RNA–Protein interactions for RNA: ENST00000341594.9

SYNE1-201, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SYNE1, Length 26,584 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-201ENST00000341594 CCDC84Q86UT8 332 aaPredicted RBP3.88□□□□□ -1.79
SYNE1-201ENST00000341594 NELFCDQ8IXH7 590 aa3.88□□□□□ -1.79
SYNE1-201ENST00000341594 CHCHD4Q8N4Q1 142 aa3.88□□□□□ -1.79
SYNE1-201ENST00000341594 ZNF507Q8TCN5 953 aa3.88□□□□□ -1.79
SYNE1-201ENST00000341594 TESK2Q96S53 571 aa3.88□□□□□ -1.79
SYNE1-201ENST00000341594 SERTAD1Q9UHV2 236 aa3.88□□□□□ -1.79
SYNE1-201ENST00000341594 BZW2Q9Y6E2 419 aaKnown RBP3.88□□□□□ -1.79
SYNE1-201ENST00000341594 AP1G2O75843 785 aa3.88□□□□□ -1.79
SYNE1-201ENST00000341594 ALDH3A1P30838 453 aa3.88□□□□□ -1.79
SYNE1-201ENST00000341594 USP14P54578 494 aa3.88□□□□□ -1.79
SYNE1-201ENST00000341594 MAP3K9P80192 1104 aa3.88□□□□□ -1.79
SYNE1-201ENST00000341594 MTF1Q14872 753 aa3.88□□□□□ -1.79
SYNE1-201ENST00000341594 CWF19L2Q2TBE0 894 aaKnown RBP3.88□□□□□ -1.79
SYNE1-201ENST00000341594 RNF10Q8N5U6 811 aaKnown RBP3.88□□□□□ -1.79
SYNE1-201ENST00000341594 DHX58Q96C10 678 aa3.88□□□□□ -1.79
SYNE1-201ENST00000341594 EIF4ENIF1Q9NRA8 985 aaKnown RBP3.88□□□□□ -1.79
SYNE1-201ENST00000341594 PSMC4P43686 418 aa3.88□□□□□ -1.79
SYNE1-201ENST00000341594 SLC30A10Q6XR72 485 aa3.88□□□□□ -1.79
SYNE1-201ENST00000341594 PGBD1Q96JS3 809 aa3.88□□□□□ -1.79
SYNE1-201ENST00000341594 SMC6Q96SB8 1091 aa3.88□□□□□ -1.79
SYNE1-201ENST00000341594 PEAK1Q9H792 1746 aa3.88□□□□□ -1.79
SYNE1-201ENST00000341594 PTCH1Q13635 1447 aa3.88□□□□□ -1.79
SYNE1-201ENST00000341594 TRPM7Q96QT4 1865 aa3.88□□□□□ -1.79
SYNE1-201ENST00000341594 GIPC2Q8TF65 315 aa3.88□□□□□ -1.79
SYNE1-201ENST00000341594 INTS1Q8N201 2190 aaKnown RBP3.88□□□□□ -1.79
SYNE1-201ENST00000341594 SLC4A1P02730 911 aa3.88□□□□□ -1.79
SYNE1-201ENST00000341594 ACADVLP49748 655 aa3.88□□□□□ -1.79
SYNE1-201ENST00000341594 TRADDQ15628 312 aa3.88□□□□□ -1.79
SYNE1-201ENST00000341594 SULT1C3Q6IMI6 304 aa3.88□□□□□ -1.79
SYNE1-201ENST00000341594 ELAC2Q9BQ52 826 aaKnown RBP3.88□□□□□ -1.79
SYNE1-201ENST00000341594 SPAG7O75391 227 aa3.88□□□□□ -1.79
SYNE1-201ENST00000341594 HOXB6P17509 224 aaKnown RBP3.88□□□□□ -1.79
SYNE1-201ENST00000341594 TBC1D1Q86TI0 1168 aaPredicted RBP3.88□□□□□ -1.79
SYNE1-201ENST00000341594 LMNTD2Q8IXW0 634 aa3.88□□□□□ -1.79
SYNE1-201ENST00000341594 FAM86C1Q9NVL1 165 aa3.88□□□□□ -1.79
SYNE1-201ENST00000341594 V9GY48 417 aaPredicted RBP3.88□□□□□ -1.79
SYNE1-201ENST00000341594 TAL1P17542 331 aaPredicted RBP3.88□□□□□ -1.79
SYNE1-201ENST00000341594 PRUNE1Q86TP1 453 aa3.88□□□□□ -1.79
SYNE1-201ENST00000341594 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP3.88□□□□□ -1.79
SYNE1-201ENST00000341594 U3KPZ7 1027 aaPredicted RBP3.88□□□□□ -1.79
SYNE1-201ENST00000341594 PPP6R3Q5H9R7 873 aaPredicted RBP3.88□□□□□ -1.79
SYNE1-201ENST00000341594 UBLCP1Q8WVY7 318 aaPredicted RBP3.88□□□□□ -1.79
SYNE1-201ENST00000341594 HPS3Q969F9 1004 aa3.88□□□□□ -1.79
SYNE1-201ENST00000341594 CABP5Q9NP86 173 aa3.88□□□□□ -1.79
SYNE1-201ENST00000341594 CSDE1O75534 798 aaKnown RBP3.88□□□□□ -1.79
SYNE1-201ENST00000341594 MSL1Q68DK7 614 aa3.88□□□□□ -1.79
SYNE1-201ENST00000341594 FAM114A2Q9NRY5 505 aa3.88□□□□□ -1.79
SYNE1-201ENST00000341594 CNGA4Q8IV77 575 aa3.88□□□□□ -1.79
SYNE1-201ENST00000341594 SAAL1Q96ER3 474 aa3.88□□□□□ -1.79
SYNE1-201ENST00000341594 TOP1P11387 765 aaKnown RBP3.88□□□□□ -1.79
SYNE1-201ENST00000341594 ATP5DP30049 168 aa3.88□□□□□ -1.79
SYNE1-201ENST00000341594 CYP27A1Q02318 531 aa3.88□□□□□ -1.79
SYNE1-201ENST00000341594 GRM1Q13255 1194 aa3.88□□□□□ -1.79
SYNE1-201ENST00000341594 CENPOQ9BU64 300 aa3.88□□□□□ -1.79
SYNE1-201ENST00000341594 NUP58Q9BVL2 599 aa3.88□□□□□ -1.79
SYNE1-201ENST00000341594 TYRO3Q06418 890 aa3.88□□□□□ -1.79
SYNE1-201ENST00000341594 TMC4Q7Z404 712 aa3.88□□□□□ -1.79
SYNE1-201ENST00000341594 AP1M1Q9BXS5 423 aa3.88□□□□□ -1.79
SYNE1-201ENST00000341594 USP20Q9Y2K6 914 aa3.88□□□□□ -1.79
SYNE1-201ENST00000341594 SERPINB8P50452 374 aa3.88□□□□□ -1.79
SYNE1-201ENST00000341594 VCX3BQ9H321 246 aa3.88□□□□□ -1.79
SYNE1-201ENST00000341594 VCX3AQ9NNX9 186 aa3.88□□□□□ -1.79
SYNE1-201ENST00000341594 OSTNP61366 133 aa3.87□□□□□ -1.79
SYNE1-201ENST00000341594 KRT28Q7Z3Y7 464 aa3.87□□□□□ -1.79
SYNE1-201ENST00000341594 LZTS1Q9Y250 596 aa3.87□□□□□ -1.79
SYNE1-201ENST00000341594 RGPD8O14715 1765 aaPredicted RBP3.87□□□□□ -1.79
SYNE1-201ENST00000341594 NPHP3-ACAD11A0A0J9YXS1 232 aa3.87□□□□□ -1.79
SYNE1-201ENST00000341594 GLRX3O76003 335 aaKnown RBP3.87□□□□□ -1.79
SYNE1-201ENST00000341594 ATP5BP06576 529 aaKnown RBP3.87□□□□□ -1.79
SYNE1-201ENST00000341594 SH2D3CQ8N5H7 860 aa3.87□□□□□ -1.79
SYNE1-201ENST00000341594 MIGA1Q8NAN2 632 aa3.87□□□□□ -1.79
SYNE1-201ENST00000341594 CENPTQ96BT3 561 aa3.87□□□□□ -1.79
SYNE1-201ENST00000341594 NRXN1Q9ULB1 1477 aa3.87□□□□□ -1.79
SYNE1-201ENST00000341594 UBE3BQ7Z3V4 1068 aa3.87□□□□□ -1.79
SYNE1-201ENST00000341594 WASF1Q92558 559 aa3.87□□□□□ -1.79
SYNE1-201ENST00000341594 DPF2Q92785 391 aa3.87□□□□□ -1.79
SYNE1-201ENST00000341594 BICD1Q96G01 975 aa3.87□□□□□ -1.79
SYNE1-201ENST00000341594 MYD88Q99836 296 aa3.87□□□□□ -1.79
SYNE1-201ENST00000341594 CPS1P31327 1500 aa3.87□□□□□ -1.79
SYNE1-201ENST00000341594 NOS1P29475 1434 aa3.87□□□□□ -1.79
SYNE1-201ENST00000341594 BIRC5O15392 142 aa3.87□□□□□ -1.79
SYNE1-201ENST00000341594 PLIN5Q00G26 463 aa3.87□□□□□ -1.79
SYNE1-201ENST00000341594 FAM214AQ32MH5 1076 aa3.87□□□□□ -1.79
SYNE1-201ENST00000341594 SART1O43290 800 aaKnown RBP3.87□□□□□ -1.79
SYNE1-201ENST00000341594 TBC1D8O95759 1140 aa3.87□□□□□ -1.79
SYNE1-201ENST00000341594 UNC13DQ70J99 1090 aa3.87□□□□□ -1.79
SYNE1-201ENST00000341594 KCNB2Q92953 911 aa3.87□□□□□ -1.79
SYNE1-201ENST00000341594 ATP10DQ9P241 1426 aa3.87□□□□□ -1.79
SYNE1-201ENST00000341594 ABCC3O15438 1527 aa3.87□□□□□ -1.79
SYNE1-201ENST00000341594 KRT83P78385 493 aa3.87□□□□□ -1.79
SYNE1-201ENST00000341594 SLC12A1Q13621 1099 aa3.87□□□□□ -1.79
SYNE1-201ENST00000341594 NYAP1Q6ZVC0 841 aa3.87□□□□□ -1.79
SYNE1-201ENST00000341594 ARL8AQ96BM9 186 aa3.87□□□□□ -1.79
SYNE1-201ENST00000341594 GBP5Q96PP8 586 aa3.87□□□□□ -1.79
SYNE1-201ENST00000341594 SLC26A6Q9BXS9 759 aa3.87□□□□□ -1.79
SYNE1-201ENST00000341594 UBE2Q2LH0YL09 131 aa3.87□□□□□ -1.79
SYNE1-201ENST00000341594 NUP88Q99567 741 aaPredicted RBP3.87□□□□□ -1.79
SYNE1-201ENST00000341594 RCOR1Q9UKL0 485 aa3.87□□□□□ -1.79
SYNE1-201ENST00000341594 DSEQ9UL01 958 aa3.87□□□□□ -1.79
SYNE1-201ENST00000341594 THRAP3Q9Y2W1 955 aaKnown RBP3.87□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms