RNA–Protein interactions for RNA: ENST00000338585.6

MCF2-201, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,826 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-201ENST00000338585 RLFQ13129 1914 aa4.69□□□□□ -1.66
MCF2-201ENST00000338585 C19orf81C9J6K1 198 aa4.69□□□□□ -1.66
MCF2-201ENST00000338585 VWA5AO00534 786 aa4.69□□□□□ -1.66
MCF2-201ENST00000338585 IRF6O14896 467 aa4.69□□□□□ -1.66
MCF2-201ENST00000338585 ALAS1P13196 640 aa4.69□□□□□ -1.66
MCF2-201ENST00000338585 LONP1P36776 959 aaKnown RBP4.69□□□□□ -1.66
MCF2-201ENST00000338585 PRPHP41219 470 aa4.69□□□□□ -1.66
MCF2-201ENST00000338585 TECP42680 631 aa4.69□□□□□ -1.66
MCF2-201ENST00000338585 IREB2P48200 963 aaKnown RBP4.69□□□□□ -1.66
MCF2-201ENST00000338585 MDM2Q00987 491 aaPredicted RBP4.69□□□□□ -1.66
MCF2-201ENST00000338585 AP3B2Q13367 1082 aa4.69□□□□□ -1.66
MCF2-201ENST00000338585 ZRSR1Q15695 479 aaKnown RBP4.69□□□□□ -1.66
MCF2-201ENST00000338585 E2F4Q16254 413 aa4.69□□□□□ -1.66
MCF2-201ENST00000338585 CALCRLQ16602 461 aa4.69□□□□□ -1.66
MCF2-201ENST00000338585 TREML2Q5T2D2 321 aa4.69□□□□□ -1.66
MCF2-201ENST00000338585 LRRC15Q8TF66 581 aa4.69□□□□□ -1.66
MCF2-201ENST00000338585 CLEC4DQ8WXI8 215 aa4.69□□□□□ -1.66
MCF2-201ENST00000338585 STAMQ92783 540 aa4.69□□□□□ -1.66
MCF2-201ENST00000338585 HAS1Q92839 578 aa4.69□□□□□ -1.66
MCF2-201ENST00000338585 TIGD1Q96MW7 591 aa4.69□□□□□ -1.66
MCF2-201ENST00000338585 MTMR9Q96QG7 549 aa4.69□□□□□ -1.66
MCF2-201ENST00000338585 GLT8D2Q9H1C3 349 aa4.69□□□□□ -1.66
MCF2-201ENST00000338585 RRAGCQ9HB90 399 aa4.69□□□□□ -1.66
MCF2-201ENST00000338585 COL20A1Q9P218 1284 aa4.69□□□□□ -1.66
MCF2-201ENST00000338585 KIAA1468Q9P260 1216 aa4.69□□□□□ -1.66
MCF2-201ENST00000338585 DDX25Q9UHL0 483 aaKnown RBP4.69□□□□□ -1.66
MCF2-201ENST00000338585 RIPK3Q9Y572 518 aa4.69□□□□□ -1.66
MCF2-201ENST00000338585 ABCB11O95342 1321 aa4.69□□□□□ -1.66
MCF2-201ENST00000338585 SPDYE3A6NKU9 549 aa4.68□□□□□ -1.66
MCF2-201ENST00000338585 FAM86B1E9PN63 330 aa4.68□□□□□ -1.66
MCF2-201ENST00000338585 PIK3CDO00329 1044 aa4.68□□□□□ -1.66
MCF2-201ENST00000338585 LAD1O00515 517 aa4.68□□□□□ -1.66
MCF2-201ENST00000338585 FAM86B2P0C5J1 330 aa4.68□□□□□ -1.66
MCF2-201ENST00000338585 NF2P35240 595 aa4.68□□□□□ -1.66
MCF2-201ENST00000338585 SREBF1P36956 1147 aa4.68□□□□□ -1.66
MCF2-201ENST00000338585 AFMP43652 599 aa4.68□□□□□ -1.66
MCF2-201ENST00000338585 DPCR1Q3MIW9 517 aa4.68□□□□□ -1.66
MCF2-201ENST00000338585 PPP4R3AQ6IN85 833 aa4.68□□□□□ -1.66
MCF2-201ENST00000338585 POTEEQ6S8J3 1075 aa4.68□□□□□ -1.66
MCF2-201ENST00000338585 SLC30A10Q6XR72 485 aa4.68□□□□□ -1.66
MCF2-201ENST00000338585 LUZP1Q86V48 1076 aa4.68□□□□□ -1.66
MCF2-201ENST00000338585 PNMA8AQ86V59 439 aaPredicted RBP4.68□□□□□ -1.66
MCF2-201ENST00000338585 ANKRD13AQ8IZ07 590 aa4.68□□□□□ -1.66
MCF2-201ENST00000338585 REPS2Q8NFH8 660 aa4.68□□□□□ -1.66
MCF2-201ENST00000338585 CYP2W1Q8TAV3 490 aa4.68□□□□□ -1.66
MCF2-201ENST00000338585 ZNF526Q8TF50 670 aaPredicted RBP4.68□□□□□ -1.66
MCF2-201ENST00000338585 PURBQ96QR8 312 aaKnown RBP4.68□□□□□ -1.66
MCF2-201ENST00000338585 MTRQ99707 1265 aa4.68□□□□□ -1.66
MCF2-201ENST00000338585 MMTAG2Q9BU76 263 aaKnown RBP4.68□□□□□ -1.66
MCF2-201ENST00000338585 CBX8Q9HC52 389 aa4.68□□□□□ -1.66
MCF2-201ENST00000338585 TMOD4Q9NZQ9 345 aa4.68□□□□□ -1.66
MCF2-201ENST00000338585 MRPL11Q9Y3B7 192 aaKnown RBP4.68□□□□□ -1.66
MCF2-201ENST00000338585 PCDHA5Q9Y5H7 936 aa4.68□□□□□ -1.66
MCF2-201ENST00000338585 PTPRFP10586 1907 aa4.68□□□□□ -1.66
MCF2-201ENST00000338585 SPDYE16A6NNV3 312 aaPredicted RBP4.68□□□□□ -1.66
MCF2-201ENST00000338585 GCOM1H8Y6P7 765 aaPredicted RBP4.68□□□□□ -1.66
MCF2-201ENST00000338585 ZBED4O75132 1171 aa4.68□□□□□ -1.66
MCF2-201ENST00000338585 FOSP01100 380 aaPredicted RBP4.68□□□□□ -1.66
MCF2-201ENST00000338585 POLR2MP0CAP2 368 aa4.68□□□□□ -1.66
MCF2-201ENST00000338585 COG2Q14746 738 aa4.68□□□□□ -1.66
MCF2-201ENST00000338585 POSTNQ15063 836 aa4.68□□□□□ -1.66
MCF2-201ENST00000338585 STX1AQ16623 288 aa4.68□□□□□ -1.66
MCF2-201ENST00000338585 PRR16Q569H4 304 aa4.68□□□□□ -1.66
MCF2-201ENST00000338585 SH3D19Q5HYK7 790 aa4.68□□□□□ -1.66
MCF2-201ENST00000338585 PDXDC2PQ6P474 469 aa4.68□□□□□ -1.66
MCF2-201ENST00000338585 GADL1Q6ZQY3 521 aa4.68□□□□□ -1.66
MCF2-201ENST00000338585 CATSPERGQ6ZRH7 1159 aa4.68□□□□□ -1.66
MCF2-201ENST00000338585 LENG9Q96B70 501 aa4.68□□□□□ -1.66
MCF2-201ENST00000338585 PAGE5Q96GU1 130 aa4.68□□□□□ -1.66
MCF2-201ENST00000338585 NUDT12Q9BQG2 462 aa4.68□□□□□ -1.66
MCF2-201ENST00000338585 TTC12Q9H892 705 aaPredicted RBP4.68□□□□□ -1.66
MCF2-201ENST00000338585 NMRK2Q9NPI5 230 aa4.68□□□□□ -1.66
MCF2-201ENST00000338585 COL11A1P12107 1806 aaPredicted RBP4.68□□□□□ -1.66
MCF2-201ENST00000338585 SPDYE5A6NIY4 337 aa4.68□□□□□ -1.66
MCF2-201ENST00000338585 SOCS7O14512 581 aa4.68□□□□□ -1.66
MCF2-201ENST00000338585 AP5Z1O43299 807 aa4.68□□□□□ -1.66
MCF2-201ENST00000338585 SLFN14P0C7P3 912 aa4.68□□□□□ -1.66
MCF2-201ENST00000338585 GCFC2P16383 781 aaKnown RBP4.68□□□□□ -1.66
MCF2-201ENST00000338585 BMP6P22004 513 aa4.68□□□□□ -1.66
MCF2-201ENST00000338585 GJA5P36382 358 aa4.68□□□□□ -1.66
MCF2-201ENST00000338585 STAT3P40763 770 aa4.68□□□□□ -1.66
MCF2-201ENST00000338585 UBA7P41226 1012 aa4.68□□□□□ -1.66
MCF2-201ENST00000338585 ZNF165P49910 485 aa4.68□□□□□ -1.66
MCF2-201ENST00000338585 HSD17B4P51659 736 aa4.68□□□□□ -1.66
MCF2-201ENST00000338585 USP11P51784 963 aa4.68□□□□□ -1.66
MCF2-201ENST00000338585 PPATQ06203 517 aa4.68□□□□□ -1.66
MCF2-201ENST00000338585 TRAF1Q13077 416 aa4.68□□□□□ -1.66
MCF2-201ENST00000338585 ORC2Q13416 577 aaPredicted RBP4.68□□□□□ -1.66
MCF2-201ENST00000338585 TMEM132BQ14DG7 1078 aa4.68□□□□□ -1.66
MCF2-201ENST00000338585 NAALADL2Q58DX5 795 aa4.68□□□□□ -1.66
MCF2-201ENST00000338585 SNRNP48Q6IEG0 339 aaKnown RBP4.68□□□□□ -1.66
MCF2-201ENST00000338585 SH3RF1Q7Z6J0 888 aa4.68□□□□□ -1.66
MCF2-201ENST00000338585 ERO1BQ86YB8 467 aa4.68□□□□□ -1.66
MCF2-201ENST00000338585 IGSF22Q8N9C0 903 aa4.68□□□□□ -1.66
MCF2-201ENST00000338585 RASSF8Q8NHQ8 419 aa4.68□□□□□ -1.66
MCF2-201ENST00000338585 IL31RAQ8NI17 732 aa4.68□□□□□ -1.66
MCF2-201ENST00000338585 RBM46Q8TBY0 533 aaKnown RBP4.68□□□□□ -1.66
MCF2-201ENST00000338585 FAM200AQ8TCP9 573 aa4.68□□□□□ -1.66
MCF2-201ENST00000338585 OPTNQ96CV9 577 aa4.68□□□□□ -1.66
MCF2-201ENST00000338585 MBOAT7Q96N66 472 aa4.68□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 79.3 ms