RNA–Protein interactions for RNA: ENST00000343599.5

ZNF540-202, Transcript of zinc finger protein 540, humanhuman

APPRIS P3 TSL 5 BASIC

Gene ZNF540, Length 3,073 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-202ENST00000343599 XPNPEP3Q9NQH7 507 aa8.47□□□□□ -1.05
ZNF540-202ENST00000343599 RAI14Q9P0K7 980 aa8.47□□□□□ -1.05
ZNF540-202ENST00000343599 BAZ2AQ9UIF9 1905 aaKnown RBP8.47□□□□□ -1.05
ZNF540-202ENST00000343599 NID2Q14112 1375 aa8.47□□□□□ -1.05
ZNF540-202ENST00000343599 FGBP02675 491 aa8.46□□□□□ -1.05
ZNF540-202ENST00000343599 SLC3A2P08195 630 aaKnown RBP8.46□□□□□ -1.05
ZNF540-202ENST00000343599 RCAN1P53805 252 aa8.46□□□□□ -1.05
ZNF540-202ENST00000343599 E2F4Q16254 413 aa8.46□□□□□ -1.05
ZNF540-202ENST00000343599 C22orf23Q9BZE7 217 aa8.46□□□□□ -1.05
ZNF540-202ENST00000343599 RASSF4Q9H2L5 321 aa8.46□□□□□ -1.05
ZNF540-202ENST00000343599 TXNRD2Q9NNW7 524 aa8.46□□□□□ -1.05
ZNF540-202ENST00000343599 DDX49Q9Y6V7 483 aaKnown RBP8.46□□□□□ -1.05
ZNF540-202ENST00000343599 CYP2C19P33261 490 aa8.46□□□□□ -1.06
ZNF540-202ENST00000343599 KCTD2Q14681 263 aa8.46□□□□□ -1.06
ZNF540-202ENST00000343599 CTC1Q2NKJ3 1217 aa8.46□□□□□ -1.06
ZNF540-202ENST00000343599 TMEM31Q5JXX7 168 aa8.46□□□□□ -1.06
ZNF540-202ENST00000343599 KRT222Q8N1A0 295 aa8.46□□□□□ -1.06
ZNF540-202ENST00000343599 NXPE3Q969Y0 559 aa8.46□□□□□ -1.06
ZNF540-202ENST00000343599 RPAP3Q9H6T3 665 aaPredicted RBP8.46□□□□□ -1.06
ZNF540-202ENST00000343599 DONSONQ9NYP3 566 aa8.46□□□□□ -1.06
ZNF540-202ENST00000343599 CNPY2Q9Y2B0 182 aa8.46□□□□□ -1.06
ZNF540-202ENST00000343599 DDX52Q9Y2R4 599 aaKnown RBP eCLIP8.46□□□□□ -1.06
ZNF540-202ENST00000343599 HMGCS2P54868 508 aa8.45□□□□□ -1.06
ZNF540-202ENST00000343599 SHHQ15465 462 aa8.45□□□□□ -1.06
ZNF540-202ENST00000343599 GPIHBP1Q8IV16 184 aa8.45□□□□□ -1.06
ZNF540-202ENST00000343599 KIF18AQ8NI77 898 aa8.45□□□□□ -1.06
ZNF540-202ENST00000343599 MTMR8Q96EF0 704 aa8.45□□□□□ -1.06
ZNF540-202ENST00000343599 RNPC3Q96LT9 517 aaKnown RBP8.45□□□□□ -1.06
ZNF540-202ENST00000343599 GLT1D1Q96MS3 346 aa8.45□□□□□ -1.06
ZNF540-202ENST00000343599 ACAD9Q9H845 621 aa8.45□□□□□ -1.06
ZNF540-202ENST00000343599 FLRT1Q9NZU1 646 aa8.45□□□□□ -1.06
ZNF540-202ENST00000343599 HNRNPH2P55795 449 aaKnown RBP8.45□□□□□ -1.06
ZNF540-202ENST00000343599 NCBP1Q09161 790 aaKnown RBP8.45□□□□□ -1.06
ZNF540-202ENST00000343599 GIT2Q14161 759 aa8.45□□□□□ -1.06
ZNF540-202ENST00000343599 SH3RF3Q8TEJ3 882 aaPredicted RBP8.45□□□□□ -1.06
ZNF540-202ENST00000343599 PABPC5Q96DU9 382 aaKnown RBP8.45□□□□□ -1.06
ZNF540-202ENST00000343599 SPATA32Q96LK8 384 aa8.45□□□□□ -1.06
ZNF540-202ENST00000343599 ELAC1Q9H777 363 aaKnown RBP8.45□□□□□ -1.06
ZNF540-202ENST00000343599 PCDHAC2Q9Y5I4 1007 aa8.45□□□□□ -1.06
ZNF540-202ENST00000343599 MTCH2Q9Y6C9 303 aa8.45□□□□□ -1.06
ZNF540-202ENST00000343599 EPB41L2O43491 1005 aaKnown RBP8.45□□□□□ -1.06
ZNF540-202ENST00000343599 KIF1CO43896 1103 aaKnown RBP8.45□□□□□ -1.06
ZNF540-202ENST00000343599 REC8O95072 547 aa8.45□□□□□ -1.06
ZNF540-202ENST00000343599 DNAJB2P25686 324 aa8.45□□□□□ -1.06
ZNF540-202ENST00000343599 SMAD4Q13485 552 aaKnown RBP8.45□□□□□ -1.06
ZNF540-202ENST00000343599 RRP1BQ14684 758 aaKnown RBP8.45□□□□□ -1.06
ZNF540-202ENST00000343599 CCDC146Q8IYE0 955 aa8.45□□□□□ -1.06
ZNF540-202ENST00000343599 VTI1AQ96AJ9 217 aa8.45□□□□□ -1.06
ZNF540-202ENST00000343599 RC3H2Q9HBD1 1191 aaKnown RBP8.45□□□□□ -1.06
ZNF540-202ENST00000343599 MAGEB6P1A0A0J9YX57 407 aa8.44□□□□□ -1.06
ZNF540-202ENST00000343599 LOC730098B7Z3J9 87 aa8.44□□□□□ -1.06
ZNF540-202ENST00000343599 hCG_1984214I3L0E3 225 aa8.44□□□□□ -1.06
ZNF540-202ENST00000343599 SNAI1O95863 264 aaPredicted RBP8.44□□□□□ -1.06
ZNF540-202ENST00000343599 ICAM1P05362 532 aa8.44□□□□□ -1.06
ZNF540-202ENST00000343599 ACVR2BQ13705 512 aa8.44□□□□□ -1.06
ZNF540-202ENST00000343599 TRIM71Q2Q1W2 868 aaKnown RBP8.44□□□□□ -1.06
ZNF540-202ENST00000343599 ZNF528Q3MIS6 628 aa8.44□□□□□ -1.06
ZNF540-202ENST00000343599 MUM1L1Q5H9M0 696 aa8.44□□□□□ -1.06
ZNF540-202ENST00000343599 DLK2Q6UY11 383 aa8.44□□□□□ -1.06
ZNF540-202ENST00000343599 SIAH1Q8IUQ4 282 aa8.44□□□□□ -1.06
ZNF540-202ENST00000343599 CMTR2Q8IYT2 770 aaKnown RBP8.44□□□□□ -1.06
ZNF540-202ENST00000343599 ZNF713Q8N859 430 aaPredicted RBP8.44□□□□□ -1.06
ZNF540-202ENST00000343599 DIS3LQ8TF46 1054 aaKnown RBP8.44□□□□□ -1.06
ZNF540-202ENST00000343599 CLP1Q92989 425 aaKnown RBP8.44□□□□□ -1.06
ZNF540-202ENST00000343599 ZNF594Q96JF6 807 aaPredicted RBP8.44□□□□□ -1.06
ZNF540-202ENST00000343599 MAFFQ9ULX9 164 aa8.44□□□□□ -1.06
ZNF540-202ENST00000343599 KIAA1549LQ6ZVL6 1849 aa8.44□□□□□ -1.06
ZNF540-202ENST00000343599 COBLO75128 1261 aa8.44□□□□□ -1.06
ZNF540-202ENST00000343599 PPP1R37O75864 691 aa8.44□□□□□ -1.06
ZNF540-202ENST00000343599 PCBP1Q15365 356 aaKnown RBP eCLIP8.44□□□□□ -1.06
ZNF540-202ENST00000343599 FOXD4L6Q3SYB3 417 aaPredicted RBP8.44□□□□□ -1.06
ZNF540-202ENST00000343599 TTC39AQ5SRH9 613 aa8.44□□□□□ -1.06
ZNF540-202ENST00000343599 FOXD4L3Q6VB84 417 aaPredicted RBP8.44□□□□□ -1.06
ZNF540-202ENST00000343599 UBALD2Q8IYN6 164 aa8.44□□□□□ -1.06
ZNF540-202ENST00000343599 ZDHHC14Q8IZN3 488 aa8.44□□□□□ -1.06
ZNF540-202ENST00000343599 BIN2Q9UBW5 565 aaPredicted RBP8.44□□□□□ -1.06
ZNF540-202ENST00000343599 FNDC1Q4ZHG4 1894 aaPredicted RBP8.44□□□□□ -1.06
ZNF540-202ENST00000343599 KIF28PB7ZC32 967 aa8.43□□□□□ -1.06
ZNF540-202ENST00000343599 INPPL1O15357 1258 aa8.43□□□□□ -1.06
ZNF540-202ENST00000343599 MAFGO15525 162 aa8.43□□□□□ -1.06
ZNF540-202ENST00000343599 GRM1Q13255 1194 aa8.43□□□□□ -1.06
ZNF540-202ENST00000343599 ZKSCAN2Q63HK3 967 aa8.43□□□□□ -1.06
ZNF540-202ENST00000343599 LRSAM1Q6UWE0 723 aa8.43□□□□□ -1.06
ZNF540-202ENST00000343599 MCF2L2Q86YR7 1114 aa8.43□□□□□ -1.06
ZNF540-202ENST00000343599 ADHFE1Q8IWW8 467 aa8.43□□□□□ -1.06
ZNF540-202ENST00000343599 MRPL38Q96DV4 380 aaKnown RBP8.43□□□□□ -1.06
ZNF540-202ENST00000343599 MSANTD3Q96H12 275 aa8.43□□□□□ -1.06
ZNF540-202ENST00000343599 DCP1AQ9NPI6 582 aaPredicted RBP8.43□□□□□ -1.06
ZNF540-202ENST00000343599 SH3BP1Q9Y3L3 701 aa8.43□□□□□ -1.06
ZNF540-202ENST00000343599 FSCN2O14926 492 aa8.43□□□□□ -1.06
ZNF540-202ENST00000343599 BAG4O95429 457 aaKnown RBP8.43□□□□□ -1.06
ZNF540-202ENST00000343599 ELNP15502 786 aa8.43□□□□□ -1.06
ZNF540-202ENST00000343599 STAT3P40763 770 aa8.43□□□□□ -1.06
ZNF540-202ENST00000343599 NBL1P41271 181 aa8.43□□□□□ -1.06
ZNF540-202ENST00000343599 TRIM60Q495X7 471 aa8.43□□□□□ -1.06
ZNF540-202ENST00000343599 TSR2Q969E8 191 aaKnown RBP8.43□□□□□ -1.06
ZNF540-202ENST00000343599 ERICH4A6NGS2 130 aa8.43□□□□□ -1.06
ZNF540-202ENST00000343599 POM121CA8CG34 1229 aa8.43□□□□□ -1.06
ZNF540-202ENST00000343599 CASQ1P31415 396 aa8.43□□□□□ -1.06
ZNF540-202ENST00000343599 NIPA1Q7RTP0 329 aa8.43□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms