RNA–Protein interactions for RNA: ENST00000345734.7

ATG4A-202, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 1 (best) BASIC

Gene ATG4A, Length 2,129 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-202ENST00000345734 NCOA4Q13772 614 aa10.5□□□□□ -0.73
ATG4A-202ENST00000345734 DLGAP5Q15398 846 aa10.5□□□□□ -0.73
ATG4A-202ENST00000345734 SOGA3Q5TF21 947 aa10.5□□□□□ -0.73
ATG4A-202ENST00000345734 ISM2Q6H9L7 571 aa10.5□□□□□ -0.73
ATG4A-202ENST00000345734 KRBA2Q6ZNG9 492 aa10.5□□□□□ -0.73
ATG4A-202ENST00000345734 KCTD1Q719H9 257 aa10.5□□□□□ -0.73
ATG4A-202ENST00000345734 SIAH1Q8IUQ4 282 aa10.5□□□□□ -0.73
ATG4A-202ENST00000345734 PDILTQ8N807 584 aa10.5□□□□□ -0.73
ATG4A-202ENST00000345734 CNNM3Q8NE01 707 aa10.5□□□□□ -0.73
ATG4A-202ENST00000345734 EPSTI1Q96J88 318 aa10.5□□□□□ -0.73
ATG4A-202ENST00000345734 ZMYND12Q9H0C1 365 aa10.5□□□□□ -0.73
ATG4A-202ENST00000345734 FAM13BQ9NYF5 915 aa10.5□□□□□ -0.73
ATG4A-202ENST00000345734 ZNF70Q9UC06 446 aaPredicted RBP10.5□□□□□ -0.73
ATG4A-202ENST00000345734 HDAC9Q9UKV0 1011 aa10.5□□□□□ -0.73
ATG4A-202ENST00000345734 MORC2Q9Y6X9 1032 aaPredicted RBP10.5□□□□□ -0.73
ATG4A-202ENST00000345734 CCDC194A0A1B0GVG4 234 aa10.49□□□□□ -0.73
ATG4A-202ENST00000345734 SHTN1A0MZ66 631 aa10.49□□□□□ -0.73
ATG4A-202ENST00000345734 SMCO2A6NFE2 343 aa10.49□□□□□ -0.73
ATG4A-202ENST00000345734 SLC16A2P36021 539 aa10.49□□□□□ -0.73
ATG4A-202ENST00000345734 PTPN5P54829 565 aa10.49□□□□□ -0.73
ATG4A-202ENST00000345734 IL17AQ16552 155 aa10.49□□□□□ -0.73
ATG4A-202ENST00000345734 INF2Q27J81 1249 aa10.49□□□□□ -0.73
ATG4A-202ENST00000345734 CCDC96Q2M329 555 aa10.49□□□□□ -0.73
ATG4A-202ENST00000345734 DPCR1Q3MIW9 517 aa10.49□□□□□ -0.73
ATG4A-202ENST00000345734 CRTC2Q53ET0 693 aaPredicted RBP10.49□□□□□ -0.73
ATG4A-202ENST00000345734 TMEM164Q5U3C3 297 aa10.49□□□□□ -0.73
ATG4A-202ENST00000345734 GALNT17Q6IS24 598 aa10.49□□□□□ -0.73
ATG4A-202ENST00000345734 DHX40Q8IX18 779 aaKnown RBP10.49□□□□□ -0.73
ATG4A-202ENST00000345734 OGFOD1Q8N543 542 aa10.49□□□□□ -0.73
ATG4A-202ENST00000345734 ADAM32Q8TC27 787 aa10.49□□□□□ -0.73
ATG4A-202ENST00000345734 ZNF516Q92618 1163 aa10.49□□□□□ -0.73
ATG4A-202ENST00000345734 COA7Q96BR5 231 aa10.49□□□□□ -0.73
ATG4A-202ENST00000345734 CSRNP1Q96S65 589 aa10.49□□□□□ -0.73
ATG4A-202ENST00000345734 KRTAP3-3Q9BYR6 98 aa10.49□□□□□ -0.73
ATG4A-202ENST00000345734 KRTAP3-2Q9BYR7 98 aa10.49□□□□□ -0.73
ATG4A-202ENST00000345734 VPS33BQ9H267 617 aa10.49□□□□□ -0.73
ATG4A-202ENST00000345734 SERTAD1Q9UHV2 236 aa10.49□□□□□ -0.73
ATG4A-202ENST00000345734 A0A087X0B3 334 aa10.49□□□□□ -0.73
ATG4A-202ENST00000345734 VWA3AA6NCI4 1184 aa10.49□□□□□ -0.73
ATG4A-202ENST00000345734 ESPNB1AK53 854 aa10.49□□□□□ -0.73
ATG4A-202ENST00000345734 CAVIN2O95810 425 aa10.49□□□□□ -0.73
ATG4A-202ENST00000345734 BMP15O95972 392 aa10.49□□□□□ -0.73
ATG4A-202ENST00000345734 ABCB5Q2M3G0 1257 aa10.49□□□□□ -0.73
ATG4A-202ENST00000345734 ADGRF4Q8IZF3 695 aa10.49□□□□□ -0.73
ATG4A-202ENST00000345734 C4orf32Q8N8J7 132 aa10.49□□□□□ -0.73
ATG4A-202ENST00000345734 FERMT2Q96AC1 680 aa10.49□□□□□ -0.73
ATG4A-202ENST00000345734 MTRQ99707 1265 aa10.49□□□□□ -0.73
ATG4A-202ENST00000345734 TAOK3Q9H2K8 898 aa10.49□□□□□ -0.73
ATG4A-202ENST00000345734 KANSL2Q9H9L4 492 aa10.49□□□□□ -0.73
ATG4A-202ENST00000345734 JMJD4Q9H9V9 463 aa10.49□□□□□ -0.73
ATG4A-202ENST00000345734 TMOD2Q9NZR1 351 aa10.49□□□□□ -0.73
ATG4A-202ENST00000345734 IVNS1ABPQ9Y6Y0 642 aa10.49□□□□□ -0.73
ATG4A-202ENST00000345734 ARFGEF1Q9Y6D6 1849 aa10.49□□□□□ -0.73
ATG4A-202ENST00000345734 SRCAPQ6ZRS2 3230 aa10.48□□□□□ -0.73
ATG4A-202ENST00000345734 NFKBIEO00221 500 aa10.48□□□□□ -0.73
ATG4A-202ENST00000345734 MMP16P51512 607 aa10.48□□□□□ -0.73
ATG4A-202ENST00000345734 NLRP12P59046 1061 aa10.48□□□□□ -0.73
ATG4A-202ENST00000345734 UTP14CQ5TAP6 766 aaKnown RBP10.48□□□□□ -0.73
ATG4A-202ENST00000345734 CDAN1Q8IWY9 1227 aa10.48□□□□□ -0.73
ATG4A-202ENST00000345734 GRAMD1CQ8IYS0 662 aa10.48□□□□□ -0.73
ATG4A-202ENST00000345734 CEP57L1Q8IYX8 460 aa10.48□□□□□ -0.73
ATG4A-202ENST00000345734 CCDC12Q8WUD4 166 aaPredicted RBP10.48□□□□□ -0.73
ATG4A-202ENST00000345734 MKL1Q969V6 931 aa10.48□□□□□ -0.73
ATG4A-202ENST00000345734 UNC93B1Q9H1C4 597 aa10.48□□□□□ -0.73
ATG4A-202ENST00000345734 VEZTQ9HBM0 779 aa10.48□□□□□ -0.73
ATG4A-202ENST00000345734 NYAP2Q9P242 653 aa10.48□□□□□ -0.73
ATG4A-202ENST00000345734 TUBE1Q9UJT0 475 aa10.48□□□□□ -0.73
ATG4A-202ENST00000345734 CNTNAP1P78357 1384 aa10.48□□□□□ -0.73
ATG4A-202ENST00000345734 COL2A1P02458 1487 aaPredicted RBP10.48□□□□□ -0.73
ATG4A-202ENST00000345734 USP17L10C9JJH3 530 aa10.48□□□□□ -0.73
ATG4A-202ENST00000345734 PPP1R11O60927 126 aaPredicted RBP10.48□□□□□ -0.73
ATG4A-202ENST00000345734 GH2P01242 217 aa10.48□□□□□ -0.73
ATG4A-202ENST00000345734 PTMAP06454 111 aaKnown RBP10.48□□□□□ -0.73
ATG4A-202ENST00000345734 ICA1Q05084 483 aa10.48□□□□□ -0.73
ATG4A-202ENST00000345734 PTK2Q05397 1052 aa10.48□□□□□ -0.73
ATG4A-202ENST00000345734 ZRSR1Q15695 479 aaKnown RBP10.48□□□□□ -0.73
ATG4A-202ENST00000345734 HS1BP3Q53T59 392 aa10.48□□□□□ -0.73
ATG4A-202ENST00000345734 SLFN13Q68D06 897 aa10.48□□□□□ -0.73
ATG4A-202ENST00000345734 TMEM179Q6ZVK1 233 aa10.48□□□□□ -0.73
ATG4A-202ENST00000345734 TEX2Q8IWB9 1127 aa10.48□□□□□ -0.73
ATG4A-202ENST00000345734 AGBL3Q8NEM8 1001 aa10.48□□□□□ -0.73
ATG4A-202ENST00000345734 XPO5Q9HAV4 1204 aaKnown RBP eCLIP10.48□□□□□ -0.73
ATG4A-202ENST00000345734 C6orf50Q9HD87 102 aa10.48□□□□□ -0.73
ATG4A-202ENST00000345734 BIN2Q9UBW5 565 aaPredicted RBP10.48□□□□□ -0.73
ATG4A-202ENST00000345734 BCS1LQ9Y276 419 aa10.48□□□□□ -0.73
ATG4A-202ENST00000345734 GNA11P29992 359 aa10.47□□□□□ -0.73
ATG4A-202ENST00000345734 GPATCH4Q5T3I0 446 aaKnown RBP10.47□□□□□ -0.73
ATG4A-202ENST00000345734 JAKMIP3Q5VZ66 844 aa10.47□□□□□ -0.73
ATG4A-202ENST00000345734 CIAPIN1Q6FI81 312 aa10.47□□□□□ -0.73
ATG4A-202ENST00000345734 RNF135Q8IUD6 432 aa10.47□□□□□ -0.73
ATG4A-202ENST00000345734 FAM177A1Q8N128 213 aaPredicted RBP10.47□□□□□ -0.73
ATG4A-202ENST00000345734 AOPEPQ8N6M6 819 aa10.47□□□□□ -0.73
ATG4A-202ENST00000345734 FAM151AQ8WW52 585 aa10.47□□□□□ -0.73
ATG4A-202ENST00000345734 DHX58Q96C10 678 aa10.47□□□□□ -0.73
ATG4A-202ENST00000345734 ARHGAP9Q9BRR9 750 aa10.47□□□□□ -0.73
ATG4A-202ENST00000345734 TMEM39BQ9GZU3 492 aa10.47□□□□□ -0.73
ATG4A-202ENST00000345734 TMEM60Q9H2L4 133 aa10.47□□□□□ -0.73
ATG4A-202ENST00000345734 TMEM260Q9NX78 707 aa10.47□□□□□ -0.73
ATG4A-202ENST00000345734 CCDC39Q9UFE4 941 aa10.47□□□□□ -0.73
ATG4A-202ENST00000345734 NOVA2Q9UNW9 492 aaKnown RBP10.47□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms