RNA–Protein interactions for RNA: ENST00000345865.6

UPF3B-202, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3B, Length 2,335 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-202ENST00000345865 COBLL1Q53SF7 1204 aa17.26■□□□□ 0.35
UPF3B-202ENST00000345865 KIAA0825Q8IV33 1275 aa17.26■□□□□ 0.35
UPF3B-202ENST00000345865 CCDC47Q96A33 483 aaKnown RBP17.26■□□□□ 0.35
UPF3B-202ENST00000345865 TFR2Q9UP52 801 aa17.26■□□□□ 0.35
UPF3B-202ENST00000345865 SEC31AO94979 1220 aaKnown RBP17.26■□□□□ 0.35
UPF3B-202ENST00000345865 HLA-DOAP06340 250 aa17.26■□□□□ 0.35
UPF3B-202ENST00000345865 GPATCH4Q5T3I0 446 aaKnown RBP17.26■□□□□ 0.35
UPF3B-202ENST00000345865 PPP4R3AQ6IN85 833 aa17.26■□□□□ 0.35
UPF3B-202ENST00000345865 CENPPQ6IPU0 288 aa17.26■□□□□ 0.35
UPF3B-202ENST00000345865 PPP1R18Q6NYC8 613 aa17.26■□□□□ 0.35
UPF3B-202ENST00000345865 CNNM4Q6P4Q7 775 aa17.26■□□□□ 0.35
UPF3B-202ENST00000345865 KRT222Q8N1A0 295 aa17.26■□□□□ 0.35
UPF3B-202ENST00000345865 GLIS3Q8NEA6 775 aa17.26■□□□□ 0.35
UPF3B-202ENST00000345865 SNX29Q8TEQ0 813 aa17.26■□□□□ 0.35
UPF3B-202ENST00000345865 UIMC1Q96RL1 719 aa17.26■□□□□ 0.35
UPF3B-202ENST00000345865 ST7Q9NRC1 585 aa17.26■□□□□ 0.35
UPF3B-202ENST00000345865 STK17AQ9UEE5 414 aa17.26■□□□□ 0.35
UPF3B-202ENST00000345865 ARFGEF1Q9Y6D6 1849 aa17.26■□□□□ 0.35
UPF3B-202ENST00000345865 G3V3G9 751 aa17.25■□□□□ 0.35
UPF3B-202ENST00000345865 TBC1D8BQ0IIM8 1120 aa17.25■□□□□ 0.35
UPF3B-202ENST00000345865 TMEM266Q2M3C6 531 aa17.25■□□□□ 0.35
UPF3B-202ENST00000345865 DCAF8Q5TAQ9 597 aa17.25■□□□□ 0.35
UPF3B-202ENST00000345865 UNC13DQ70J99 1090 aa17.25■□□□□ 0.35
UPF3B-202ENST00000345865 SH3BP5LQ7L8J4 393 aa17.25■□□□□ 0.35
UPF3B-202ENST00000345865 RAD54LQ92698 747 aa17.25■□□□□ 0.35
UPF3B-202ENST00000345865 CUL5Q93034 780 aa17.25■□□□□ 0.35
UPF3B-202ENST00000345865 MASTLQ96GX5 879 aa17.25■□□□□ 0.35
UPF3B-202ENST00000345865 ZDHHC15Q96MV8 337 aa17.25■□□□□ 0.35
UPF3B-202ENST00000345865 EHD4Q9H223 541 aa17.25■□□□□ 0.35
UPF3B-202ENST00000345865 DDX25Q9UHL0 483 aaKnown RBP17.25■□□□□ 0.35
UPF3B-202ENST00000345865 CDC23Q9UJX2 597 aa17.25■□□□□ 0.35
UPF3B-202ENST00000345865 PDE6BP35913 854 aa17.25■□□□□ 0.35
UPF3B-202ENST00000345865 DMTNQ08495 405 aa17.25■□□□□ 0.35
UPF3B-202ENST00000345865 TMEM119Q4V9L6 283 aa17.25■□□□□ 0.35
UPF3B-202ENST00000345865 MSL1Q68DK7 614 aa17.25■□□□□ 0.35
UPF3B-202ENST00000345865 SIAH1Q8IUQ4 282 aa17.25■□□□□ 0.35
UPF3B-202ENST00000345865 FAM198AQ9UFP1 575 aa17.25■□□□□ 0.35
UPF3B-202ENST00000345865 USP17L15C9J2P7 530 aa17.24■□□□□ 0.35
UPF3B-202ENST00000345865 USP17L13C9JLJ4 530 aa17.24■□□□□ 0.35
UPF3B-202ENST00000345865 USP17L11C9JVI0 530 aa17.24■□□□□ 0.35
UPF3B-202ENST00000345865 USP17L18D6R9N7 530 aa17.24■□□□□ 0.35
UPF3B-202ENST00000345865 USP17L22D6RA61 530 aa17.24■□□□□ 0.35
UPF3B-202ENST00000345865 USP17L17D6RBQ6 530 aa17.24■□□□□ 0.35
UPF3B-202ENST00000345865 USP17L19D6RCP7 530 aa17.24■□□□□ 0.35
UPF3B-202ENST00000345865 USP17L20D6RJB6 530 aa17.24■□□□□ 0.35
UPF3B-202ENST00000345865 PNMA6AP0CW24 399 aaPredicted RBP17.24■□□□□ 0.35
UPF3B-202ENST00000345865 EEF2P13639 858 aaKnown RBP17.24■□□□□ 0.35
UPF3B-202ENST00000345865 HERVK_113P62684 666 aa17.24■□□□□ 0.35
UPF3B-202ENST00000345865 USP17L24Q0WX57 530 aa17.24■□□□□ 0.35
UPF3B-202ENST00000345865 KIF4BQ2VIQ3 1234 aa17.24■□□□□ 0.35
UPF3B-202ENST00000345865 USP17L6PQ6QN14 398 aa17.24■□□□□ 0.35
UPF3B-202ENST00000345865 ZSCAN29Q8IWY8 852 aaPredicted RBP17.24■□□□□ 0.35
UPF3B-202ENST00000345865 GPR161Q8N6U8 529 aaKnown RBP17.24■□□□□ 0.35
UPF3B-202ENST00000345865 ZNF622Q969S3 477 aaKnown RBP eCLIP17.24■□□□□ 0.353e-7■■■□□ 14.6
UPF3B-202ENST00000345865 NOC4LQ9BVI4 516 aaKnown RBP17.24■□□□□ 0.35
UPF3B-202ENST00000345865 PSTPIP2Q9H939 334 aa17.24■□□□□ 0.35
UPF3B-202ENST00000345865 PUF60Q9UHX1 559 aaKnown RBP17.24■□□□□ 0.35
UPF3B-202ENST00000345865 ATF5Q9Y2D1 282 aaPredicted RBP17.24■□□□□ 0.35
UPF3B-202ENST00000345865 PVALEFA0A1B0GWK0 134 aa17.24■□□□□ 0.35
UPF3B-202ENST00000345865 MTIF2P46199 727 aaKnown RBP17.24■□□□□ 0.35
UPF3B-202ENST00000345865 EHHADHQ08426 723 aa17.24■□□□□ 0.35
UPF3B-202ENST00000345865 MEA1Q16626 185 aa17.24■□□□□ 0.35
UPF3B-202ENST00000345865 KRT79Q5XKE5 535 aa17.24■□□□□ 0.35
UPF3B-202ENST00000345865 PODNQ7Z5L7 613 aa17.24■□□□□ 0.35
UPF3B-202ENST00000345865 DDX12PQ92771 950 aa17.24■□□□□ 0.35
UPF3B-202ENST00000345865 CDK5RAP3Q96JB5 506 aa17.24■□□□□ 0.35
UPF3B-202ENST00000345865 PARD6BQ9BYG5 372 aa17.24■□□□□ 0.35
UPF3B-202ENST00000345865 CTAGE9A4FU28 777 aa17.23■□□□□ 0.35
UPF3B-202ENST00000345865 RAD21O60216 631 aa17.23■□□□□ 0.35
UPF3B-202ENST00000345865 TRIM21P19474 475 aaKnown RBP17.23■□□□□ 0.35
UPF3B-202ENST00000345865 MRPL12P52815 198 aaKnown RBP17.23■□□□□ 0.35
UPF3B-202ENST00000345865 BMS1Q14692 1282 aaKnown RBP17.23■□□□□ 0.35
UPF3B-202ENST00000345865 QRICH1Q2TAL8 776 aa17.23■□□□□ 0.35
UPF3B-202ENST00000345865 SRGAP1Q7Z6B7 1085 aa17.23■□□□□ 0.35
UPF3B-202ENST00000345865 RABGGTAQ92696 567 aa17.23■□□□□ 0.35
UPF3B-202ENST00000345865 ZNF646O15015 1829 aaPredicted RBP17.23■□□□□ 0.35
UPF3B-202ENST00000345865 PPP1R2P41236 205 aa17.22■□□□□ 0.35
UPF3B-202ENST00000345865 TMCO3Q6UWJ1 677 aa17.22■□□□□ 0.35
UPF3B-202ENST00000345865 GOLGA1Q92805 767 aa17.22■□□□□ 0.35
UPF3B-202ENST00000345865 CCDC17Q96LX7 622 aa17.22■□□□□ 0.35
UPF3B-202ENST00000345865 P2RX7Q99572 595 aaKnown RBP17.22■□□□□ 0.35
UPF3B-202ENST00000345865 RAB34Q9BZG1 259 aa17.22■□□□□ 0.35
UPF3B-202ENST00000345865 IDEP14735 1019 aa17.22■□□□□ 0.35
UPF3B-202ENST00000345865 PLA2G4AP47712 749 aa17.22■□□□□ 0.35
UPF3B-202ENST00000345865 CHMP4BP1P59074 171 aa17.22■□□□□ 0.35
UPF3B-202ENST00000345865 LRRC41Q15345 812 aa17.22■□□□□ 0.35
UPF3B-202ENST00000345865 DACT2Q5SW24 774 aa17.22■□□□□ 0.35
UPF3B-202ENST00000345865 MKL1Q969V6 931 aa17.22■□□□□ 0.35
UPF3B-202ENST00000345865 DNAJC19Q96DA6 116 aa17.22■□□□□ 0.35
UPF3B-202ENST00000345865 ERGIC2Q96RQ1 377 aa17.22■□□□□ 0.35
UPF3B-202ENST00000345865 ARGLU1Q9NWB6 273 aaPredicted RBP17.22■□□□□ 0.35
UPF3B-202ENST00000345865 PRDM4Q9UKN5 801 aa17.22■□□□□ 0.35
UPF3B-202ENST00000345865 GUCA1BQ9UMX6 200 aa17.22■□□□□ 0.35
UPF3B-202ENST00000345865 SEPT2Q15019 361 aa17.21■□□□□ 0.35
UPF3B-202ENST00000345865 CERKLQ49MI3 558 aaPredicted RBP17.21■□□□□ 0.35
UPF3B-202ENST00000345865 CC2D1AQ6P1N0 951 aaPredicted RBP17.21■□□□□ 0.35
UPF3B-202ENST00000345865 FAM114A1Q8IWE2 563 aa17.21■□□□□ 0.35
UPF3B-202ENST00000345865 NAPGQ99747 312 aaPredicted RBP17.21■□□□□ 0.35
UPF3B-202ENST00000345865 ZNF219Q9P2Y4 722 aaPredicted RBP17.21■□□□□ 0.35
UPF3B-202ENST00000345865 PCDHA12Q9UN75 941 aa17.21■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms