RNA–Protein interactions for RNA: ENST00000324288.12

CIITA-201, Transcript of class II major histocompatibility complex transactivator, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CIITA, Length 11,952 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-201ENST00000324288 PCDH11XQ9BZA7 1347 aa8.58□□□□□ -1.04
CIITA-201ENST00000324288 PCDH11YQ9BZA8 1340 aa8.58□□□□□ -1.04
CIITA-201ENST00000324288 TESK2Q96S53 571 aa8.58□□□□□ -1.04
CIITA-201ENST00000324288 SGK1O00141 431 aa8.58□□□□□ -1.04
CIITA-201ENST00000324288 CYP4A11Q02928 519 aa8.58□□□□□ -1.04
CIITA-201ENST00000324288 MUM1L1Q5H9M0 696 aa8.58□□□□□ -1.04
CIITA-201ENST00000324288 USP6NLQ92738 828 aa8.58□□□□□ -1.04
CIITA-201ENST00000324288 CEP19Q96LK0 163 aa8.58□□□□□ -1.04
CIITA-201ENST00000324288 CCDC68Q9H2F9 335 aa8.58□□□□□ -1.04
CIITA-201ENST00000324288 KIAA1468Q9P260 1216 aa8.58□□□□□ -1.04
CIITA-201ENST00000324288 EPS15L1Q9UBC2 864 aa8.58□□□□□ -1.04
CIITA-201ENST00000324288 SYNDIG1LA6NDD5 238 aa8.58□□□□□ -1.04
CIITA-201ENST00000324288 NAA30Q147X3 362 aaPredicted RBP8.58□□□□□ -1.04
CIITA-201ENST00000324288 ANKRD35Q8N283 1001 aa8.58□□□□□ -1.04
CIITA-201ENST00000324288 USP40Q9NVE5 1235 aa8.58□□□□□ -1.04
CIITA-201ENST00000324288 PASKQ96RG2 1323 aa8.58□□□□□ -1.04
CIITA-201ENST00000324288 TCP10L2B9ZVM9 353 aa8.58□□□□□ -1.04
CIITA-201ENST00000324288 POLR2FP61218 127 aaKnown RBP8.58□□□□□ -1.04
CIITA-201ENST00000324288 KIAA2013Q8IYS2 634 aa8.58□□□□□ -1.04
CIITA-201ENST00000324288 ALKBH8Q96BT7 664 aaKnown RBP8.58□□□□□ -1.04
CIITA-201ENST00000324288 UBE3AQ05086 875 aa8.58□□□□□ -1.04
CIITA-201ENST00000324288 NLRX1Q86UT6 975 aa8.58□□□□□ -1.04
CIITA-201ENST00000324288 TFAP4Q01664 338 aa8.58□□□□□ -1.04
CIITA-201ENST00000324288 TADA2BQ86TJ2 420 aa8.58□□□□□ -1.04
CIITA-201ENST00000324288 GRAMD1CQ8IYS0 662 aa8.58□□□□□ -1.04
CIITA-201ENST00000324288 ABCB6Q9NP58 842 aa8.58□□□□□ -1.04
CIITA-201ENST00000324288 HAUS2Q9NVX0 235 aa8.58□□□□□ -1.04
CIITA-201ENST00000324288 CLIC4Q9Y696 253 aa8.58□□□□□ -1.04
CIITA-201ENST00000324288 KDM5BQ9UGL1 1544 aa8.58□□□□□ -1.04
CIITA-201ENST00000324288 LRRIQ4A6NIV6 560 aa8.58□□□□□ -1.04
CIITA-201ENST00000324288 HNRNPCL2B2RXH8 293 aa8.58□□□□□ -1.04
CIITA-201ENST00000324288 HNRNPCL1O60812 293 aaKnown RBP8.58□□□□□ -1.04
CIITA-201ENST00000324288 PDE6CP51160 858 aa8.58□□□□□ -1.04
CIITA-201ENST00000324288 NDUFA8P51970 172 aa8.58□□□□□ -1.04
CIITA-201ENST00000324288 RAP1GDS1P52306 607 aa8.58□□□□□ -1.04
CIITA-201ENST00000324288 XKR9Q5GH70 373 aa8.58□□□□□ -1.04
CIITA-201ENST00000324288 RINLQ6ZS11 566 aa8.58□□□□□ -1.04
CIITA-201ENST00000324288 ELAC2Q9BQ52 826 aaKnown RBP8.58□□□□□ -1.04
CIITA-201ENST00000324288 GPC4O75487 556 aa8.58□□□□□ -1.04
CIITA-201ENST00000324288 SERPINI2O75830 405 aa8.58□□□□□ -1.04
CIITA-201ENST00000324288 EIF2AQ9BY44 585 aaKnown RBP8.58□□□□□ -1.04
CIITA-201ENST00000324288 PCDHB4Q9Y5E5 795 aa8.58□□□□□ -1.04
CIITA-201ENST00000324288 TNRQ92752 1358 aa8.57□□□□□ -1.04
CIITA-201ENST00000324288 SH3TC1Q8TE82 1336 aa8.57□□□□□ -1.04
CIITA-201ENST00000324288 ARHGEF9O43307 516 aa8.57□□□□□ -1.04
CIITA-201ENST00000324288 H2AFZP0C0S5 128 aa8.57□□□□□ -1.04
CIITA-201ENST00000324288 PLTPP55058 493 aa8.57□□□□□ -1.04
CIITA-201ENST00000324288 H2AFVQ71UI9 128 aa8.57□□□□□ -1.04
CIITA-201ENST00000324288 PPM1KQ8N3J5 372 aa8.57□□□□□ -1.04
CIITA-201ENST00000324288 ECT2Q9H8V3 914 aa8.57□□□□□ -1.04
CIITA-201ENST00000324288 C14orf93Q9H972 538 aaKnown RBP8.57□□□□□ -1.04
CIITA-201ENST00000324288 PANK4Q9NVE7 773 aa8.57□□□□□ -1.04
CIITA-201ENST00000324288 EYA2O00167 538 aa8.57□□□□□ -1.04
CIITA-201ENST00000324288 EVI5O60447 810 aa8.57□□□□□ -1.04
CIITA-201ENST00000324288 WBP4O75554 376 aaKnown RBP8.57□□□□□ -1.04
CIITA-201ENST00000324288 ZAP70P43403 619 aa8.57□□□□□ -1.04
CIITA-201ENST00000324288 THOC2Q8NI27 1593 aaKnown RBP8.57□□□□□ -1.04
CIITA-201ENST00000324288 SH3BGRP55822 239 aaPredicted RBP8.57□□□□□ -1.04
CIITA-201ENST00000324288 ANGPTL8Q6UXH0 198 aa8.57□□□□□ -1.04
CIITA-201ENST00000324288 SAAL1Q96ER3 474 aa8.57□□□□□ -1.04
CIITA-201ENST00000324288 SUCLG2Q96I99 432 aa8.57□□□□□ -1.04
CIITA-201ENST00000324288 EPC1Q9H2F5 836 aa8.57□□□□□ -1.04
CIITA-201ENST00000324288 UBN1Q9NPG3 1134 aa8.57□□□□□ -1.04
CIITA-201ENST00000324288 NOC2LQ9Y3T9 749 aaKnown RBP8.57□□□□□ -1.04
CIITA-201ENST00000324288 ACTN1P12814 892 aa8.57□□□□□ -1.04
CIITA-201ENST00000324288 GFAPP14136 432 aa8.57□□□□□ -1.04
CIITA-201ENST00000324288 UBXN2AP68543 259 aa8.57□□□□□ -1.04
CIITA-201ENST00000324288 PSMD2Q13200 908 aa8.57□□□□□ -1.04
CIITA-201ENST00000324288 DMP1Q13316 513 aaPredicted RBP8.57□□□□□ -1.04
CIITA-201ENST00000324288 TTC30AQ86WT1 665 aa8.57□□□□□ -1.04
CIITA-201ENST00000324288 FAM193BQ96PV7 902 aaPredicted RBP8.57□□□□□ -1.04
CIITA-201ENST00000324288 NCAPGQ9BPX3 1015 aa8.57□□□□□ -1.04
CIITA-201ENST00000324288 MLXIPQ9HAP2 919 aa8.57□□□□□ -1.04
CIITA-201ENST00000324288 NOP53Q9NZM5 478 aaKnown RBP8.57□□□□□ -1.04
CIITA-201ENST00000324288 KNTC1P50748 2209 aa8.57□□□□□ -1.04
CIITA-201ENST00000324288 TPRP12270 2363 aaKnown RBP8.57□□□□□ -1.04
CIITA-201ENST00000324288 EIF3CLB5ME19 914 aaKnown RBP8.57□□□□□ -1.04
CIITA-201ENST00000324288 DKC1O60832 514 aaKnown RBP eCLIP8.57□□□□□ -1.04
CIITA-201ENST00000324288 INHBAP08476 426 aa8.57□□□□□ -1.04
CIITA-201ENST00000324288 EIF3CQ99613 913 aaKnown RBP8.57□□□□□ -1.04
CIITA-201ENST00000324288 OSBPL1AQ9BXW6 950 aa8.57□□□□□ -1.04
CIITA-201ENST00000324288 ZNF229Q9UJW7 825 aa8.57□□□□□ -1.04
CIITA-201ENST00000324288 STRIP2Q9ULQ0 834 aa8.57□□□□□ -1.04
CIITA-201ENST00000324288 PLAAQ9Y263 795 aa8.57□□□□□ -1.04
CIITA-201ENST00000324288 SOWAHDA6NJG2 315 aa8.57□□□□□ -1.04
CIITA-201ENST00000324288 SPAG7O75391 227 aa8.57□□□□□ -1.04
CIITA-201ENST00000324288 HLA-DPA1P20036 260 aa8.57□□□□□ -1.04
CIITA-201ENST00000324288 ERFP50548 548 aa8.57□□□□□ -1.04
CIITA-201ENST00000324288 NIM1KQ8IY84 436 aa8.57□□□□□ -1.04
CIITA-201ENST00000324288 SPC25Q9HBM1 224 aa8.57□□□□□ -1.04
CIITA-201ENST00000324288 STK32BQ9NY57 414 aa8.57□□□□□ -1.04
CIITA-201ENST00000324288 ANGPTL3Q9Y5C1 460 aa8.57□□□□□ -1.04
CIITA-201ENST00000324288 TNNC2P02585 160 aa8.57□□□□□ -1.04
CIITA-201ENST00000324288 RGS9BPQ6ZS82 235 aa8.57□□□□□ -1.04
CIITA-201ENST00000324288 GJA10Q969M2 543 aa8.57□□□□□ -1.04
CIITA-201ENST00000324288 DDX25Q9UHL0 483 aaKnown RBP8.57□□□□□ -1.04
CIITA-201ENST00000324288 EPN1Q9Y6I3 576 aaPredicted RBP8.57□□□□□ -1.04
CIITA-201ENST00000324288 FANCAO15360 1455 aa8.57□□□□□ -1.04
CIITA-201ENST00000324288 MAN1A2O60476 641 aa8.57□□□□□ -1.04
CIITA-201ENST00000324288 GSPT1P15170 499 aaKnown RBP8.57□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms