RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 IWS1Q96ST2 819 aa25.22■■□□□ 1.63
CCDC28B-201ENST00000373602 RMDN3Q96TC7 470 aa25.22■■□□□ 1.63
CCDC28B-201ENST00000373602 POLR3EQ9NVU0 708 aa25.22■■□□□ 1.63
CCDC28B-201ENST00000373602 PCDHA1Q9Y5I3 950 aa25.22■■□□□ 1.63
CCDC28B-201ENST00000373602 SLC27A2O14975 620 aa25.21■■□□□ 1.63
CCDC28B-201ENST00000373602 CYTH3O43739 400 aa25.21■■□□□ 1.63
CCDC28B-201ENST00000373602 CFBP00751 764 aa25.21■■□□□ 1.63
CCDC28B-201ENST00000373602 TXNP10599 105 aaKnown RBP25.21■■□□□ 1.63
CCDC28B-201ENST00000373602 HSD17B4P51659 736 aa25.21■■□□□ 1.63
CCDC28B-201ENST00000373602 TTLL4Q14679 1199 aa25.21■■□□□ 1.63
CCDC28B-201ENST00000373602 NECTIN1Q15223 517 aa25.21■■□□□ 1.63
CCDC28B-201ENST00000373602 Q7L0L9 218 aa25.21■■□□□ 1.63
CCDC28B-201ENST00000373602 HOMER1Q86YM7 354 aa25.21■■□□□ 1.63
CCDC28B-201ENST00000373602 PIGSQ96S52 555 aa25.21■■□□□ 1.63
CCDC28B-201ENST00000373602 LY9Q9HBG7 655 aa25.21■■□□□ 1.63
CCDC28B-201ENST00000373602 PSMC6P62333 389 aa25.2■■□□□ 1.62
CCDC28B-201ENST00000373602 PURAQ00577 322 aaKnown RBP25.2■■□□□ 1.62
CCDC28B-201ENST00000373602 STXBP2Q15833 593 aa25.2■■□□□ 1.62
CCDC28B-201ENST00000373602 MFSD5Q6N075 450 aa25.2■■□□□ 1.62
CCDC28B-201ENST00000373602 SAMD3Q8N6K7 520 aa25.2■■□□□ 1.62
CCDC28B-201ENST00000373602 COPS5Q92905 334 aa25.2■■□□□ 1.62
CCDC28B-201ENST00000373602 MAP3K14Q99558 947 aa25.2■■□□□ 1.62
CCDC28B-201ENST00000373602 ANO2Q9NQ90 1003 aa25.2■■□□□ 1.62
CCDC28B-201ENST00000373602 MAP3K20Q9NYL2 800 aaKnown RBP25.2■■□□□ 1.62
CCDC28B-201ENST00000373602 PRC1O43663 620 aa25.19■■□□□ 1.62
CCDC28B-201ENST00000373602 ARIH2O95376 493 aa25.19■■□□□ 1.62
CCDC28B-201ENST00000373602 MCM5P33992 734 aa25.19■■□□□ 1.62
CCDC28B-201ENST00000373602 TRAF1Q13077 416 aa25.19■■□□□ 1.62
CCDC28B-201ENST00000373602 ARHGEF16Q5VV41 709 aa25.19■■□□□ 1.62
CCDC28B-201ENST00000373602 CREB3L3Q68CJ9 461 aa25.19■■□□□ 1.62
CCDC28B-201ENST00000373602 FAM109BQ6ICB4 259 aaPredicted RBP25.19■■□□□ 1.62
CCDC28B-201ENST00000373602 CCDC62Q6P9F0 684 aa25.19■■□□□ 1.62
CCDC28B-201ENST00000373602 CASC1Q6TDU7 716 aa25.19■■□□□ 1.62
CCDC28B-201ENST00000373602 GPHNQ9NQX3 736 aaPredicted RBP25.19■■□□□ 1.62
CCDC28B-201ENST00000373602 PXMP2Q9NR77 195 aa25.19■■□□□ 1.62
CCDC28B-201ENST00000373602 PNMA6FA0A0J9YX94 578 aa25.18■■□□□ 1.62
CCDC28B-201ENST00000373602 A6NJR5 290 aa25.18■■□□□ 1.62
CCDC28B-201ENST00000373602 MYL3P08590 195 aa25.18■■□□□ 1.62
CCDC28B-201ENST00000373602 EIF2AK2P19525 551 aaKnown RBP25.18■■□□□ 1.62
CCDC28B-201ENST00000373602 BRDTQ58F21 947 aaPredicted RBP25.18■■□□□ 1.62
CCDC28B-201ENST00000373602 SEPT14Q6ZU15 432 aa25.18■■□□□ 1.62
CCDC28B-201ENST00000373602 ZNF654Q8IZM8 581 aa25.18■■□□□ 1.62
CCDC28B-201ENST00000373602 MTMR10Q9NXD2 777 aa25.18■■□□□ 1.62
CCDC28B-201ENST00000373602 DDAH1O94760 285 aa25.17■■□□□ 1.62
CCDC28B-201ENST00000373602 NR3C2P08235 984 aa25.17■■□□□ 1.62
CCDC28B-201ENST00000373602 TMEM87BQ96K49 555 aa25.17■■□□□ 1.62
CCDC28B-201ENST00000373602 MTG1Q9BT17 334 aaPredicted RBP25.17■■□□□ 1.62
CCDC28B-201ENST00000373602 PPP1R12CQ9BZL4 782 aa25.17■■□□□ 1.62
CCDC28B-201ENST00000373602 BAZ2BQ9UIF8 2168 aaKnown RBP25.17■■□□□ 1.62
CCDC28B-201ENST00000373602 SH2B2O14492 632 aaPredicted RBP25.16■■□□□ 1.62
CCDC28B-201ENST00000373602 B4GALT4O60513 344 aa25.16■■□□□ 1.62
CCDC28B-201ENST00000373602 KPNA6O60684 536 aa25.16■■□□□ 1.62
CCDC28B-201ENST00000373602 EIF3JO75822 258 aaKnown RBP25.16■■□□□ 1.62
CCDC28B-201ENST00000373602 PPIGQ13427 754 aaKnown RBP eCLIP25.16■■□□□ 1.62
CCDC28B-201ENST00000373602 COL9A3Q14050 684 aaPredicted RBP25.16■■□□□ 1.62
CCDC28B-201ENST00000373602 TMTC2Q8N394 836 aa25.16■■□□□ 1.62
CCDC28B-201ENST00000373602 TMEM199Q8N511 208 aa25.16■■□□□ 1.62
CCDC28B-201ENST00000373602 CTCFLQ8NI51 663 aaPredicted RBP25.16■■□□□ 1.62
CCDC28B-201ENST00000373602 RNPC3Q96LT9 517 aaKnown RBP25.16■■□□□ 1.62
CCDC28B-201ENST00000373602 MYL10Q9BUA6 226 aa25.16■■□□□ 1.62
CCDC28B-201ENST00000373602 TRPV6Q9H1D0 765 aa25.16■■□□□ 1.62
CCDC28B-201ENST00000373602 LIFRP42702 1097 aa25.15■■□□□ 1.62
CCDC28B-201ENST00000373602 SMAD3P84022 425 aaKnown RBP25.15■■□□□ 1.62
CCDC28B-201ENST00000373602 PDCD2LQ9BRP1 358 aa25.15■■□□□ 1.62
CCDC28B-201ENST00000373602 ALDH8A1Q9H2A2 487 aaPredicted RBP25.15■■□□□ 1.62
CCDC28B-201ENST00000373602 GCOM1H8Y6P7 765 aaPredicted RBP25.14■■□□□ 1.62
CCDC28B-201ENST00000373602 GH1P01241 217 aa25.14■■□□□ 1.62
CCDC28B-201ENST00000373602 POLR2MP0CAP2 368 aa25.14■■□□□ 1.62
CCDC28B-201ENST00000373602 CSF2RAP15509 400 aa25.14■■□□□ 1.62
CCDC28B-201ENST00000373602 SMARCA1P28370 1054 aa25.14■■□□□ 1.62
CCDC28B-201ENST00000373602 HOXA13P31271 388 aaPredicted RBP25.14■■□□□ 1.62
CCDC28B-201ENST00000373602 KIF5BP33176 963 aa25.14■■□□□ 1.62
CCDC28B-201ENST00000373602 CYP2C18P33260 490 aa25.14■■□□□ 1.62
CCDC28B-201ENST00000373602 LY6KQ17RY6 165 aa25.14■■□□□ 1.62
CCDC28B-201ENST00000373602 C16orf59Q7L2K0 433 aa25.14■■□□□ 1.62
CCDC28B-201ENST00000373602 BUD13Q9BRD0 619 aaKnown RBP eCLIP25.14■■□□□ 1.62
CCDC28B-201ENST00000373602 SPZ1Q9BXG8 430 aa25.14■■□□□ 1.62
CCDC28B-201ENST00000373602 HIPK3Q9H422 1215 aa25.14■■□□□ 1.62
CCDC28B-201ENST00000373602 DDX41Q9UJV9 622 aaKnown RBP25.14■■□□□ 1.62
CCDC28B-201ENST00000373602 KIAA1217Q5T5P2 1943 aa25.14■■□□□ 1.61
CCDC28B-201ENST00000373602 SCN10AQ9Y5Y9 1956 aa25.13■■□□□ 1.61
CCDC28B-201ENST00000373602 CCDC69A6NI79 296 aa25.13■■□□□ 1.61
CCDC28B-201ENST00000373602 ARHGAP1Q07960 439 aa25.13■■□□□ 1.61
CCDC28B-201ENST00000373602 RNF20Q5VTR2 975 aa25.13■■□□□ 1.61
CCDC28B-201ENST00000373602 NFXL1Q6ZNB6 911 aa25.13■■□□□ 1.61
CCDC28B-201ENST00000373602 LZTS2Q9BRK4 669 aa25.13■■□□□ 1.61
CCDC28B-201ENST00000373602 NOC4LQ9BVI4 516 aaKnown RBP25.13■■□□□ 1.61
CCDC28B-201ENST00000373602 CDC45O75419 566 aa25.12■■□□□ 1.61
CCDC28B-201ENST00000373602 NBPF20Q3BBV1 942 aa25.12■■□□□ 1.61
CCDC28B-201ENST00000373602 TMEM240Q5SV17 173 aa25.12■■□□□ 1.61
CCDC28B-201ENST00000373602 VSIG10LQ86VR7 867 aa25.12■■□□□ 1.61
CCDC28B-201ENST00000373602 AFG1LQ8WV93 481 aa25.12■■□□□ 1.61
CCDC28B-201ENST00000373602 UMODL1Q5DID0 1318 aa25.12■■□□□ 1.61
CCDC28B-201ENST00000373602 SUPT20HL2P0C7V6 817 aa25.11■■□□□ 1.61
CCDC28B-201ENST00000373602 MYCLP12524 364 aaPredicted RBP25.11■■□□□ 1.61
CCDC28B-201ENST00000373602 GNAQP50148 359 aa25.11■■□□□ 1.61
CCDC28B-201ENST00000373602 PGM5Q15124 567 aa25.11■■□□□ 1.61
CCDC28B-201ENST00000373602 NFRKBQ6P4R8 1299 aa25.11■■□□□ 1.61
CCDC28B-201ENST00000373602 PIBF1Q8WXW3 757 aa25.11■■□□□ 1.61
CCDC28B-201ENST00000373602 RRP36Q96EU6 259 aaKnown RBP25.11■■□□□ 1.61
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms