RNA–Protein interactions for RNA: ENST00000381835.9

CIITA-202, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 1 (best) BASIC

Gene CIITA, Length 2,344 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-202ENST00000381835 ITGBL1O95965 494 aaPredicted RBP14.06□□□□□ -0.16
CIITA-202ENST00000381835 BMP15O95972 392 aa14.06□□□□□ -0.16
CIITA-202ENST00000381835 GRIN1Q05586 938 aa14.06□□□□□ -0.16
CIITA-202ENST00000381835 GOLPH3LQ9H4A5 285 aa14.06□□□□□ -0.16
CIITA-202ENST00000381835 HOXC10Q9NYD6 342 aa14.06□□□□□ -0.16
CIITA-202ENST00000381835 LOC285556D6RIA3 1793 aa14.05□□□□□ -0.16
CIITA-202ENST00000381835 TRPM7Q96QT4 1865 aa14.05□□□□□ -0.16
CIITA-202ENST00000381835 SPDYE3A6NKU9 549 aa14.05□□□□□ -0.16
CIITA-202ENST00000381835 CUTAO60888 179 aa14.05□□□□□ -0.16
CIITA-202ENST00000381835 FDX1P10109 184 aa14.05□□□□□ -0.16
CIITA-202ENST00000381835 MKRN3Q13064 507 aaKnown RBP14.05□□□□□ -0.16
CIITA-202ENST00000381835 SPECC1Q5M775 1068 aa14.05□□□□□ -0.16
CIITA-202ENST00000381835 CST9Q5W186 159 aa14.05□□□□□ -0.16
CIITA-202ENST00000381835 CCDC73Q6ZRK6 1079 aa14.05□□□□□ -0.16
CIITA-202ENST00000381835 FCHSD1Q86WN1 690 aa14.05□□□□□ -0.16
CIITA-202ENST00000381835 PROCA1Q8NCQ7 364 aaPredicted RBP14.05□□□□□ -0.16
CIITA-202ENST00000381835 CACTINQ8WUQ7 758 aaKnown RBP14.05□□□□□ -0.16
CIITA-202ENST00000381835 MRPS27Q92552 414 aaKnown RBP14.05□□□□□ -0.16
CIITA-202ENST00000381835 P2RX7Q99572 595 aaKnown RBP14.05□□□□□ -0.16
CIITA-202ENST00000381835 GPBP1L1Q9HC44 474 aaPredicted RBP14.05□□□□□ -0.16
CIITA-202ENST00000381835 FBXO2Q9UK22 296 aaPredicted RBP14.05□□□□□ -0.16
CIITA-202ENST00000381835 ZHX1Q9UKY1 873 aaPredicted RBP14.05□□□□□ -0.16
CIITA-202ENST00000381835 PAXBP1Q9Y5B6 917 aa14.05□□□□□ -0.16
CIITA-202ENST00000381835 A0A1W2PQ27 194 aa14.04□□□□□ -0.16
CIITA-202ENST00000381835 A0A1W2PQ64 194 aa14.04□□□□□ -0.16
CIITA-202ENST00000381835 A0A1W2PQD8 194 aa14.04□□□□□ -0.16
CIITA-202ENST00000381835 SPDYE16A6NNV3 312 aaPredicted RBP14.04□□□□□ -0.16
CIITA-202ENST00000381835 PTPREP23469 700 aa14.04□□□□□ -0.16
CIITA-202ENST00000381835 CDC25BP30305 580 aa14.04□□□□□ -0.16
CIITA-202ENST00000381835 ATP2C1P98194 919 aaPredicted RBP14.04□□□□□ -0.16
CIITA-202ENST00000381835 ANO3Q9BYT9 981 aa14.04□□□□□ -0.16
CIITA-202ENST00000381835 GTPBP4Q9BZE4 634 aaKnown RBP14.04□□□□□ -0.16
CIITA-202ENST00000381835 UNCXA6NJT0 531 aa14.04□□□□□ -0.16
CIITA-202ENST00000381835 GCOM1H8Y6P7 765 aaPredicted RBP14.04□□□□□ -0.16
CIITA-202ENST00000381835 NFIBO00712 420 aa14.04□□□□□ -0.16
CIITA-202ENST00000381835 POLR2MP0CAP2 368 aa14.04□□□□□ -0.16
CIITA-202ENST00000381835 NCBP1Q09161 790 aaKnown RBP14.04□□□□□ -0.16
CIITA-202ENST00000381835 AP3B2Q13367 1082 aa14.04□□□□□ -0.16
CIITA-202ENST00000381835 PLS1Q14651 629 aa14.04□□□□□ -0.16
CIITA-202ENST00000381835 SYCP1Q15431 976 aa14.04□□□□□ -0.16
CIITA-202ENST00000381835 CCDC144BQ3MJ40 725 aa14.04□□□□□ -0.16
CIITA-202ENST00000381835 SHC4Q6S5L8 630 aa14.04□□□□□ -0.16
CIITA-202ENST00000381835 CCDC112Q8NEF3 446 aa14.04□□□□□ -0.16
CIITA-202ENST00000381835 ADAMTS5Q9UNA0 930 aa14.04□□□□□ -0.16
CIITA-202ENST00000381835 SRPRBQ9Y5M8 271 aaKnown RBP14.04□□□□□ -0.16
CIITA-202ENST00000381835 PIK3CDO00329 1044 aa14.03□□□□□ -0.16
CIITA-202ENST00000381835 CMA1P23946 247 aa14.03□□□□□ -0.16
CIITA-202ENST00000381835 IRX3P78415 501 aaPredicted RBP14.03□□□□□ -0.16
CIITA-202ENST00000381835 SNAPC2Q13487 334 aa14.03□□□□□ -0.16
CIITA-202ENST00000381835 TMEM132BQ14DG7 1078 aa14.03□□□□□ -0.16
CIITA-202ENST00000381835 MUM1L1Q5H9M0 696 aa14.03□□□□□ -0.16
CIITA-202ENST00000381835 SNRNP48Q6IEG0 339 aaKnown RBP14.03□□□□□ -0.16
CIITA-202ENST00000381835 TMEM60Q9H2L4 133 aa14.03□□□□□ -0.16
CIITA-202ENST00000381835 RIPK3Q9Y572 518 aa14.03□□□□□ -0.16
CIITA-202ENST00000381835 VWA3AA6NCI4 1184 aa14.03□□□□□ -0.16
CIITA-202ENST00000381835 CTAGE5O15320 804 aa14.03□□□□□ -0.16
CIITA-202ENST00000381835 EDIL3O43854 480 aa14.03□□□□□ -0.16
CIITA-202ENST00000381835 NEMFO60524 1076 aa14.03□□□□□ -0.16
CIITA-202ENST00000381835 TDP2O95551 362 aa14.03□□□□□ -0.16
CIITA-202ENST00000381835 FOSP01100 380 aaPredicted RBP14.03□□□□□ -0.16
CIITA-202ENST00000381835 HOXA7P31268 230 aaPredicted RBP14.03□□□□□ -0.16
CIITA-202ENST00000381835 NDUFA8P51970 172 aa14.03□□□□□ -0.16
CIITA-202ENST00000381835 IQCB1Q15051 598 aa14.03□□□□□ -0.16
CIITA-202ENST00000381835 FASTKD5Q7L8L6 764 aaKnown RBP14.03□□□□□ -0.16
CIITA-202ENST00000381835 C4orf32Q8N8J7 132 aa14.03□□□□□ -0.16
CIITA-202ENST00000381835 REPS2Q8NFH8 660 aa14.03□□□□□ -0.16
CIITA-202ENST00000381835 CLEC4DQ8WXI8 215 aa14.03□□□□□ -0.16
CIITA-202ENST00000381835 TRERF1Q96PN7 1200 aa14.03□□□□□ -0.16
CIITA-202ENST00000381835 CSRNP2Q9H175 543 aa14.03□□□□□ -0.16
CIITA-202ENST00000381835 ZNF214Q9UL59 606 aaPredicted RBP14.03□□□□□ -0.16
CIITA-202ENST00000381835 AGTPBP1Q9UPW5 1226 aa14.03□□□□□ -0.16
CIITA-202ENST00000381835 MYPNQ86TC9 1320 aa14.03□□□□□ -0.16
CIITA-202ENST00000381835 PFKFB1P16118 471 aa14.02□□□□□ -0.16
CIITA-202ENST00000381835 FAM160A1Q05DH4 1040 aa14.02□□□□□ -0.16
CIITA-202ENST00000381835 MOGSQ13724 837 aa14.02□□□□□ -0.16
CIITA-202ENST00000381835 STX1AQ16623 288 aa14.02□□□□□ -0.16
CIITA-202ENST00000381835 MCTP2Q6DN12 878 aa14.02□□□□□ -0.16
CIITA-202ENST00000381835 SARM1Q6SZW1 724 aa14.02□□□□□ -0.16
CIITA-202ENST00000381835 C11orf57Q6ZUT1 292 aaPredicted RBP14.02□□□□□ -0.16
CIITA-202ENST00000381835 LRRC8AQ8IWT6 810 aa14.02□□□□□ -0.16
CIITA-202ENST00000381835 ZNF592Q92610 1267 aa14.02□□□□□ -0.16
CIITA-202ENST00000381835 FERMT2Q96AC1 680 aa14.02□□□□□ -0.16
CIITA-202ENST00000381835 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP14.02□□□□□ -0.17
CIITA-202ENST00000381835 PEX10O60683 326 aa14.02□□□□□ -0.17
CIITA-202ENST00000381835 HUNKP57058 714 aa14.02□□□□□ -0.17
CIITA-202ENST00000381835 ARHGAP4P98171 946 aa14.02□□□□□ -0.17
CIITA-202ENST00000381835 SNW1Q13573 536 aaKnown RBP14.02□□□□□ -0.17
CIITA-202ENST00000381835 RESP18Q5W5W9 173 aa14.02□□□□□ -0.17
CIITA-202ENST00000381835 POTEDQ86YR6 584 aa14.02□□□□□ -0.17
CIITA-202ENST00000381835 ASCC2Q9H1I8 757 aaPredicted RBP14.02□□□□□ -0.17
CIITA-202ENST00000381835 RNF146Q9NTX7 359 aa14.02□□□□□ -0.17
CIITA-202ENST00000381835 BECN2A8MW95 431 aa14.01□□□□□ -0.17
CIITA-202ENST00000381835 SLC37A4O43826 429 aa14.01□□□□□ -0.17
CIITA-202ENST00000381835 OAZ1P54368 228 aa14.01□□□□□ -0.17
CIITA-202ENST00000381835 CEP135Q66GS9 1140 aa14.01□□□□□ -0.17
CIITA-202ENST00000381835 MCF2L2Q86YR7 1114 aa14.01□□□□□ -0.17
CIITA-202ENST00000381835 ENGASEQ8NFI3 743 aa14.01□□□□□ -0.17
CIITA-202ENST00000381835 MRFAP1L1Q96HT8 127 aa14.01□□□□□ -0.17
CIITA-202ENST00000381835 TEX13BQ9BXU2 312 aa14.01□□□□□ -0.17
CIITA-202ENST00000381835 PNMA2Q9UL42 364 aa14.01□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms