RNA–Protein interactions for RNA: ENST00000377819.9

RTN3-206, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,937 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-206ENST00000377819 GUCY2FP51841 1108 aa11.53□□□□□ -0.56
RTN3-206ENST00000377819 TRAPPC3LQ5T215 181 aa11.53□□□□□ -0.56
RTN3-206ENST00000377819 ARHGAP30Q7Z6I6 1101 aaPredicted RBP11.53□□□□□ -0.56
RTN3-206ENST00000377819 PPM1KQ8N3J5 372 aa11.53□□□□□ -0.56
RTN3-206ENST00000377819 ZNF653Q96CK0 615 aa11.53□□□□□ -0.56
RTN3-206ENST00000377819 YY1AP1Q9H869 796 aa11.53□□□□□ -0.56
RTN3-206ENST00000377819 ACTR5Q9H9F9 607 aaPredicted RBP11.53□□□□□ -0.56
RTN3-206ENST00000377819 LRRC4Q9HBW1 653 aa11.53□□□□□ -0.56
RTN3-206ENST00000377819 METTL14Q9HCE5 456 aaKnown RBP11.53□□□□□ -0.56
RTN3-206ENST00000377819 DIABLOQ9NR28 239 aa11.53□□□□□ -0.56
RTN3-206ENST00000377819 CAMSAP2Q08AD1 1489 aa11.53□□□□□ -0.56
RTN3-206ENST00000377819 TROQ12816 1431 aaPredicted RBP11.53□□□□□ -0.56
RTN3-206ENST00000377819 HIBADHP31937 336 aaKnown RBP11.53□□□□□ -0.56
RTN3-206ENST00000377819 DCAF15Q66K64 600 aa11.53□□□□□ -0.56
RTN3-206ENST00000377819 KRT27Q7Z3Y8 459 aa11.53□□□□□ -0.56
RTN3-206ENST00000377819 LINS1Q8NG48 757 aa11.53□□□□□ -0.56
RTN3-206ENST00000377819 BUD13Q9BRD0 619 aaKnown RBP eCLIP11.53□□□□□ -0.56
RTN3-206ENST00000377819 CENPKQ9BS16 269 aa11.53□□□□□ -0.56
RTN3-206ENST00000377819 ESYT1Q9BSJ8 1104 aa11.53□□□□□ -0.56
RTN3-206ENST00000377819 OLFML3Q9NRN5 406 aa11.53□□□□□ -0.56
RTN3-206ENST00000377819 DDX28Q9NUL7 540 aaKnown RBP11.53□□□□□ -0.56
RTN3-206ENST00000377819 INTS9Q9NV88 658 aaKnown RBP11.53□□□□□ -0.56
RTN3-206ENST00000377819 TAB2Q9NYJ8 693 aa11.53□□□□□ -0.56
RTN3-206ENST00000377819 CFLARO15519 480 aa11.52□□□□□ -0.56
RTN3-206ENST00000377819 ORC4O43929 436 aa11.52□□□□□ -0.56
RTN3-206ENST00000377819 CUTAO60888 179 aa11.52□□□□□ -0.56
RTN3-206ENST00000377819 MBD4O95243 580 aa11.52□□□□□ -0.56
RTN3-206ENST00000377819 ANP32DO95626 131 aa11.52□□□□□ -0.56
RTN3-206ENST00000377819 RXRAP19793 462 aa11.52□□□□□ -0.56
RTN3-206ENST00000377819 CCNA1P78396 465 aa11.52□□□□□ -0.56
RTN3-206ENST00000377819 FANCCQ00597 558 aa11.52□□□□□ -0.56
RTN3-206ENST00000377819 APBA1Q02410 837 aa11.52□□□□□ -0.56
RTN3-206ENST00000377819 XKR9Q5GH70 373 aa11.52□□□□□ -0.56
RTN3-206ENST00000377819 RPAINQ86UA6 219 aa11.52□□□□□ -0.56
RTN3-206ENST00000377819 C2CD5Q86YS7 1000 aa11.52□□□□□ -0.56
RTN3-206ENST00000377819 DIS3L2Q8IYB7 885 aaKnown RBP11.52□□□□□ -0.56
RTN3-206ENST00000377819 TRIM8Q9BZR9 551 aa11.52□□□□□ -0.56
RTN3-206ENST00000377819 SAP30BPQ9UHR5 308 aaKnown RBP11.52□□□□□ -0.56
RTN3-206ENST00000377819 FIS1Q9Y3D6 152 aa11.52□□□□□ -0.56
RTN3-206ENST00000377819 POLR2DO15514 142 aaKnown RBP11.52□□□□□ -0.57
RTN3-206ENST00000377819 HSPD1P10809 573 aaKnown RBP11.52□□□□□ -0.57
RTN3-206ENST00000377819 CYP2J2P51589 502 aa11.52□□□□□ -0.57
RTN3-206ENST00000377819 TFDP1Q14186 410 aa11.52□□□□□ -0.57
RTN3-206ENST00000377819 KSR2Q6VAB6 950 aa11.52□□□□□ -0.57
RTN3-206ENST00000377819 OR8K1Q8NGG5 319 aa11.52□□□□□ -0.57
RTN3-206ENST00000377819 ULK4Q96C45 1275 aa11.52□□□□□ -0.57
RTN3-206ENST00000377819 SLC38A10Q9HBR0 1119 aa11.52□□□□□ -0.57
RTN3-206ENST00000377819 RGL1Q9NZL6 768 aa11.52□□□□□ -0.57
RTN3-206ENST00000377819 PCDHGB4Q9UN71 923 aa11.52□□□□□ -0.57
RTN3-206ENST00000377819 IFT172Q9UG01 1749 aa11.52□□□□□ -0.57
RTN3-206ENST00000377819 PDE1AP54750 535 aa11.52□□□□□ -0.57
RTN3-206ENST00000377819 MRPS15P82914 257 aaKnown RBP11.52□□□□□ -0.57
RTN3-206ENST00000377819 ANO1Q5XXA6 986 aa11.52□□□□□ -0.57
RTN3-206ENST00000377819 NIM1KQ8IY84 436 aa11.52□□□□□ -0.57
RTN3-206ENST00000377819 REXO1Q8N1G1 1221 aaKnown RBP11.52□□□□□ -0.57
RTN3-206ENST00000377819 TAB3Q8N5C8 712 aaPredicted RBP11.52□□□□□ -0.57
RTN3-206ENST00000377819 WDR48Q8TAF3 677 aa11.52□□□□□ -0.57
RTN3-206ENST00000377819 CCHCR1Q8TD31 782 aa11.52□□□□□ -0.57
RTN3-206ENST00000377819 USP6NLQ92738 828 aa11.52□□□□□ -0.57
RTN3-206ENST00000377819 AP5M1Q9H0R1 490 aa11.52□□□□□ -0.57
RTN3-206ENST00000377819 GGA1Q9UJY5 639 aa11.52□□□□□ -0.57
RTN3-206ENST00000377819 SDSP20132 328 aa11.52□□□□□ -0.57
RTN3-206ENST00000377819 FAM102BQ5T8I3 360 aa11.52□□□□□ -0.57
RTN3-206ENST00000377819 TTC19Q6DKK2 380 aaPredicted RBP11.52□□□□□ -0.57
RTN3-206ENST00000377819 SRPK1Q96SB4 655 aaKnown RBP11.52□□□□□ -0.57
RTN3-206ENST00000377819 SPZ1Q9BXG8 430 aa11.52□□□□□ -0.57
RTN3-206ENST00000377819 GEMIN8Q9NWZ8 242 aaKnown RBP11.52□□□□□ -0.57
RTN3-206ENST00000377819 GLI2P10070 1586 aa11.51□□□□□ -0.57
RTN3-206ENST00000377819 PLEKHG3A1L390 1219 aa11.51□□□□□ -0.57
RTN3-206ENST00000377819 GRAMD1BQ3KR37 738 aa11.51□□□□□ -0.57
RTN3-206ENST00000377819 TYW1BQ6NUM6 668 aa11.51□□□□□ -0.57
RTN3-206ENST00000377819 NLRP9Q7RTR0 991 aa11.51□□□□□ -0.57
RTN3-206ENST00000377819 DPH5Q9H2P9 285 aa11.51□□□□□ -0.57
RTN3-206ENST00000377819 ATP8A2Q9NTI2 1148 aa11.51□□□□□ -0.57
RTN3-206ENST00000377819 KDM3AQ9Y4C1 1321 aa11.51□□□□□ -0.57
RTN3-206ENST00000377819 IQGAP3Q86VI3 1631 aa11.51□□□□□ -0.57
RTN3-206ENST00000377819 CCDC78A2IDD5 438 aa11.51□□□□□ -0.57
RTN3-206ENST00000377819 GOLGA8KD6RF30 607 aa11.51□□□□□ -0.57
RTN3-206ENST00000377819 H0YIN7 160 aa11.51□□□□□ -0.57
RTN3-206ENST00000377819 ZSCAN20P17040 1043 aaPredicted RBP11.51□□□□□ -0.57
RTN3-206ENST00000377819 PAPOLAP51003 745 aaKnown RBP11.51□□□□□ -0.57
RTN3-206ENST00000377819 CHRNA2Q15822 529 aa11.51□□□□□ -0.57
RTN3-206ENST00000377819 ZSCAN26Q16670 478 aa11.51□□□□□ -0.57
RTN3-206ENST00000377819 USH1GQ495M9 461 aa11.51□□□□□ -0.57
RTN3-206ENST00000377819 ARMCX5Q6P1M9 558 aa11.51□□□□□ -0.57
RTN3-206ENST00000377819 FAM178BQ8IXR5 827 aa11.51□□□□□ -0.57
RTN3-206ENST00000377819 UHMK1Q8TAS1 419 aaKnown RBP11.51□□□□□ -0.57
RTN3-206ENST00000377819 CCDC51Q96ER9 411 aa11.51□□□□□ -0.57
RTN3-206ENST00000377819 ZFP42Q96MM3 310 aa11.51□□□□□ -0.57
RTN3-206ENST00000377819 ZBED2Q9BTP6 218 aa11.51□□□□□ -0.57
RTN3-206ENST00000377819 DMAP1Q9NPF5 467 aaPredicted RBP11.51□□□□□ -0.57
RTN3-206ENST00000377819 JAG2Q9Y219 1238 aa11.51□□□□□ -0.57
RTN3-206ENST00000377819 EIF2AK4Q9P2K8 1649 aaKnown RBP11.51□□□□□ -0.57
RTN3-206ENST00000377819 LRRIQ4A6NIV6 560 aa11.51□□□□□ -0.57
RTN3-206ENST00000377819 DPYSL4O14531 572 aa11.51□□□□□ -0.57
RTN3-206ENST00000377819 POLE2P56282 527 aa11.51□□□□□ -0.57
RTN3-206ENST00000377819 PRKCQQ04759 706 aa11.51□□□□□ -0.57
RTN3-206ENST00000377819 PPP1R2P3Q6NXS1 205 aa11.51□□□□□ -0.57
RTN3-206ENST00000377819 TTC30AQ86WT1 665 aa11.51□□□□□ -0.57
RTN3-206ENST00000377819 KLHL29Q96CT2 875 aa11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms