAD1O00515 517 aa17.11■□□□□ 0.33
SCAF11-204ENST00000395454 TLR2O60603 784 aa17.11■□□□□ 0.33
SCAF11-204ENST00000395454 TRPA1O75762 1119 aa17.11■□□□□ 0.33
SCAF11-204ENST00000395454 NAPAP54920 295 aa17.11■□□□□ 0.33
SCAF11-204ENST00000395454 PLA2G4DQ86XP0 818 aa17.11■□□□□ 0.33
SCAF11-204ENST00000395454 CNNM3Q8NE01 707 aa17.11■□□□□ 0.33
SCAF11-204ENST00000395454 SPATA20Q8TB22 786 aa17.11■□□□□ 0.33
SCAF11-204ENST00000395454 ERCC4Q92889 916 aaPredicted RBP17.11■□□□□ 0.33
SCAF11-204ENST00000395454 COA7Q96BR5 231 aa17.11■□□□□ 0.33
SCAF11-204ENST00000395454 TEX13BQ9BXU2 312 aa17.11■□□□□ 0.33
SCAF11-204ENST00000395454 CPA4Q9UI42 421 aa17.11■□□□□ 0.33
SCAF11-204ENST00000395454 HOOK1Q9UJC3 728 aaKnown RBP17.11■□□□□ 0.33
SCAF11-204ENST00000395454 PCDHA1Q9Y5I3 950 aa17.11■□□□□ 0.33
SCAF11-204ENST00000395454 STAT3P40763 770 aa17.11■□□□□ 0.33
SCAF11-204ENST00000395454 OAZ1P54368 228 aa17.11■□□□□ 0.33
SCAF11-204ENST00000395454 ERVK-9P63128 1117 aa17.11■□□□□ 0.33
SCAF11-204ENST00000395454 ERVK-24P63145 666 aa17.11■□□□□ 0.33
SCAF11-204ENST00000395454 SPECC1Q5M775 1068 aa17.11■□□□□ 0.33
SCAF11-204ENST00000395454 USP49Q70CQ1 688 aa17.11■□□□□ 0.33
SCAF11-204ENST00000395454 SPATC1LQ9H0A9 340 aa17.11■□□□□ 0.33
SCAF11-204ENST00000395454 HOMER2Q9NSB8 354 aa17.11■□□□□ 0.33
SCAF11-204ENST00000395454 POLR2DO15514 142 aaKnown RBP17.1■□□□□ 0.33
SCAF11-204ENST00000395454 CNMDO75829 334 aa17.1■□□□□ 0.33
SCAF11-204ENST00000395454 ALAS1P13196 640 aa17.1■□□□□ 0.33
SCAF11-204ENST00000395454 PRPHP41219 470 aa17.1■□□□□ 0.33
SCAF11-204ENST00000395454 SARSP49591 514 aaKnown RBP17.1■□□□□ 0.33
SCAF11-204ENST00000395454 Q3C1V9 767 aa17.1■□□□□ 0.33
SCAF11-204ENST00000395454 ARHGAP30Q7Z6I6 1101 aaPredicted RBP17.1■□□□□ 0.33
SCAF11-204ENST00000395454 SH3RF1Q7Z6J0 888 aa17.1■□□□□ 0.33
SCAF11-204ENST00000395454 DNAJC5GQ8N7S2 189 aa17.1■□□□□ 0.33
SCAF11-204ENST00000395454 GPRC5AQ8NFJ5 357 aa17.1■□□□□ 0.33
SCAF11-204ENST00000395454 RASGRP4Q8TDF6 673 aa17.1■□□□□ 0.33
SCAF11-204ENST00000395454 RNF186Q9NXI6 227 aa17.1■□□□□ 0.33
SCAF11-204ENST00000395454 RIPK3Q9Y572 518 aa17.1■□□□□ 0.33
SCAF11-204ENST00000395454 SMCO2A6NFE2 343 aa17.09■□□□□ 0.33
SCAF11-204ENST00000395454 ATP2A1O14983 1001 aa17.09■□□□□ 0.33
SCAF11-204ENST00000395454 TBC1D8O95759 1140 aa17.09■□□□□ 0.33
SCAF11-204ENST00000395454 CLCN1P35523 988 aa17.09■□□□□ 0.33
SCAF11-204ENST00000395454 LONP1P36776 959 aaKnown RBP17.09■□□□□ 0.33
SCAF11-204ENST00000395454 IL17AQ16552 155 aa17.09■□□□□ 0.33
SCAF11-204ENST00000395454 FAM110CQ1W6H9 321 aa17.09■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms