RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 CHST13Q8NET6 341 aa16.92■□□□□ 0.3
CCDC88C-202ENST00000334448 SYTL5Q8TDW5 730 aaPredicted RBP16.92■□□□□ 0.3
CCDC88C-202ENST00000334448 TBC1D5Q92609 795 aa16.92■□□□□ 0.3
CCDC88C-202ENST00000334448 TRERF1Q96PN7 1200 aa16.92■□□□□ 0.3
CCDC88C-202ENST00000334448 PYM1Q9BRP8 204 aaKnown RBP16.92■□□□□ 0.3
CCDC88C-202ENST00000334448 KCNMB3Q9NPA1 279 aa16.92■□□□□ 0.3
CCDC88C-202ENST00000334448 KCNH3Q9ULD8 1083 aa16.92■□□□□ 0.3
CCDC88C-202ENST00000334448 SLC37A4O43826 429 aa16.91■□□□□ 0.3
CCDC88C-202ENST00000334448 OSBPP22059 807 aa16.91■□□□□ 0.3
CCDC88C-202ENST00000334448 STAT3P40763 770 aa16.91■□□□□ 0.3
CCDC88C-202ENST00000334448 SYKP43405 635 aa16.91■□□□□ 0.3
CCDC88C-202ENST00000334448 CALCRLQ16602 461 aa16.91■□□□□ 0.3
CCDC88C-202ENST00000334448 MUM1L1Q5H9M0 696 aa16.91■□□□□ 0.3
CCDC88C-202ENST00000334448 SAMD1Q6SPF0 538 aaPredicted RBP16.91■□□□□ 0.3
CCDC88C-202ENST00000334448 ANKRD23Q86SG2 305 aa16.91■□□□□ 0.3
CCDC88C-202ENST00000334448 POTEDQ86YR6 584 aa16.91■□□□□ 0.3
CCDC88C-202ENST00000334448 RIOX2Q8IUF8 465 aa16.91■□□□□ 0.3
CCDC88C-202ENST00000334448 IGSF22Q8N9C0 903 aa16.91■□□□□ 0.3
CCDC88C-202ENST00000334448 ZNF526Q8TF50 670 aaPredicted RBP16.91■□□□□ 0.3
CCDC88C-202ENST00000334448 LENG9Q96B70 501 aa16.91■□□□□ 0.3
CCDC88C-202ENST00000334448 GZF1Q9H116 711 aaPredicted RBP16.91■□□□□ 0.3
CCDC88C-202ENST00000334448 DDX25Q9UHL0 483 aaKnown RBP16.91■□□□□ 0.3
CCDC88C-202ENST00000334448 PNMA3Q9UL41 463 aa16.91■□□□□ 0.3
CCDC88C-202ENST00000334448 TESPA1A2RU30 521 aaPredicted RBP16.9■□□□□ 0.3
CCDC88C-202ENST00000334448 VWA3AA6NCI4 1184 aa16.9■□□□□ 0.3
CCDC88C-202ENST00000334448 KIF3CO14782 793 aa16.9■□□□□ 0.3
CCDC88C-202ENST00000334448 ZNF202O95125 648 aa16.9■□□□□ 0.3
CCDC88C-202ENST00000334448 GSE1Q14687 1217 aa16.9■□□□□ 0.3
CCDC88C-202ENST00000334448 XRRA1Q6P2D8 792 aa16.9■□□□□ 0.3
CCDC88C-202ENST00000334448 CCSER1Q9C0I3 900 aa16.9■□□□□ 0.3
CCDC88C-202ENST00000334448 ACAD9Q9H845 621 aa16.9■□□□□ 0.3
CCDC88C-202ENST00000334448 FBXO40Q9UH90 709 aa16.9■□□□□ 0.3
CCDC88C-202ENST00000334448 USP25Q9UHP3 1055 aa16.9■□□□□ 0.3
CCDC88C-202ENST00000334448 RIPK3Q9Y572 518 aa16.9■□□□□ 0.3
CCDC88C-202ENST00000334448 TRPM7Q96QT4 1865 aa16.9■□□□□ 0.3
CCDC88C-202ENST00000334448 IGLV3-22A0A075B6J6 115 aa16.89■□□□□ 0.29
CCDC88C-202ENST00000334448 SLC26A4O43511 780 aa16.89■□□□□ 0.29
CCDC88C-202ENST00000334448 CNMDO75829 334 aa16.89■□□□□ 0.29
CCDC88C-202ENST00000334448 RPS6P62753 249 aaKnown RBP16.89■□□□□ 0.29
CCDC88C-202ENST00000334448 PDIA5Q14554 519 aa16.89■□□□□ 0.29
CCDC88C-202ENST00000334448 LRSAM1Q6UWE0 723 aa16.89■□□□□ 0.29
CCDC88C-202ENST00000334448 NIPA1Q7RTP0 329 aa16.89■□□□□ 0.29
CCDC88C-202ENST00000334448 ETNPPLQ8TBG4 499 aa16.89■□□□□ 0.29
CCDC88C-202ENST00000334448 BRI3BPQ8WY22 251 aa16.89■□□□□ 0.29
CCDC88C-202ENST00000334448 SYMPKQ92797 1274 aaKnown RBP16.89■□□□□ 0.29
CCDC88C-202ENST00000334448 HAS1Q92839 578 aa16.89■□□□□ 0.29
CCDC88C-202ENST00000334448 SPATC1LQ9H0A9 340 aa16.89■□□□□ 0.29
CCDC88C-202ENST00000334448 GPBP1L1Q9HC44 474 aaPredicted RBP16.89■□□□□ 0.29
CCDC88C-202ENST00000334448 ZCCHC17Q9NP64 241 aaKnown RBP16.89■□□□□ 0.29
CCDC88C-202ENST00000334448 BTBD7Q9P203 1132 aa16.89■□□□□ 0.29
CCDC88C-202ENST00000334448 COL20A1Q9P218 1284 aa16.89■□□□□ 0.29
CCDC88C-202ENST00000334448 SYCE3A1L190 88 aa16.88■□□□□ 0.29
CCDC88C-202ENST00000334448 FSD2A1L4K1 749 aa16.88■□□□□ 0.29
CCDC88C-202ENST00000334448 SLC25A27O95847 323 aa16.88■□□□□ 0.29
CCDC88C-202ENST00000334448 BCRP11274 1271 aa16.88■□□□□ 0.29
CCDC88C-202ENST00000334448 HUNKP57058 714 aa16.88■□□□□ 0.29
CCDC88C-202ENST00000334448 SLC30A10Q6XR72 485 aa16.88■□□□□ 0.29
CCDC88C-202ENST00000334448 RNF207Q6ZRF8 634 aa16.88■□□□□ 0.29
CCDC88C-202ENST00000334448 USP49Q70CQ1 688 aa16.88■□□□□ 0.29
CCDC88C-202ENST00000334448 FCHSD1Q86WN1 690 aa16.88■□□□□ 0.29
CCDC88C-202ENST00000334448 SLFN12Q8IYM2 578 aa16.88■□□□□ 0.29
CCDC88C-202ENST00000334448 FAM20AQ96MK3 541 aa16.88■□□□□ 0.29
CCDC88C-202ENST00000334448 FUCA2Q9BTY2 467 aa16.88■□□□□ 0.29
CCDC88C-202ENST00000334448 RAB34Q9BZG1 259 aa16.88■□□□□ 0.29
CCDC88C-202ENST00000334448 TNMDQ9H2S6 317 aa16.88■□□□□ 0.29
CCDC88C-202ENST00000334448 SMCHD1A6NHR9 2005 aa16.87■□□□□ 0.29
CCDC88C-202ENST00000334448 CCL15-CCL14A0A0B4J2E2 113 aa16.87■□□□□ 0.29
CCDC88C-202ENST00000334448 FAM86B1E9PN63 330 aa16.87■□□□□ 0.29
CCDC88C-202ENST00000334448 FAM86B2P0C5J1 330 aa16.87■□□□□ 0.29
CCDC88C-202ENST00000334448 TXLNAP40222 546 aa16.87■□□□□ 0.29
CCDC88C-202ENST00000334448 SETQ01105 290 aaPredicted RBP16.87■□□□□ 0.29
CCDC88C-202ENST00000334448 E2F4Q16254 413 aa16.87■□□□□ 0.29
CCDC88C-202ENST00000334448 CCL15Q16663 113 aa16.87■□□□□ 0.29
CCDC88C-202ENST00000334448 TMEM266Q2M3C6 531 aa16.87■□□□□ 0.29
CCDC88C-202ENST00000334448 PCNX4Q63HM2 1172 aa16.87■□□□□ 0.29
CCDC88C-202ENST00000334448 SAPCD2Q86UD0 394 aa16.87■□□□□ 0.29
CCDC88C-202ENST00000334448 RASAL3Q86YV0 1011 aa16.87■□□□□ 0.29
CCDC88C-202ENST00000334448 SMC1BQ8NDV3 1235 aa16.87■□□□□ 0.29
CCDC88C-202ENST00000334448 SHCBP1Q8NEM2 672 aa16.87■□□□□ 0.29
CCDC88C-202ENST00000334448 EPSTI1Q96J88 318 aa16.87■□□□□ 0.29
CCDC88C-202ENST00000334448 HHIPL1Q96JK4 782 aa16.87■□□□□ 0.29
CCDC88C-202ENST00000334448 A1CFQ9NQ94 594 aaKnown RBP16.87■□□□□ 0.29
CCDC88C-202ENST00000334448 HOMER2Q9NSB8 354 aa16.87■□□□□ 0.29
CCDC88C-202ENST00000334448 CYP39A1Q9NYL5 469 aa16.87■□□□□ 0.29
CCDC88C-202ENST00000334448 RBPJLQ9UBG7 517 aa16.87■□□□□ 0.29
CCDC88C-202ENST00000334448 MYH7BA7E2Y1 1941 aa16.87■□□□□ 0.29
CCDC88C-202ENST00000334448 PFASO15067 1338 aa16.87■□□□□ 0.29
CCDC88C-202ENST00000334448 COL11A1P12107 1806 aaPredicted RBP16.86■□□□□ 0.29
CCDC88C-202ENST00000334448 BTBD19C9JJ37 291 aa16.86■□□□□ 0.29
CCDC88C-202ENST00000334448 MEIS1O00470 390 aa16.86■□□□□ 0.29
CCDC88C-202ENST00000334448 ACTN4O43707 911 aaKnown RBP16.86■□□□□ 0.29
CCDC88C-202ENST00000334448 CEP55Q53EZ4 464 aa16.86■□□□□ 0.29
CCDC88C-202ENST00000334448 KANK3Q6NY19 840 aa16.86■□□□□ 0.29
CCDC88C-202ENST00000334448 KRBA2Q6ZNG9 492 aa16.86■□□□□ 0.29
CCDC88C-202ENST00000334448 TLL2Q9Y6L7 1015 aa16.86■□□□□ 0.29
CCDC88C-202ENST00000334448 A0A087X0B3 334 aa16.85■□□□□ 0.29
CCDC88C-202ENST00000334448 SLFN14P0C7P3 912 aa16.85■□□□□ 0.29
CCDC88C-202ENST00000334448 GCLCP48506 637 aaPredicted RBP16.85■□□□□ 0.29
CCDC88C-202ENST00000334448 BAATQ14032 418 aaPredicted RBP16.85■□□□□ 0.29
CCDC88C-202ENST00000334448 LONRF3Q496Y0 759 aa16.85■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms