RNA–Protein interactions for RNA: ENST00000374943.8

HLA-DQB1-201, Transcript of major histocompatibility complex, class II, DQ beta 1, humanhuman

BASIC

Gene HLA-DQB1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQB1-201ENST00000374943 CNOT7Q9UIV1 285 aaKnown RBP20.24■□□□□ 0.83
HLA-DQB1-201ENST00000374943 ARHGAP4P98171 946 aa20.23■□□□□ 0.83
HLA-DQB1-201ENST00000374943 TMEM119Q4V9L6 283 aa20.23■□□□□ 0.83
HLA-DQB1-201ENST00000374943 KLHL10Q6JEL2 608 aa20.23■□□□□ 0.83
HLA-DQB1-201ENST00000374943 PLIN2Q99541 437 aa20.23■□□□□ 0.83
HLA-DQB1-201ENST00000374943 P2RX7Q99572 595 aaKnown RBP20.23■□□□□ 0.83
HLA-DQB1-201ENST00000374943 SAMSN1Q9NSI8 373 aaKnown RBP20.23■□□□□ 0.83
HLA-DQB1-201ENST00000374943 POTEMA6NI47 508 aa20.22■□□□□ 0.83
HLA-DQB1-201ENST00000374943 SPDYE3A6NKU9 549 aa20.22■□□□□ 0.83
HLA-DQB1-201ENST00000374943 TBX3O15119 743 aa20.22■□□□□ 0.83
HLA-DQB1-201ENST00000374943 PAK1Q13153 545 aa20.22■□□□□ 0.83
HLA-DQB1-201ENST00000374943 KMT5BQ4FZB7 885 aa20.22■□□□□ 0.83
HLA-DQB1-201ENST00000374943 Q4G0T1 1027 aa20.22■□□□□ 0.83
HLA-DQB1-201ENST00000374943 HYIQ5T013 277 aa20.22■□□□□ 0.83
HLA-DQB1-201ENST00000374943 KRT79Q5XKE5 535 aa20.22■□□□□ 0.83
HLA-DQB1-201ENST00000374943 NAP1L5Q96NT1 182 aaPredicted RBP20.22■□□□□ 0.83
HLA-DQB1-201ENST00000374943 INTS13Q9NVM9 706 aa20.22■□□□□ 0.83
HLA-DQB1-201ENST00000374943 FRMD4AQ9P2Q2 1039 aaPredicted RBP20.22■□□□□ 0.83
HLA-DQB1-201ENST00000374943 CTNND2Q9UQB3 1225 aa20.22■□□□□ 0.83
HLA-DQB1-201ENST00000374943 PHIPQ8WWQ0 1821 aa20.22■□□□□ 0.83
HLA-DQB1-201ENST00000374943 CDK11BP21127 795 aaKnown RBP20.22■□□□□ 0.83
HLA-DQB1-201ENST00000374943 CIITAP33076 1130 aa20.22■□□□□ 0.83
HLA-DQB1-201ENST00000374943 CCZ1BP86790 482 aa20.22■□□□□ 0.83
HLA-DQB1-201ENST00000374943 CCZ1P86791 482 aaPredicted RBP20.22■□□□□ 0.83
HLA-DQB1-201ENST00000374943 ARID5BQ14865 1188 aa20.22■□□□□ 0.83
HLA-DQB1-201ENST00000374943 KIF4BQ2VIQ3 1234 aa20.22■□□□□ 0.83
HLA-DQB1-201ENST00000374943 CNNM4Q6P4Q7 775 aa20.22■□□□□ 0.83
HLA-DQB1-201ENST00000374943 SLFN12Q8IYM2 578 aa20.22■□□□□ 0.83
HLA-DQB1-201ENST00000374943 ADSSL1Q8N142 457 aa20.22■□□□□ 0.83
HLA-DQB1-201ENST00000374943 GIMAP8Q8ND71 665 aaPredicted RBP20.22■□□□□ 0.83
HLA-DQB1-201ENST00000374943 NLGN2Q8NFZ4 835 aa20.22■□□□□ 0.83
HLA-DQB1-201ENST00000374943 SNX29Q8TEQ0 813 aa20.22■□□□□ 0.83
HLA-DQB1-201ENST00000374943 CCDC47Q96A33 483 aaKnown RBP20.22■□□□□ 0.83
HLA-DQB1-201ENST00000374943 BLOC1S4Q9NUP1 217 aa20.22■□□□□ 0.83
HLA-DQB1-201ENST00000374943 HACL1Q9UJ83 578 aa20.22■□□□□ 0.83
HLA-DQB1-201ENST00000374943 GJA3Q9Y6H8 435 aa20.22■□□□□ 0.83
HLA-DQB1-201ENST00000374943 ZNF541Q9H0D2 1346 aa20.22■□□□□ 0.83
HLA-DQB1-201ENST00000374943 CTNND1O60716 968 aaKnown RBP20.21■□□□□ 0.83
HLA-DQB1-201ENST00000374943 CYP3A4P08684 503 aa20.21■□□□□ 0.83
HLA-DQB1-201ENST00000374943 APTXQ7Z2E3 356 aaKnown RBP20.21■□□□□ 0.83
HLA-DQB1-201ENST00000374943 SAMD7Q7Z3H4 446 aa20.21■□□□□ 0.83
HLA-DQB1-201ENST00000374943 C17orf53Q8N3J3 647 aaPredicted RBP20.21■□□□□ 0.83
HLA-DQB1-201ENST00000374943 CDK5RAP3Q96JB5 506 aa20.21■□□□□ 0.83
HLA-DQB1-201ENST00000374943 GLIS2Q9BZE0 524 aaPredicted RBP20.21■□□□□ 0.83
HLA-DQB1-201ENST00000374943 PCDHA12Q9UN75 941 aa20.21■□□□□ 0.83
HLA-DQB1-201ENST00000374943 GDAQ9Y2T3 454 aa20.21■□□□□ 0.83
HLA-DQB1-201ENST00000374943 KDM3AQ9Y4C1 1321 aa20.21■□□□□ 0.83
HLA-DQB1-201ENST00000374943 A0A1B0GTH6 734 aa20.2■□□□□ 0.82
HLA-DQB1-201ENST00000374943 STX17P56962 302 aa20.2■□□□□ 0.82
HLA-DQB1-201ENST00000374943 TBC1D10BQ4KMP7 808 aaPredicted RBP20.2■□□□□ 0.82
HLA-DQB1-201ENST00000374943 COBLL1Q53SF7 1204 aa20.2■□□□□ 0.82
HLA-DQB1-201ENST00000374943 SV2BQ7L1I2 683 aa20.2■□□□□ 0.82
HLA-DQB1-201ENST00000374943 NELFBQ8WX92 580 aa20.2■□□□□ 0.82
HLA-DQB1-201ENST00000374943 LARP4BQ92615 738 aaKnown RBP20.2■□□□□ 0.82
HLA-DQB1-201ENST00000374943 LPAR1Q92633 364 aa20.2■□□□□ 0.82
HLA-DQB1-201ENST00000374943 KIAA1683Q9H0B3 1180 aa20.2■□□□□ 0.82
HLA-DQB1-201ENST00000374943 WDR46O15213 610 aaKnown RBP20.19■□□□□ 0.82
HLA-DQB1-201ENST00000374943 MARCH6O60337 910 aa20.19■□□□□ 0.82
HLA-DQB1-201ENST00000374943 HOXA7P31268 230 aaPredicted RBP20.19■□□□□ 0.82
HLA-DQB1-201ENST00000374943 PPP1R2P41236 205 aa20.19■□□□□ 0.82
HLA-DQB1-201ENST00000374943 PRCPP42785 496 aa20.19■□□□□ 0.82
HLA-DQB1-201ENST00000374943 STIM1Q13586 685 aa20.19■□□□□ 0.82
HLA-DQB1-201ENST00000374943 ARMCX5Q6P1M9 558 aa20.19■□□□□ 0.82
HLA-DQB1-201ENST00000374943 ETNPPLQ8TBG4 499 aa20.19■□□□□ 0.82
HLA-DQB1-201ENST00000374943 RAD54LQ92698 747 aa20.19■□□□□ 0.82
HLA-DQB1-201ENST00000374943 KIFC2Q96AC6 838 aa20.19■□□□□ 0.82
HLA-DQB1-201ENST00000374943 CTAGE1Q96RT6 745 aa20.19■□□□□ 0.82
HLA-DQB1-201ENST00000374943 ZNF341Q9BYN7 854 aa20.19■□□□□ 0.82
HLA-DQB1-201ENST00000374943 LRRC27Q9C0I9 530 aa20.19■□□□□ 0.82
HLA-DQB1-201ENST00000374943 DEFB129Q9H1M3 183 aa20.19■□□□□ 0.82
HLA-DQB1-201ENST00000374943 ABCB11O95342 1321 aa20.19■□□□□ 0.82
HLA-DQB1-201ENST00000374943 ASTN2O75129 1339 aaPredicted RBP20.19■□□□□ 0.82
HLA-DQB1-201ENST00000374943 SFPQP23246 707 aaKnown RBP eCLIP20.19■□□□□ 0.82
HLA-DQB1-201ENST00000374943 SPAG1Q07617 926 aa20.19■□□□□ 0.82
HLA-DQB1-201ENST00000374943 NR1I3Q14994 352 aa20.19■□□□□ 0.82
HLA-DQB1-201ENST00000374943 ZYXQ15942 572 aaKnown RBP20.19■□□□□ 0.82
HLA-DQB1-201ENST00000374943 LENG9Q96B70 501 aa20.19■□□□□ 0.82
HLA-DQB1-201ENST00000374943 FEZ1Q99689 392 aa20.19■□□□□ 0.82
HLA-DQB1-201ENST00000374943 NT5C3AQ9H0P0 336 aa20.19■□□□□ 0.82
HLA-DQB1-201ENST00000374943 MRPL11Q9Y3B7 192 aaKnown RBP20.19■□□□□ 0.82
HLA-DQB1-201ENST00000374943 SKILP12757 684 aa20.18■□□□□ 0.82
HLA-DQB1-201ENST00000374943 TAL1P17542 331 aaPredicted RBP20.18■□□□□ 0.82
HLA-DQB1-201ENST00000374943 KCNJ6P48051 423 aa20.18■□□□□ 0.82
HLA-DQB1-201ENST00000374943 ASIC1P78348 528 aa20.18■□□□□ 0.82
HLA-DQB1-201ENST00000374943 TBX2Q13207 712 aaPredicted RBP20.18■□□□□ 0.82
HLA-DQB1-201ENST00000374943 HSP90AA4PQ58FG1 418 aa20.18■□□□□ 0.82
HLA-DQB1-201ENST00000374943 DCAF15Q66K64 600 aa20.18■□□□□ 0.82
HLA-DQB1-201ENST00000374943 APOBEC3FQ8IUX4 373 aaKnown RBP20.18■□□□□ 0.82
HLA-DQB1-201ENST00000374943 HOOK2Q96ED9 719 aa20.18■□□□□ 0.82
HLA-DQB1-201ENST00000374943 NUDT12Q9BQG2 462 aa20.18■□□□□ 0.82
HLA-DQB1-201ENST00000374943 KCND1Q9NSA2 647 aa20.18■□□□□ 0.82
HLA-DQB1-201ENST00000374943 EXOC1Q9NV70 894 aa20.18■□□□□ 0.82
HLA-DQB1-201ENST00000374943 UTRNP46939 3433 aa20.18■□□□□ 0.82
HLA-DQB1-201ENST00000374943 POLR2AP24928 1970 aaKnown RBP20.17■□□□□ 0.82
HLA-DQB1-201ENST00000374943 PVALEFA0A1B0GWK0 134 aa20.17■□□□□ 0.82
HLA-DQB1-201ENST00000374943 H7C1D1 291 aa20.17■□□□□ 0.82
HLA-DQB1-201ENST00000374943 DHTKD1Q96HY7 919 aaPredicted RBP20.17■□□□□ 0.82
HLA-DQB1-201ENST00000374943 FAM20AQ96MK3 541 aa20.17■□□□□ 0.82
HLA-DQB1-201ENST00000374943 LIMA1Q9UHB6 759 aaKnown RBP20.17■□□□□ 0.82
HLA-DQB1-201ENST00000374943 SCAF8Q9UPN6 1271 aaKnown RBP20.17■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms