RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 NCAPH2Q6IBW4 605 aa11.21□□□□□ -0.61
CCDC88A-202ENST00000336838 NLRX1Q86UT6 975 aa11.21□□□□□ -0.61
CCDC88A-202ENST00000336838 NCAPGQ9BPX3 1015 aa11.21□□□□□ -0.61
CCDC88A-202ENST00000336838 EDEM3Q9BZQ6 932 aa11.21□□□□□ -0.61
CCDC88A-202ENST00000336838 PICK1Q9NRD5 415 aa11.21□□□□□ -0.61
CCDC88A-202ENST00000336838 ADGRB2O60241 1585 aa11.21□□□□□ -0.61
CCDC88A-202ENST00000336838 PALLDQ8WX93 1383 aa11.21□□□□□ -0.61
CCDC88A-202ENST00000336838 ZBTB17Q13105 803 aa11.21□□□□□ -0.61
CCDC88A-202ENST00000336838 ADCK5Q3MIX3 580 aa11.21□□□□□ -0.61
CCDC88A-202ENST00000336838 PARD6BQ9BYG5 372 aa11.21□□□□□ -0.61
CCDC88A-202ENST00000336838 KIDINS220Q9ULH0 1771 aa11.21□□□□□ -0.61
CCDC88A-202ENST00000336838 ZWINTO95229 277 aa11.21□□□□□ -0.62
CCDC88A-202ENST00000336838 STAG1Q8WVM7 1258 aa11.21□□□□□ -0.62
CCDC88A-202ENST00000336838 A0A1W2PQC6 194 aa11.21□□□□□ -0.62
CCDC88A-202ENST00000336838 BTBD18B2RXH4 712 aa11.21□□□□□ -0.62
CCDC88A-202ENST00000336838 PFDN6O15212 129 aa11.21□□□□□ -0.62
CCDC88A-202ENST00000336838 DNAJC8O75937 253 aaPredicted RBP11.21□□□□□ -0.62
CCDC88A-202ENST00000336838 AFPP02771 609 aaKnown RBP11.21□□□□□ -0.62
CCDC88A-202ENST00000336838 MFAP3P55082 362 aa11.21□□□□□ -0.62
CCDC88A-202ENST00000336838 RBL2Q08999 1139 aa11.21□□□□□ -0.62
CCDC88A-202ENST00000336838 GNPTABQ3T906 1256 aa11.21□□□□□ -0.62
CCDC88A-202ENST00000336838 U2AF1L4Q8WU68 220 aaKnown RBP11.21□□□□□ -0.62
CCDC88A-202ENST00000336838 PLIN2Q99541 437 aa11.21□□□□□ -0.62
CCDC88A-202ENST00000336838 GPCPD1Q9NPB8 672 aa11.21□□□□□ -0.62
CCDC88A-202ENST00000336838 SKIP12755 728 aa11.21□□□□□ -0.62
CCDC88A-202ENST00000336838 NEK9Q8TD19 979 aa11.21□□□□□ -0.62
CCDC88A-202ENST00000336838 CARD10Q9BWT7 1032 aa11.21□□□□□ -0.62
CCDC88A-202ENST00000336838 NRXN1Q9ULB1 1477 aa11.21□□□□□ -0.62
CCDC88A-202ENST00000336838 MKRN3Q13064 507 aaKnown RBP11.21□□□□□ -0.62
CCDC88A-202ENST00000336838 UAP1Q16222 522 aaPredicted RBP11.21□□□□□ -0.62
CCDC88A-202ENST00000336838 AP1ARQ63HQ0 302 aa11.21□□□□□ -0.62
CCDC88A-202ENST00000336838 BLZF1Q9H2G9 400 aa11.21□□□□□ -0.62
CCDC88A-202ENST00000336838 MRPL47Q9HD33 250 aaKnown RBP11.21□□□□□ -0.62
CCDC88A-202ENST00000336838 KLRF2D3W0D1 207 aa11.2□□□□□ -0.62
CCDC88A-202ENST00000336838 NSFP46459 744 aaKnown RBP11.2□□□□□ -0.62
CCDC88A-202ENST00000336838 NNTQ13423 1086 aa11.2□□□□□ -0.62
CCDC88A-202ENST00000336838 ZKSCAN8Q15776 578 aaPredicted RBP11.2□□□□□ -0.62
CCDC88A-202ENST00000336838 MAP7D3Q8IWC1 876 aa11.2□□□□□ -0.62
CCDC88A-202ENST00000336838 TTC25Q96NG3 672 aa11.2□□□□□ -0.62
CCDC88A-202ENST00000336838 DLG5Q8TDM6 1919 aa11.2□□□□□ -0.62
CCDC88A-202ENST00000336838 GUCY2FP51841 1108 aa11.2□□□□□ -0.62
CCDC88A-202ENST00000336838 HACE1Q8IYU2 909 aa11.2□□□□□ -0.62
CCDC88A-202ENST00000336838 JDP2Q8WYK2 163 aa11.2□□□□□ -0.62
CCDC88A-202ENST00000336838 NHEJ1Q9H9Q4 299 aaPredicted RBP11.2□□□□□ -0.62
CCDC88A-202ENST00000336838 CCNE1P24864 410 aa11.2□□□□□ -0.62
CCDC88A-202ENST00000336838 PSMC2P35998 433 aaKnown RBP11.2□□□□□ -0.62
CCDC88A-202ENST00000336838 PPCSQ9HAB8 311 aa11.2□□□□□ -0.62
CCDC88A-202ENST00000336838 TADA2BQ86TJ2 420 aa11.2□□□□□ -0.62
CCDC88A-202ENST00000336838 PALM2Q8IXS6 379 aa11.2□□□□□ -0.62
CCDC88A-202ENST00000336838 SRRM1Q8IYB3 904 aaKnown RBP11.2□□□□□ -0.62
CCDC88A-202ENST00000336838 MYH8P13535 1937 aa11.2□□□□□ -0.62
CCDC88A-202ENST00000336838 GCKP35557 465 aa11.2□□□□□ -0.62
CCDC88A-202ENST00000336838 GARSP41250 739 aaKnown RBP11.2□□□□□ -0.62
CCDC88A-202ENST00000336838 KPNA2P52292 529 aaKnown RBP11.2□□□□□ -0.62
CCDC88A-202ENST00000336838 ALX1Q15699 326 aa11.2□□□□□ -0.62
CCDC88A-202ENST00000336838 KLHDC4Q8TBB5 520 aa11.2□□□□□ -0.62
CCDC88A-202ENST00000336838 ZNF622Q969S3 477 aaKnown RBP eCLIP11.2□□□□□ -0.628e-7■■□□□ 13.1
CCDC88A-202ENST00000336838 GOLGA8CPA6NN73 597 aa11.2□□□□□ -0.62
CCDC88A-202ENST00000336838 HEXIM1O94992 359 aaKnown RBP11.2□□□□□ -0.62
CCDC88A-202ENST00000336838 GGPS1O95749 300 aa11.2□□□□□ -0.62
CCDC88A-202ENST00000336838 LEMD3Q9Y2U8 911 aa11.2□□□□□ -0.62
CCDC88A-202ENST00000336838 ARHGAP27Q6ZUM4 889 aa11.2□□□□□ -0.62
CCDC88A-202ENST00000336838 RPUSD2Q8IZ73 545 aaKnown RBP11.2□□□□□ -0.62
CCDC88A-202ENST00000336838 WDR11Q9BZH6 1224 aa11.2□□□□□ -0.62
CCDC88A-202ENST00000336838 ANGPTL2Q9UKU9 493 aa11.2□□□□□ -0.62
CCDC88A-202ENST00000336838 ATF7P17544 494 aaPredicted RBP11.19□□□□□ -0.62
CCDC88A-202ENST00000336838 RPS8P62241 208 aaKnown RBP11.19□□□□□ -0.62
CCDC88A-202ENST00000336838 LRCH2Q5VUJ6 765 aa11.19□□□□□ -0.62
CCDC88A-202ENST00000336838 ZNF594Q96JF6 807 aaPredicted RBP11.19□□□□□ -0.62
CCDC88A-202ENST00000336838 VPS37BQ9H9H4 285 aa11.19□□□□□ -0.62
CCDC88A-202ENST00000336838 LGALS16A8MUM7 142 aa11.19□□□□□ -0.62
CCDC88A-202ENST00000336838 TOM1O60784 492 aa11.19□□□□□ -0.62
CCDC88A-202ENST00000336838 CCT5P48643 541 aa11.19□□□□□ -0.62
CCDC88A-202ENST00000336838 PODNQ7Z5L7 613 aa11.19□□□□□ -0.62
CCDC88A-202ENST00000336838 CCDC117Q8IWD4 279 aaPredicted RBP11.19□□□□□ -0.62
CCDC88A-202ENST00000336838 HELBQ8NG08 1087 aaPredicted RBP11.19□□□□□ -0.62
CCDC88A-202ENST00000336838 MICAL1Q8TDZ2 1067 aa11.19□□□□□ -0.62
CCDC88A-202ENST00000336838 MYOM1P52179 1685 aa11.19□□□□□ -0.62
CCDC88A-202ENST00000336838 CFAP73A6NFT4 308 aa11.19□□□□□ -0.62
CCDC88A-202ENST00000336838 TTI1O43156 1089 aa11.19□□□□□ -0.62
CCDC88A-202ENST00000336838 JPH2Q9BR39 696 aaPredicted RBP11.19□□□□□ -0.62
CCDC88A-202ENST00000336838 TRIM31Q9BZY9 425 aa11.19□□□□□ -0.62
CCDC88A-202ENST00000336838 TRIM4Q9C037 500 aa11.19□□□□□ -0.62
CCDC88A-202ENST00000336838 DISC1Q9NRI5 854 aa11.19□□□□□ -0.62
CCDC88A-202ENST00000336838 ECEL1O95672 775 aa11.19□□□□□ -0.62
CCDC88A-202ENST00000336838 RPAINQ86UA6 219 aa11.19□□□□□ -0.62
CCDC88A-202ENST00000336838 SIRT2Q8IXJ6 389 aa11.19□□□□□ -0.62
CCDC88A-202ENST00000336838 NSMCE1Q8WV22 266 aa11.19□□□□□ -0.62
CCDC88A-202ENST00000336838 BRIP1Q9BX63 1249 aa11.19□□□□□ -0.62
CCDC88A-202ENST00000336838 STMN1P16949 149 aa11.19□□□□□ -0.62
CCDC88A-202ENST00000336838 AZI2Q9H6S1 392 aa11.19□□□□□ -0.62
CCDC88A-202ENST00000336838 MID2Q9UJV3 735 aa11.19□□□□□ -0.62
CCDC88A-202ENST00000336838 ADAMTS2O95450 1211 aa11.19□□□□□ -0.62
CCDC88A-202ENST00000336838 ADD1P35611 737 aaKnown RBP11.19□□□□□ -0.62
CCDC88A-202ENST00000336838 IPO11Q9UI26 975 aaKnown RBP11.19□□□□□ -0.62
CCDC88A-202ENST00000336838 ITIH6Q6UXX5 1313 aa11.19□□□□□ -0.62
CCDC88A-202ENST00000336838 TTLL1O95922 423 aa11.19□□□□□ -0.62
CCDC88A-202ENST00000336838 CYP2E1P05181 493 aaPredicted RBP11.19□□□□□ -0.62
CCDC88A-202ENST00000336838 PTK2Q05397 1052 aa11.19□□□□□ -0.62
CCDC88A-202ENST00000336838 ABHD10Q9NUJ1 306 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms