RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 SWAP70Q9UH65 585 aa10.77□□□□□ -0.69
COL6A3-204ENST00000392003 LUC7L2Q9Y383 392 aaKnown RBP10.77□□□□□ -0.69
COL6A3-204ENST00000392003 SBF2Q86WG5 1849 aa10.76□□□□□ -0.69
COL6A3-204ENST00000392003 TRIM49BA6NDI0 452 aa10.76□□□□□ -0.69
COL6A3-204ENST00000392003 TADA3O75528 432 aa10.76□□□□□ -0.69
COL6A3-204ENST00000392003 PDHBP11177 359 aa10.76□□□□□ -0.69
COL6A3-204ENST00000392003 MTIF2P46199 727 aaKnown RBP10.76□□□□□ -0.69
COL6A3-204ENST00000392003 MAP3K9P80192 1104 aa10.76□□□□□ -0.69
COL6A3-204ENST00000392003 TUBB2AQ13885 445 aa10.76□□□□□ -0.69
COL6A3-204ENST00000392003 SLC15A2Q16348 729 aa10.76□□□□□ -0.69
COL6A3-204ENST00000392003 ZNF569Q5MCW4 686 aa10.76□□□□□ -0.69
COL6A3-204ENST00000392003 CNNM4Q6P4Q7 775 aa10.76□□□□□ -0.69
COL6A3-204ENST00000392003 RASGRP2Q7LDG7 609 aa10.76□□□□□ -0.69
COL6A3-204ENST00000392003 PODNQ7Z5L7 613 aa10.76□□□□□ -0.69
COL6A3-204ENST00000392003 GIMAP8Q8ND71 665 aaPredicted RBP10.76□□□□□ -0.69
COL6A3-204ENST00000392003 TUBB2BQ9BVA1 445 aa10.76□□□□□ -0.69
COL6A3-204ENST00000392003 RIOX1Q9H6W3 641 aa10.76□□□□□ -0.69
COL6A3-204ENST00000392003 ABHD10Q9NUJ1 306 aa10.76□□□□□ -0.69
COL6A3-204ENST00000392003 LRWD1Q9UFC0 647 aa10.76□□□□□ -0.69
COL6A3-204ENST00000392003 SERPINB13Q9UIV8 391 aa10.76□□□□□ -0.69
COL6A3-204ENST00000392003 IPO7O95373 1038 aaKnown RBP10.76□□□□□ -0.69
COL6A3-204ENST00000392003 TTLL1O95922 423 aa10.76□□□□□ -0.69
COL6A3-204ENST00000392003 CCNE1P24864 410 aa10.76□□□□□ -0.69
COL6A3-204ENST00000392003 DNM2P50570 870 aa10.76□□□□□ -0.69
COL6A3-204ENST00000392003 TTC19Q6DKK2 380 aaPredicted RBP10.76□□□□□ -0.69
COL6A3-204ENST00000392003 RPS6KL1Q9Y6S9 549 aa10.76□□□□□ -0.69
COL6A3-204ENST00000392003 LGALS16A8MUM7 142 aa10.75□□□□□ -0.69
COL6A3-204ENST00000392003 MB21D1Q8N884 522 aa10.75□□□□□ -0.69
COL6A3-204ENST00000392003 LRRN4CLQ8ND94 238 aa10.75□□□□□ -0.69
COL6A3-204ENST00000392003 OR8K1Q8NGG5 319 aa10.75□□□□□ -0.69
COL6A3-204ENST00000392003 GOLGA1Q92805 767 aa10.75□□□□□ -0.69
COL6A3-204ENST00000392003 P2RX5Q93086 422 aa10.75□□□□□ -0.69
COL6A3-204ENST00000392003 LRRC27Q9C0I9 530 aa10.75□□□□□ -0.69
COL6A3-204ENST00000392003 JRKLQ9Y4A0 524 aa10.75□□□□□ -0.69
COL6A3-204ENST00000392003 MRFAP1Q9Y605 127 aa10.75□□□□□ -0.69
COL6A3-204ENST00000392003 CTAGE9A4FU28 777 aa10.75□□□□□ -0.69
COL6A3-204ENST00000392003 PPIP5K2O43314 1243 aa10.75□□□□□ -0.69
COL6A3-204ENST00000392003 BAG6P46379 1132 aa10.75□□□□□ -0.69
COL6A3-204ENST00000392003 TNNI2P48788 182 aa10.75□□□□□ -0.69
COL6A3-204ENST00000392003 COA7Q96BR5 231 aa10.75□□□□□ -0.69
COL6A3-204ENST00000392003 C7orf25Q9BPX7 421 aa10.75□□□□□ -0.69
COL6A3-204ENST00000392003 TRIM9Q9C026 710 aa10.75□□□□□ -0.69
COL6A3-204ENST00000392003 A0A1W2PQC6 194 aa10.75□□□□□ -0.69
COL6A3-204ENST00000392003 KLRC4O43908 158 aa10.75□□□□□ -0.69
COL6A3-204ENST00000392003 FGFR1OPO95684 399 aaKnown RBP10.75□□□□□ -0.69
COL6A3-204ENST00000392003 AKR1B1P15121 316 aa10.75□□□□□ -0.69
COL6A3-204ENST00000392003 H2AFXP16104 143 aaPredicted RBP10.75□□□□□ -0.69
COL6A3-204ENST00000392003 MRPL12P52815 198 aaKnown RBP10.75□□□□□ -0.69
COL6A3-204ENST00000392003 SETQ01105 290 aaPredicted RBP10.75□□□□□ -0.69
COL6A3-204ENST00000392003 FKBP15Q5T1M5 1219 aa10.75□□□□□ -0.69
COL6A3-204ENST00000392003 KRT79Q5XKE5 535 aa10.75□□□□□ -0.69
COL6A3-204ENST00000392003 GPR161Q8N6U8 529 aaKnown RBP10.75□□□□□ -0.69
COL6A3-204ENST00000392003 TMEM260Q9NX78 707 aa10.75□□□□□ -0.69
COL6A3-204ENST00000392003 STK17AQ9UEE5 414 aa10.75□□□□□ -0.69
COL6A3-204ENST00000392003 MYH1P12882 1939 aa10.74□□□□□ -0.69
COL6A3-204ENST00000392003 CACNB3P54284 484 aa10.74□□□□□ -0.69
COL6A3-204ENST00000392003 TBC1D8BQ0IIM8 1120 aa10.74□□□□□ -0.69
COL6A3-204ENST00000392003 CEP112Q8N8E3 955 aa10.74□□□□□ -0.69
COL6A3-204ENST00000392003 TUBGCP2Q9BSJ2 902 aa10.74□□□□□ -0.69
COL6A3-204ENST00000392003 NUP58Q9BVL2 599 aa10.74□□□□□ -0.69
COL6A3-204ENST00000392003 PNMA6FA0A0J9YX94 578 aa10.74□□□□□ -0.69
COL6A3-204ENST00000392003 C21orf2O43822 256 aa10.74□□□□□ -0.69
COL6A3-204ENST00000392003 TRIM21P19474 475 aaKnown RBP10.74□□□□□ -0.69
COL6A3-204ENST00000392003 CRKP46108 304 aa10.74□□□□□ -0.69
COL6A3-204ENST00000392003 CLCN6P51797 869 aa10.74□□□□□ -0.69
COL6A3-204ENST00000392003 IKQ13123 557 aaPredicted RBP10.74□□□□□ -0.69
COL6A3-204ENST00000392003 GPATCH4Q5T3I0 446 aaKnown RBP10.74□□□□□ -0.69
COL6A3-204ENST00000392003 PPP1R18Q6NYC8 613 aa10.74□□□□□ -0.69
COL6A3-204ENST00000392003 POTEDQ86YR6 584 aa10.74□□□□□ -0.69
COL6A3-204ENST00000392003 ACRBPQ8NEB7 543 aa10.74□□□□□ -0.69
COL6A3-204ENST00000392003 SLF1Q9BQI6 1058 aa10.74□□□□□ -0.69
COL6A3-204ENST00000392003 TMOD2Q9NZR1 351 aa10.74□□□□□ -0.69
COL6A3-204ENST00000392003 MYO1CO00159 1063 aa10.74□□□□□ -0.69
COL6A3-204ENST00000392003 ECE2O60344 883 aa10.74□□□□□ -0.69
COL6A3-204ENST00000392003 AOC3Q16853 763 aa10.74□□□□□ -0.69
COL6A3-204ENST00000392003 STYK1Q6J9G0 422 aa10.74□□□□□ -0.69
COL6A3-204ENST00000392003 CERS5Q8N5B7 392 aa10.74□□□□□ -0.69
COL6A3-204ENST00000392003 NEK11Q8NG66 645 aa10.74□□□□□ -0.69
COL6A3-204ENST00000392003 KIFC2Q96AC6 838 aa10.74□□□□□ -0.69
COL6A3-204ENST00000392003 EPN1Q9Y6I3 576 aaPredicted RBP10.74□□□□□ -0.69
COL6A3-204ENST00000392003 PLIN4Q96Q06 1357 aa10.73□□□□□ -0.69
COL6A3-204ENST00000392003 EP400Q96L91 3159 aa10.73□□□□□ -0.69
COL6A3-204ENST00000392003 IDEP14735 1019 aa10.73□□□□□ -0.69
COL6A3-204ENST00000392003 FECHP22830 423 aa10.73□□□□□ -0.69
COL6A3-204ENST00000392003 TUBB4BP68371 445 aa10.73□□□□□ -0.69
COL6A3-204ENST00000392003 TTI2Q6NXR4 508 aa10.73□□□□□ -0.69
COL6A3-204ENST00000392003 SUPT20HQ8NEM7 779 aa10.73□□□□□ -0.69
COL6A3-204ENST00000392003 RABGGTAQ92696 567 aa10.73□□□□□ -0.69
COL6A3-204ENST00000392003 CUL5Q93034 780 aa10.73□□□□□ -0.69
COL6A3-204ENST00000392003 CCDC17Q96LX7 622 aa10.73□□□□□ -0.69
COL6A3-204ENST00000392003 NAPGQ99747 312 aaPredicted RBP10.73□□□□□ -0.69
COL6A3-204ENST00000392003 IRX2Q9BZI1 471 aaPredicted RBP10.73□□□□□ -0.69
COL6A3-204ENST00000392003 MYO1AQ9UBC5 1043 aa10.73□□□□□ -0.69
COL6A3-204ENST00000392003 CYLC1P35663 651 aaPredicted RBP10.73□□□□□ -0.69
COL6A3-204ENST00000392003 NOVP48745 357 aa10.73□□□□□ -0.69
COL6A3-204ENST00000392003 GABPAQ06546 454 aa10.73□□□□□ -0.69
COL6A3-204ENST00000392003 ZNF543Q08ER8 600 aa10.73□□□□□ -0.69
COL6A3-204ENST00000392003 CDC42EP5Q6NZY7 148 aa10.73□□□□□ -0.69
COL6A3-204ENST00000392003 IRF2BP1Q8IU81 584 aa10.73□□□□□ -0.69
COL6A3-204ENST00000392003 SNX29Q8TEQ0 813 aa10.73□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms