RNA–Protein interactions for RNA: ENST00000354071.7

BRCA1-202, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best) BASIC

Gene BRCA1, Length 4,497 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-202ENST00000354071 PPM1BO75688 479 aa2.12□□□□□ -2.07
BRCA1-202ENST00000354071 PRAMEF1O95521 474 aa2.12□□□□□ -2.07
BRCA1-202ENST00000354071 CT47B1P0C2W7 299 aaPredicted RBP2.12□□□□□ -2.07
BRCA1-202ENST00000354071 PTX3P26022 381 aaPredicted RBP2.12□□□□□ -2.07
BRCA1-202ENST00000354071 DNM2P50570 870 aa2.12□□□□□ -2.07
BRCA1-202ENST00000354071 FOXD4Q12950 439 aaPredicted RBP2.12□□□□□ -2.07
BRCA1-202ENST00000354071 BBS9Q3SYG4 887 aa2.12□□□□□ -2.07
BRCA1-202ENST00000354071 FAM83BQ5T0W9 1011 aa2.12□□□□□ -2.07
BRCA1-202ENST00000354071 SHISA5Q8N114 240 aa2.12□□□□□ -2.07
BRCA1-202ENST00000354071 CPA6Q8N4T0 437 aa2.12□□□□□ -2.07
BRCA1-202ENST00000354071 RNF214Q8ND24 703 aa2.12□□□□□ -2.07
BRCA1-202ENST00000354071 PCDH19Q8TAB3 1148 aa2.12□□□□□ -2.07
BRCA1-202ENST00000354071 LDHAL6BQ9BYZ2 381 aaPredicted RBP2.12□□□□□ -2.07
BRCA1-202ENST00000354071 TMX1Q9H3N1 280 aa2.12□□□□□ -2.07
BRCA1-202ENST00000354071 LUC7LQ9NQ29 371 aaKnown RBP2.12□□□□□ -2.07
BRCA1-202ENST00000354071 CLEC1BQ9P126 229 aa2.12□□□□□ -2.07
BRCA1-202ENST00000354071 ZNF281Q9Y2X9 895 aa2.12□□□□□ -2.07
BRCA1-202ENST00000354071 DAGLAQ9Y4D2 1042 aa2.12□□□□□ -2.07
BRCA1-202ENST00000354071 DNAH14Q0VDD8 3507 aa2.11□□□□□ -2.07
BRCA1-202ENST00000354071 NOP56O00567 594 aaKnown RBP2.11□□□□□ -2.07
BRCA1-202ENST00000354071 XPOTO43592 962 aaKnown RBP2.11□□□□□ -2.07
BRCA1-202ENST00000354071 LEFTY1O75610 366 aa2.11□□□□□ -2.07
BRCA1-202ENST00000354071 CD3EP07766 207 aa2.11□□□□□ -2.07
BRCA1-202ENST00000354071 TMEM253P0C7T8 217 aa2.11□□□□□ -2.07
BRCA1-202ENST00000354071 OSMP13725 252 aa2.11□□□□□ -2.07
BRCA1-202ENST00000354071 SLC9A1P19634 815 aa2.11□□□□□ -2.07
BRCA1-202ENST00000354071 SCNN1BP51168 640 aa2.11□□□□□ -2.07
BRCA1-202ENST00000354071 USP14P54578 494 aa2.11□□□□□ -2.07
BRCA1-202ENST00000354071 SAFB2Q14151 953 aaKnown RBP eCLIP2.11□□□□□ -2.071e-6■□□□□ 10.7
BRCA1-202ENST00000354071 SLC6A19Q695T7 634 aa2.11□□□□□ -2.07
BRCA1-202ENST00000354071 STYK1Q6J9G0 422 aa2.11□□□□□ -2.07
BRCA1-202ENST00000354071 ZPBP2Q6X784 338 aa2.11□□□□□ -2.07
BRCA1-202ENST00000354071 MORC1Q86VD1 984 aa2.11□□□□□ -2.07
BRCA1-202ENST00000354071 FBXO11Q86XK2 927 aa2.11□□□□□ -2.07
BRCA1-202ENST00000354071 ZC3H7AQ8IWR0 971 aaKnown RBP2.11□□□□□ -2.07
BRCA1-202ENST00000354071 RBM12BQ8IXT5 1001 aaKnown RBP2.11□□□□□ -2.07
BRCA1-202ENST00000354071 C1orf162Q8NEQ5 155 aaPredicted RBP2.11□□□□□ -2.07
BRCA1-202ENST00000354071 KCNJ15Q99712 375 aa2.11□□□□□ -2.07
BRCA1-202ENST00000354071 KRTAP9-9Q9BYP9 154 aa2.11□□□□□ -2.07
BRCA1-202ENST00000354071 KRTAP9-4Q9BYQ2 154 aa2.11□□□□□ -2.07
BRCA1-202ENST00000354071 PUS7LQ9H0K6 701 aaKnown RBP2.11□□□□□ -2.07
BRCA1-202ENST00000354071 SEMA4AQ9H3S1 761 aa2.11□□□□□ -2.07
BRCA1-202ENST00000354071 PHF24Q9UPV7 400 aa2.11□□□□□ -2.07
BRCA1-202ENST00000354071 DNM3Q9UQ16 869 aa2.11□□□□□ -2.07
BRCA1-202ENST00000354071 PCDHGB3Q9Y5G1 929 aa2.11□□□□□ -2.07
BRCA1-202ENST00000354071 PTPDC1A2A3K4 754 aa2.11□□□□□ -2.07
BRCA1-202ENST00000354071 IFRD1O00458 451 aaPredicted RBP2.11□□□□□ -2.07
BRCA1-202ENST00000354071 FOSP01100 380 aaPredicted RBP2.11□□□□□ -2.07
BRCA1-202ENST00000354071 MAP7Q14244 749 aa2.11□□□□□ -2.07
BRCA1-202ENST00000354071 SUZ12Q15022 739 aaKnown RBP2.11□□□□□ -2.07
BRCA1-202ENST00000354071 PCSK7Q16549 785 aa2.11□□□□□ -2.07
BRCA1-202ENST00000354071 DUOXA2Q1HG44 320 aa2.11□□□□□ -2.07
BRCA1-202ENST00000354071 NBPF9Q3BBW0 867 aa2.11□□□□□ -2.07
BRCA1-202ENST00000354071 TMEM177Q53S58 311 aa2.11□□□□□ -2.07
BRCA1-202ENST00000354071 LETMD1Q6P1Q0 360 aa2.11□□□□□ -2.07
BRCA1-202ENST00000354071 PPP1R35Q8TAP8 253 aa2.11□□□□□ -2.07
BRCA1-202ENST00000354071 UBE2Q2Q8WVN8 375 aa2.11□□□□□ -2.07
BRCA1-202ENST00000354071 KCTD13Q8WZ19 329 aa2.11□□□□□ -2.07
BRCA1-202ENST00000354071 AHCYL2Q96HN2 611 aaKnown RBP2.11□□□□□ -2.07
BRCA1-202ENST00000354071 Q96M66 194 aa2.11□□□□□ -2.07
BRCA1-202ENST00000354071 MED14O60244 1454 aa2.11□□□□□ -2.07
BRCA1-202ENST00000354071 CHD4Q14839 1912 aa2.11□□□□□ -2.07
BRCA1-202ENST00000354071 CCDC163A0A0D9SF12 145 aa2.11□□□□□ -2.07
BRCA1-202ENST00000354071 DVL2O14641 736 aa2.11□□□□□ -2.07
BRCA1-202ENST00000354071 PLIN1O60240 522 aa2.11□□□□□ -2.07
BRCA1-202ENST00000354071 BRINP1O60477 761 aa2.11□□□□□ -2.07
BRCA1-202ENST00000354071 WDHD1O75717 1129 aaPredicted RBP2.11□□□□□ -2.07
BRCA1-202ENST00000354071 EIF3JO75822 258 aaKnown RBP2.11□□□□□ -2.07
BRCA1-202ENST00000354071 CST3P01034 146 aaPredicted RBP2.11□□□□□ -2.07
BRCA1-202ENST00000354071 SLFN14P0C7P3 912 aa2.11□□□□□ -2.07
BRCA1-202ENST00000354071 PLS3P13797 630 aa2.11□□□□□ -2.07
BRCA1-202ENST00000354071 LPOP22079 712 aaPredicted RBP2.11□□□□□ -2.07
BRCA1-202ENST00000354071 CLUL1Q15846 466 aa2.11□□□□□ -2.07
BRCA1-202ENST00000354071 ARHGAP29Q52LW3 1261 aa2.11□□□□□ -2.07
BRCA1-202ENST00000354071 ZFYVE27Q5T4F4 411 aa2.11□□□□□ -2.07
BRCA1-202ENST00000354071 CPZQ66K79 652 aa2.11□□□□□ -2.07
BRCA1-202ENST00000354071 GPAT2Q6NUI2 795 aa2.11□□□□□ -2.07
BRCA1-202ENST00000354071 CDPF1Q6NVV7 123 aa2.11□□□□□ -2.07
BRCA1-202ENST00000354071 SYDE1Q6ZW31 735 aaPredicted RBP2.11□□□□□ -2.07
BRCA1-202ENST00000354071 ACAD11Q709F0 780 aa2.11□□□□□ -2.07
BRCA1-202ENST00000354071 C12orf50Q8NA57 414 aaPredicted RBP2.11□□□□□ -2.07
BRCA1-202ENST00000354071 OR2W6PQ8NHA6 318 aa2.11□□□□□ -2.07
BRCA1-202ENST00000354071 DDX54Q8TDD1 881 aaKnown RBP2.11□□□□□ -2.07
BRCA1-202ENST00000354071 RIN2Q8WYP3 895 aaPredicted RBP2.11□□□□□ -2.07
BRCA1-202ENST00000354071 CLIP3Q96DZ5 547 aa2.11□□□□□ -2.07
BRCA1-202ENST00000354071 FAXDC2Q96IV6 333 aa2.11□□□□□ -2.07
BRCA1-202ENST00000354071 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP2.11□□□□□ -2.07
BRCA1-202ENST00000354071 PRDM12Q9H4Q4 367 aa2.11□□□□□ -2.07
BRCA1-202ENST00000354071 GDF2Q9UK05 429 aaPredicted RBP2.11□□□□□ -2.07
BRCA1-202ENST00000354071 FRMPD2Q68DX3 1309 aaPredicted RBP2.11□□□□□ -2.07
BRCA1-202ENST00000354071 ITGA4P13612 1032 aa2.11□□□□□ -2.07
BRCA1-202ENST00000354071 ASPAP45381 313 aa2.11□□□□□ -2.07
BRCA1-202ENST00000354071 PREPP48147 710 aa2.11□□□□□ -2.07
BRCA1-202ENST00000354071 LMOD3Q0VAK6 560 aa2.11□□□□□ -2.07
BRCA1-202ENST00000354071 LRRC32Q14392 662 aa2.11□□□□□ -2.07
BRCA1-202ENST00000354071 SEC23AQ15436 765 aa2.11□□□□□ -2.07
BRCA1-202ENST00000354071 DDB1Q16531 1140 aa2.11□□□□□ -2.07
BRCA1-202ENST00000354071 GFOD2Q3B7J2 385 aa2.11□□□□□ -2.07
BRCA1-202ENST00000354071 ZC3H12BQ5HYM0 836 aaKnown RBP2.11□□□□□ -2.07
BRCA1-202ENST00000354071 ZC3HAV1Q7Z2W4 902 aaKnown RBP2.11□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms