RNA–Protein interactions for RNA: ENST00000389589.8

SHOX2-201, Transcript of short stature homeobox 2, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SHOX2, Length 2,072 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-201ENST00000389589 SLFN12Q8IYM2 578 aa28.31■■■□□ 2.12
SHOX2-201ENST00000389589 FEZ1Q99689 392 aa28.31■■■□□ 2.12
SHOX2-201ENST00000389589 OPLAHO14841 1288 aa28.31■■■□□ 2.12
SHOX2-201ENST00000389589 CTNND1O60716 968 aaKnown RBP28.31■■■□□ 2.12
SHOX2-201ENST00000389589 KMT5BQ4FZB7 885 aa28.31■■■□□ 2.12
SHOX2-201ENST00000389589 KIFC2Q96AC6 838 aa28.31■■■□□ 2.12
SHOX2-201ENST00000389589 KCNMB3Q9NPA1 279 aa28.31■■■□□ 2.12
SHOX2-201ENST00000389589 SAMSN1Q9NSI8 373 aaKnown RBP28.31■■■□□ 2.12
SHOX2-201ENST00000389589 CTNND2Q9UQB3 1225 aa28.31■■■□□ 2.12
SHOX2-201ENST00000389589 POTEMA6NI47 508 aa28.3■■■□□ 2.12
SHOX2-201ENST00000389589 H7C1D1 291 aa28.3■■■□□ 2.12
SHOX2-201ENST00000389589 PAK1Q13153 545 aa28.3■■■□□ 2.12
SHOX2-201ENST00000389589 SV2BQ7L1I2 683 aa28.3■■■□□ 2.12
SHOX2-201ENST00000389589 SNX29Q8TEQ0 813 aa28.3■■■□□ 2.12
SHOX2-201ENST00000389589 ZNF341Q9BYN7 854 aa28.3■■■□□ 2.12
SHOX2-201ENST00000389589 TRIM9Q9C026 710 aa28.3■■■□□ 2.12
SHOX2-201ENST00000389589 DEFB129Q9H1M3 183 aa28.3■■■□□ 2.12
SHOX2-201ENST00000389589 ZNF541Q9H0D2 1346 aa28.3■■■□□ 2.12
SHOX2-201ENST00000389589 TBX3O15119 743 aa28.3■■■□□ 2.12
SHOX2-201ENST00000389589 STX17P56962 302 aa28.3■■■□□ 2.12
SHOX2-201ENST00000389589 Q4G0T1 1027 aa28.3■■■□□ 2.12
SHOX2-201ENST00000389589 VSTM4Q8IW00 320 aa28.3■■■□□ 2.12
SHOX2-201ENST00000389589 NAP1L5Q96NT1 182 aaPredicted RBP28.3■■■□□ 2.12
SHOX2-201ENST00000389589 PNMA5Q96PV4 448 aa28.3■■■□□ 2.12
SHOX2-201ENST00000389589 GLIS2Q9BZE0 524 aaPredicted RBP28.3■■■□□ 2.12
SHOX2-201ENST00000389589 SCAF8Q9UPN6 1271 aaKnown RBP28.3■■■□□ 2.12
SHOX2-201ENST00000389589 STIM1Q13586 685 aa28.29■■■□□ 2.12
SHOX2-201ENST00000389589 CDKAL1Q5VV42 579 aa28.29■■■□□ 2.12
SHOX2-201ENST00000389589 LPAR1Q92633 364 aa28.29■■■□□ 2.12
SHOX2-201ENST00000389589 HOOK2Q96ED9 719 aa28.29■■■□□ 2.12
SHOX2-201ENST00000389589 LRRC27Q9C0I9 530 aa28.29■■■□□ 2.12
SHOX2-201ENST00000389589 MRPL11Q9Y3B7 192 aaKnown RBP28.29■■■□□ 2.12
SHOX2-201ENST00000389589 DOCK1Q14185 1865 aa28.29■■■□□ 2.12
SHOX2-201ENST00000389589 TPD52L1Q16890 204 aaPredicted RBP28.28■■■□□ 2.12
SHOX2-201ENST00000389589 DCAF15Q66K64 600 aa28.28■■■□□ 2.12
SHOX2-201ENST00000389589 P2RX7Q99572 595 aaKnown RBP28.28■■■□□ 2.12
SHOX2-201ENST00000389589 TMEM119Q4V9L6 283 aa28.28■■■□□ 2.12
SHOX2-201ENST00000389589 GIMAP8Q8ND71 665 aaPredicted RBP28.28■■■□□ 2.12
SHOX2-201ENST00000389589 BLOC1S4Q9NUP1 217 aa28.28■■■□□ 2.12
SHOX2-201ENST00000389589 KDM3AQ9Y4C1 1321 aa28.27■■■□□ 2.12
SHOX2-201ENST00000389589 WDR46O15213 610 aaKnown RBP28.27■■■□□ 2.12
SHOX2-201ENST00000389589 CYP3A4P08684 503 aa28.27■■■□□ 2.12
SHOX2-201ENST00000389589 CIITAP33076 1130 aa28.27■■■□□ 2.12
SHOX2-201ENST00000389589 CCDC174Q6PII3 467 aa28.27■■■□□ 2.12
SHOX2-201ENST00000389589 APOBEC3FQ8IUX4 373 aaKnown RBP28.27■■■□□ 2.12
SHOX2-201ENST00000389589 ADSSL1Q8N142 457 aa28.27■■■□□ 2.12
SHOX2-201ENST00000389589 NELFBQ8WX92 580 aa28.27■■■□□ 2.12
SHOX2-201ENST00000389589 LARP4BQ92615 738 aaKnown RBP28.27■■■□□ 2.12
SHOX2-201ENST00000389589 CTAGE1Q96RT6 745 aa28.27■■■□□ 2.12
SHOX2-201ENST00000389589 KIAA1683Q9H0B3 1180 aa28.27■■■□□ 2.12
SHOX2-201ENST00000389589 GDAQ9Y2T3 454 aa28.27■■■□□ 2.12
SHOX2-201ENST00000389589 ASTN2O75129 1339 aaPredicted RBP28.27■■■□□ 2.12
SHOX2-201ENST00000389589 ABCB11O95342 1321 aa28.27■■■□□ 2.12
SHOX2-201ENST00000389589 PRCPP42785 496 aa28.27■■■□□ 2.12
SHOX2-201ENST00000389589 ARID5BQ14865 1188 aa28.27■■■□□ 2.12
SHOX2-201ENST00000389589 HSP90AA4PQ58FG1 418 aa28.27■■■□□ 2.12
SHOX2-201ENST00000389589 NT5C3AQ9H0P0 336 aa28.27■■■□□ 2.12
SHOX2-201ENST00000389589 PPP1R2P41236 205 aa28.26■■■□□ 2.11
SHOX2-201ENST00000389589 ASIC1P78348 528 aa28.26■■■□□ 2.11
SHOX2-201ENST00000389589 HYIQ5T013 277 aa28.26■■■□□ 2.11
SHOX2-201ENST00000389589 C17orf53Q8N3J3 647 aaPredicted RBP28.26■■■□□ 2.11
SHOX2-201ENST00000389589 RAD54LQ92698 747 aa28.26■■■□□ 2.11
SHOX2-201ENST00000389589 EXOC1Q9NV70 894 aa28.26■■■□□ 2.11
SHOX2-201ENST00000389589 SFPQP23246 707 aaKnown RBP eCLIP28.25■■■□□ 2.11
SHOX2-201ENST00000389589 CCDC84Q86UT8 332 aaPredicted RBP28.25■■■□□ 2.11
SHOX2-201ENST00000389589 GCOM1H8Y6P7 765 aaPredicted RBP28.25■■■□□ 2.11
SHOX2-201ENST00000389589 NRDCO43847 1150 aa28.25■■■□□ 2.11
SHOX2-201ENST00000389589 POLR2MP0CAP2 368 aa28.25■■■□□ 2.11
SHOX2-201ENST00000389589 SKILP12757 684 aa28.25■■■□□ 2.11
SHOX2-201ENST00000389589 HOXA13P31271 388 aaPredicted RBP28.25■■■□□ 2.11
SHOX2-201ENST00000389589 INTS13Q9NVM9 706 aa28.25■■■□□ 2.11
SHOX2-201ENST00000389589 SBF1O95248 1867 aa28.24■■■□□ 2.11
SHOX2-201ENST00000389589 A0A1B0GTH6 734 aa28.24■■■□□ 2.11
SHOX2-201ENST00000389589 HOXA7P31268 230 aaPredicted RBP28.24■■■□□ 2.11
SHOX2-201ENST00000389589 CCZ1BP86790 482 aa28.24■■■□□ 2.11
SHOX2-201ENST00000389589 CCZ1P86791 482 aaPredicted RBP28.24■■■□□ 2.11
SHOX2-201ENST00000389589 SPAG1Q07617 926 aa28.24■■■□□ 2.11
SHOX2-201ENST00000389589 PRR16Q569H4 304 aa28.24■■■□□ 2.11
SHOX2-201ENST00000389589 CNNM4Q6P4Q7 775 aa28.24■■■□□ 2.11
SHOX2-201ENST00000389589 ETNPPLQ8TBG4 499 aa28.24■■■□□ 2.11
SHOX2-201ENST00000389589 FAM20AQ96MK3 541 aa28.24■■■□□ 2.11
SHOX2-201ENST00000389589 EHMT1Q9H9B1 1298 aa28.24■■■□□ 2.11
SHOX2-201ENST00000389589 STK24Q9Y6E0 443 aa28.24■■■□□ 2.11
SHOX2-201ENST00000389589 PSMA7O14818 248 aa28.23■■■□□ 2.11
SHOX2-201ENST00000389589 TAL1P17542 331 aaPredicted RBP28.23■■■□□ 2.11
SHOX2-201ENST00000389589 NBPF12Q5TAG4 269 aaPredicted RBP28.23■■■□□ 2.11
SHOX2-201ENST00000389589 NUDT12Q9BQG2 462 aa28.23■■■□□ 2.11
SHOX2-201ENST00000389589 PVALEFA0A1B0GWK0 134 aa28.23■■■□□ 2.11
SHOX2-201ENST00000389589 CFBP00751 764 aa28.23■■■□□ 2.11
SHOX2-201ENST00000389589 LMNB1P20700 586 aa28.23■■■□□ 2.11
SHOX2-201ENST00000389589 PDE4DQ08499 809 aa28.23■■■□□ 2.11
SHOX2-201ENST00000389589 MCM6Q14566 821 aa28.23■■■□□ 2.11
SHOX2-201ENST00000389589 NR1I3Q14994 352 aa28.23■■■□□ 2.11
SHOX2-201ENST00000389589 ARMCX5Q6P1M9 558 aa28.23■■■□□ 2.11
SHOX2-201ENST00000389589 GPC2Q8N158 579 aa28.23■■■□□ 2.11
SHOX2-201ENST00000389589 PRPF38AQ8NAV1 312 aaKnown RBP28.23■■■□□ 2.11
SHOX2-201ENST00000389589 DHTKD1Q96HY7 919 aaPredicted RBP28.23■■■□□ 2.11
SHOX2-201ENST00000389589 FBXO28Q9NVF7 368 aa28.23■■■□□ 2.11
SHOX2-201ENST00000389589 GPRC5DQ9NZD1 345 aa28.23■■■□□ 2.11
SHOX2-201ENST00000389589 CCT6AP40227 531 aaKnown RBP28.22■■■□□ 2.11
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms