RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 RMND1Q9NWS8 449 aa14.88□□□□□ -0.03
CCDC88C-201ENST00000331194 SOS2Q07890 1332 aaPredicted RBP14.88□□□□□ -0.03
CCDC88C-201ENST00000331194 SLC1A4P43007 532 aa14.88□□□□□ -0.03
CCDC88C-201ENST00000331194 HLTFQ14527 1009 aaKnown RBP eCLIP14.88□□□□□ -0.03
CCDC88C-201ENST00000331194 THAP9Q9H5L6 903 aa14.88□□□□□ -0.03
CCDC88C-201ENST00000331194 RIC1Q4ADV7 1423 aa14.88□□□□□ -0.03
CCDC88C-201ENST00000331194 GMNCA6NCL1 334 aa14.88□□□□□ -0.03
CCDC88C-201ENST00000331194 SCTRP47872 440 aa14.88□□□□□ -0.03
CCDC88C-201ENST00000331194 EVX2Q03828 476 aa14.88□□□□□ -0.03
CCDC88C-201ENST00000331194 RRAGAQ7L523 313 aa14.88□□□□□ -0.03
CCDC88C-201ENST00000331194 TEX11Q8IYF3 940 aa14.88□□□□□ -0.03
CCDC88C-201ENST00000331194 SEC16BQ96JE7 1060 aa14.88□□□□□ -0.03
CCDC88C-201ENST00000331194 A6NNZ2 444 aa14.87□□□□□ -0.03
CCDC88C-201ENST00000331194 PSMA7O14818 248 aa14.87□□□□□ -0.03
CCDC88C-201ENST00000331194 ITIH3Q06033 890 aa14.87□□□□□ -0.03
CCDC88C-201ENST00000331194 STK4Q13043 487 aa14.87□□□□□ -0.03
CCDC88C-201ENST00000331194 ALX1Q15699 326 aa14.87□□□□□ -0.03
CCDC88C-201ENST00000331194 ENOX2Q16206 610 aaKnown RBP14.87□□□□□ -0.03
CCDC88C-201ENST00000331194 TUBB8Q3ZCM7 444 aa14.87□□□□□ -0.03
CCDC88C-201ENST00000331194 ODF2Q5BJF6 829 aa14.87□□□□□ -0.03
CCDC88C-201ENST00000331194 ENAHQ8N8S7 591 aaPredicted RBP14.87□□□□□ -0.03
CCDC88C-201ENST00000331194 DCAF5Q96JK2 942 aa14.87□□□□□ -0.03
CCDC88C-201ENST00000331194 TSGA10Q9BZW7 698 aa14.87□□□□□ -0.03
CCDC88C-201ENST00000331194 LRRC53A6NM62 1247 aa14.87□□□□□ -0.03
CCDC88C-201ENST00000331194 RAD51CO43502 376 aa14.87□□□□□ -0.03
CCDC88C-201ENST00000331194 CCNHP51946 323 aaPredicted RBP14.87□□□□□ -0.03
CCDC88C-201ENST00000331194 PAK2Q13177 524 aa14.87□□□□□ -0.03
CCDC88C-201ENST00000331194 THOC1Q96FV9 657 aaKnown RBP14.87□□□□□ -0.03
CCDC88C-201ENST00000331194 ALS2CR12Q96Q35 445 aa14.87□□□□□ -0.03
CCDC88C-201ENST00000331194 BAIAP2L1Q9UHR4 511 aa14.87□□□□□ -0.03
CCDC88C-201ENST00000331194 IQSEC3Q9UPP2 1182 aaPredicted RBP14.87□□□□□ -0.03
CCDC88C-201ENST00000331194 PRLRP16471 622 aa14.86□□□□□ -0.03
CCDC88C-201ENST00000331194 NLRP5P59047 1200 aa14.86□□□□□ -0.03
CCDC88C-201ENST00000331194 SEC23AQ15436 765 aa14.86□□□□□ -0.03
CCDC88C-201ENST00000331194 CFAP221Q4G0U5 840 aa14.86□□□□□ -0.03
CCDC88C-201ENST00000331194 CCDC178Q5BJE1 867 aa14.86□□□□□ -0.03
CCDC88C-201ENST00000331194 DNAAF5Q86Y56 855 aa14.86□□□□□ -0.03
CCDC88C-201ENST00000331194 MDM1Q8TC05 714 aa14.86□□□□□ -0.03
CCDC88C-201ENST00000331194 GOLPH3Q9H4A6 298 aa14.86□□□□□ -0.03
CCDC88C-201ENST00000331194 TMBIM4Q9HC24 238 aa14.86□□□□□ -0.03
CCDC88C-201ENST00000331194 TJP1Q07157 1748 aa14.86□□□□□ -0.03
CCDC88C-201ENST00000331194 NMT2O60551 498 aa14.86□□□□□ -0.03
CCDC88C-201ENST00000331194 GBP2P32456 591 aaPredicted RBP14.86□□□□□ -0.03
CCDC88C-201ENST00000331194 FLT3P36888 993 aa14.86□□□□□ -0.03
CCDC88C-201ENST00000331194 ZCRB1Q8TBF4 217 aaKnown RBP14.86□□□□□ -0.03
CCDC88C-201ENST00000331194 PLAGL2Q9UPG8 496 aa14.86□□□□□ -0.03
CCDC88C-201ENST00000331194 EZRP15311 586 aaKnown RBP14.86□□□□□ -0.03
CCDC88C-201ENST00000331194 HSD17B3P37058 310 aa14.86□□□□□ -0.03
CCDC88C-201ENST00000331194 MRPL12P52815 198 aaKnown RBP14.86□□□□□ -0.03
CCDC88C-201ENST00000331194 EHHADHQ08426 723 aa14.86□□□□□ -0.03
CCDC88C-201ENST00000331194 RASGRF1Q13972 1273 aa14.86□□□□□ -0.03
CCDC88C-201ENST00000331194 UAP1Q16222 522 aaPredicted RBP14.86□□□□□ -0.03
CCDC88C-201ENST00000331194 TLDC1Q6P9B6 456 aa14.86□□□□□ -0.03
CCDC88C-201ENST00000331194 NUP58Q9BVL2 599 aa14.86□□□□□ -0.03
CCDC88C-201ENST00000331194 TMEM60Q9H2L4 133 aa14.86□□□□□ -0.03
CCDC88C-201ENST00000331194 DISC1Q9NRI5 854 aa14.86□□□□□ -0.03
CCDC88C-201ENST00000331194 L3MBTL1Q9Y468 752 aa14.86□□□□□ -0.03
CCDC88C-201ENST00000331194 USP54Q70EL1 1684 aa14.85□□□□□ -0.03
CCDC88C-201ENST00000331194 ANKRD18BA2A2Z9 1011 aa14.85□□□□□ -0.03
CCDC88C-201ENST00000331194 PALMO75781 387 aa14.85□□□□□ -0.03
CCDC88C-201ENST00000331194 SRBD1Q8N5C6 995 aaKnown RBP14.85□□□□□ -0.03
CCDC88C-201ENST00000331194 CNKSR2Q8WXI2 1034 aa14.85□□□□□ -0.03
CCDC88C-201ENST00000331194 RAPGEF5Q92565 580 aa14.85□□□□□ -0.03
CCDC88C-201ENST00000331194 STAMBPL1Q96FJ0 436 aa14.85□□□□□ -0.03
CCDC88C-201ENST00000331194 NEUROG2Q9H2A3 272 aa14.85□□□□□ -0.03
CCDC88C-201ENST00000331194 SCN11AQ9UI33 1791 aa14.85□□□□□ -0.03
CCDC88C-201ENST00000331194 TRPM3Q9HCF6 1732 aaPredicted RBP14.85□□□□□ -0.03
CCDC88C-201ENST00000331194 LRP6O75581 1613 aa14.85□□□□□ -0.03
CCDC88C-201ENST00000331194 PRPF3O43395 683 aaKnown RBP14.85□□□□□ -0.03
CCDC88C-201ENST00000331194 TRAPPC3O43617 180 aa14.85□□□□□ -0.03
CCDC88C-201ENST00000331194 RTN2O75298 545 aa14.85□□□□□ -0.03
CCDC88C-201ENST00000331194 TNFRSF8P28908 595 aa14.85□□□□□ -0.03
CCDC88C-201ENST00000331194 PLCB4Q15147 1175 aa14.85□□□□□ -0.03
CCDC88C-201ENST00000331194 CDC37Q16543 378 aaPredicted RBP14.85□□□□□ -0.03
CCDC88C-201ENST00000331194 NBPF20Q3BBV1 942 aa14.85□□□□□ -0.03
CCDC88C-201ENST00000331194 SPATA5Q8NB90 893 aa14.85□□□□□ -0.03
CCDC88C-201ENST00000331194 GIMAP8Q8ND71 665 aaPredicted RBP14.85□□□□□ -0.03
CCDC88C-201ENST00000331194 ABCC12Q96J65 1359 aa14.85□□□□□ -0.03
CCDC88C-201ENST00000331194 SLIT3O75094 1523 aa14.85□□□□□ -0.03
CCDC88C-201ENST00000331194 HMGB1P1B2RPK0 211 aaPredicted RBP14.84□□□□□ -0.03
CCDC88C-201ENST00000331194 ATRNO75882 1429 aa14.84□□□□□ -0.03
CCDC88C-201ENST00000331194 HIBCHQ6NVY1 386 aaPredicted RBP14.84□□□□□ -0.03
CCDC88C-201ENST00000331194 ISCA1Q9BUE6 129 aa14.84□□□□□ -0.03
CCDC88C-201ENST00000331194 TRIM6Q9C030 488 aaPredicted RBP14.84□□□□□ -0.03
CCDC88C-201ENST00000331194 NLRC4Q9NPP4 1024 aa14.84□□□□□ -0.03
CCDC88C-201ENST00000331194 SLC12A6Q9UHW9 1150 aa14.84□□□□□ -0.03
CCDC88C-201ENST00000331194 NOVA2Q9UNW9 492 aaKnown RBP14.84□□□□□ -0.03
CCDC88C-201ENST00000331194 FAM205AQ6ZU69 1335 aa14.84□□□□□ -0.03
CCDC88C-201ENST00000331194 ERVK-9P63128 1117 aa14.84□□□□□ -0.03
CCDC88C-201ENST00000331194 PDE4DQ08499 809 aa14.84□□□□□ -0.03
CCDC88C-201ENST00000331194 EMC10Q5UCC4 262 aa14.84□□□□□ -0.03
CCDC88C-201ENST00000331194 PPP4R3AQ6IN85 833 aa14.84□□□□□ -0.03
CCDC88C-201ENST00000331194 VGLL2Q8N8G2 317 aa14.84□□□□□ -0.03
CCDC88C-201ENST00000331194 C4orf32Q8N8J7 132 aa14.84□□□□□ -0.03
CCDC88C-201ENST00000331194 NOC3LQ8WTT2 800 aaKnown RBP14.84□□□□□ -0.03
CCDC88C-201ENST00000331194 P2RX5Q93086 422 aa14.84□□□□□ -0.03
CCDC88C-201ENST00000331194 HVCN1Q96D96 273 aa14.84□□□□□ -0.03
CCDC88C-201ENST00000331194 NID2Q14112 1375 aa14.84□□□□□ -0.03
CCDC88C-201ENST00000331194 CHD4Q14839 1912 aa14.84□□□□□ -0.03
CCDC88C-201ENST00000331194 CAMTA1Q9Y6Y1 1673 aa14.84□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms