RNA–Protein interactions for RNA: ENST00000306726.6

PTPN9-201, Transcript of protein tyrosine phosphatase, non-receptor type 9, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene PTPN9, Length 3,862 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9-201ENST00000306726 PLS1Q14651 629 aa16.2■□□□□ 0.18
PTPN9-201ENST00000306726 R3HDM1Q15032 1099 aaKnown RBP16.2■□□□□ 0.18
PTPN9-201ENST00000306726 LRRC31Q6UY01 552 aa16.2■□□□□ 0.18
PTPN9-201ENST00000306726 NFU1Q9UMS0 254 aa16.2■□□□□ 0.18
PTPN9-201ENST00000306726 JRKLQ9Y4A0 524 aa16.2■□□□□ 0.18
PTPN9-201ENST00000306726 SCG2P13521 617 aa16.2■□□□□ 0.18
PTPN9-201ENST00000306726 LIFRP42702 1097 aa16.2■□□□□ 0.18
PTPN9-201ENST00000306726 SPAG1Q07617 926 aa16.2■□□□□ 0.18
PTPN9-201ENST00000306726 FCHSD1Q86WN1 690 aa16.2■□□□□ 0.18
PTPN9-201ENST00000306726 TGFBRAP1Q8WUH2 860 aa16.2■□□□□ 0.18
PTPN9-201ENST00000306726 ZNF219Q9P2Y4 722 aaPredicted RBP16.2■□□□□ 0.18
PTPN9-201ENST00000306726 LOC102724159A0A0B4J2E5 919 aa16.2■□□□□ 0.18
PTPN9-201ENST00000306726 EIF4E1BA6NMX2 242 aaKnown RBP16.2■□□□□ 0.18
PTPN9-201ENST00000306726 EIF4A3P38919 411 aaKnown RBP16.2■□□□□ 0.18
PTPN9-201ENST00000306726 KRT83P78385 493 aa16.2■□□□□ 0.18
PTPN9-201ENST00000306726 PWP2Q15269 919 aaKnown RBP16.2■□□□□ 0.18
PTPN9-201ENST00000306726 TBC1D10BQ4KMP7 808 aaPredicted RBP16.2■□□□□ 0.18
PTPN9-201ENST00000306726 USP17L2Q6R6M4 530 aa16.2■□□□□ 0.18
PTPN9-201ENST00000306726 SCLT1Q96NL6 688 aa16.2■□□□□ 0.18
PTPN9-201ENST00000306726 GSDMAQ96QA5 445 aa16.2■□□□□ 0.18
PTPN9-201ENST00000306726 TGFB2P61812 414 aa16.2■□□□□ 0.18
PTPN9-201ENST00000306726 SETQ01105 290 aaPredicted RBP16.2■□□□□ 0.18
PTPN9-201ENST00000306726 GFPT1Q06210 699 aaPredicted RBP16.2■□□□□ 0.18
PTPN9-201ENST00000306726 MSL1Q68DK7 614 aa16.2■□□□□ 0.18
PTPN9-201ENST00000306726 TICAM2Q86XR7 235 aa16.2■□□□□ 0.18
PTPN9-201ENST00000306726 OTUD6BQ8N6M0 293 aa16.2■□□□□ 0.18
PTPN9-201ENST00000306726 CCDC43Q96MW1 224 aaKnown RBP16.2■□□□□ 0.18
PTPN9-201ENST00000306726 TNRC6CQ9HCJ0 1690 aaKnown RBP16.19■□□□□ 0.18
PTPN9-201ENST00000306726 PDE2AO00408 941 aaPredicted RBP16.19■□□□□ 0.18
PTPN9-201ENST00000306726 ERLIN2O94905 339 aa16.19■□□□□ 0.18
PTPN9-201ENST00000306726 WHAMMP3Q1A5X7 153 aa16.19■□□□□ 0.18
PTPN9-201ENST00000306726 EPB41L5Q9HCM4 733 aa16.19■□□□□ 0.18
PTPN9-201ENST00000306726 BUB1BO60566 1050 aaPredicted RBP16.19■□□□□ 0.18
PTPN9-201ENST00000306726 PLCG1P19174 1290 aa16.19■□□□□ 0.18
PTPN9-201ENST00000306726 TBX2Q13207 712 aaPredicted RBP16.19■□□□□ 0.18
PTPN9-201ENST00000306726 CFAP58Q5T655 872 aa16.19■□□□□ 0.18
PTPN9-201ENST00000306726 PACS2Q86VP3 889 aa16.19■□□□□ 0.18
PTPN9-201ENST00000306726 OR2W6PQ8NHA6 318 aa16.19■□□□□ 0.18
PTPN9-201ENST00000306726 KRT12Q99456 494 aa16.19■□□□□ 0.18
PTPN9-201ENST00000306726 SEC24CP53992 1094 aa16.19■□□□□ 0.18
PTPN9-201ENST00000306726 GUCY1A3Q02108 690 aa16.19■□□□□ 0.18
PTPN9-201ENST00000306726 STK4Q13043 487 aa16.19■□□□□ 0.18
PTPN9-201ENST00000306726 ILDR2Q71H61 639 aa16.19■□□□□ 0.18
PTPN9-201ENST00000306726 CABP7Q86V35 215 aa16.19■□□□□ 0.18
PTPN9-201ENST00000306726 AMOTL1Q8IY63 956 aa16.19■□□□□ 0.18
PTPN9-201ENST00000306726 BLIDQ8IZY5 108 aa16.19■□□□□ 0.18
PTPN9-201ENST00000306726 MB21D1Q8N884 522 aa16.19■□□□□ 0.18
PTPN9-201ENST00000306726 FAM71BQ8TC56 605 aa16.19■□□□□ 0.18
PTPN9-201ENST00000306726 CD2APQ9Y5K6 639 aa16.19■□□□□ 0.18
PTPN9-201ENST00000306726 KIF13BQ9NQT8 1826 aa16.18■□□□□ 0.18
PTPN9-201ENST00000306726 INPP5BP32019 993 aa16.18■□□□□ 0.18
PTPN9-201ENST00000306726 PNMA1Q8ND90 353 aa16.18■□□□□ 0.18
PTPN9-201ENST00000306726 CAPS2Q9BXY5 557 aa16.18■□□□□ 0.18
PTPN9-201ENST00000306726 DCAF17Q5H9S7 520 aaPredicted RBP16.18■□□□□ 0.18
PTPN9-201ENST00000306726 SPON1Q9HCB6 807 aa16.18■□□□□ 0.18
PTPN9-201ENST00000306726 GOLGA6L10A6NI86 522 aa16.18■□□□□ 0.18
PTPN9-201ENST00000306726 TMEM110-MUSTN1A8MSY1 372 aa16.18■□□□□ 0.18
PTPN9-201ENST00000306726 UBLCP1Q8WVY7 318 aaPredicted RBP16.18■□□□□ 0.18
PTPN9-201ENST00000306726 AP1M1Q9BXS5 423 aa16.18■□□□□ 0.18
PTPN9-201ENST00000306726 E7EVH7 732 aa16.17■□□□□ 0.18
PTPN9-201ENST00000306726 USP8P40818 1118 aa16.17■□□□□ 0.18
PTPN9-201ENST00000306726 TAF4BQ92750 862 aa16.17■□□□□ 0.18
PTPN9-201ENST00000306726 FERMT2Q96AC1 680 aa16.17■□□□□ 0.18
PTPN9-201ENST00000306726 DPH5Q9H2P9 285 aa16.17■□□□□ 0.18
PTPN9-201ENST00000306726 RMND1Q9NWS8 449 aa16.17■□□□□ 0.18
PTPN9-201ENST00000306726 GTPBP6O43824 516 aaPredicted RBP16.17■□□□□ 0.18
PTPN9-201ENST00000306726 ADCY1Q08828 1119 aa16.17■□□□□ 0.18
PTPN9-201ENST00000306726 IFT88Q13099 833 aa16.17■□□□□ 0.18
PTPN9-201ENST00000306726 SGMS1Q86VZ5 419 aa16.17■□□□□ 0.18
PTPN9-201ENST00000306726 ARL8AQ96BM9 186 aa16.17■□□□□ 0.18
PTPN9-201ENST00000306726 COA7Q96BR5 231 aa16.17■□□□□ 0.18
PTPN9-201ENST00000306726 ALS2CR12Q96Q35 445 aa16.17■□□□□ 0.18
PTPN9-201ENST00000306726 PLCD4Q9BRC7 762 aa16.17■□□□□ 0.18
PTPN9-201ENST00000306726 CRNKL1Q9BZJ0 848 aaKnown RBP16.17■□□□□ 0.18
PTPN9-201ENST00000306726 TMEM260Q9NX78 707 aa16.17■□□□□ 0.18
PTPN9-201ENST00000306726 CAPN6Q9Y6Q1 641 aa16.17■□□□□ 0.18
PTPN9-201ENST00000306726 SRGNP10124 158 aa16.17■□□□□ 0.18
PTPN9-201ENST00000306726 RDXP35241 583 aaKnown RBP16.17■□□□□ 0.18
PTPN9-201ENST00000306726 CEP85LQ5SZL2 805 aa16.17■□□□□ 0.18
PTPN9-201ENST00000306726 SEC63Q9UGP8 760 aaKnown RBP16.17■□□□□ 0.18
PTPN9-201ENST00000306726 ANKRD31Q8N7Z5 1873 aa16.16■□□□□ 0.18
PTPN9-201ENST00000306726 POTEMA6NI47 508 aa16.16■□□□□ 0.18
PTPN9-201ENST00000306726 POLR2FP61218 127 aaKnown RBP16.16■□□□□ 0.18
PTPN9-201ENST00000306726 UBE4AQ14139 1066 aa16.16■□□□□ 0.18
PTPN9-201ENST00000306726 TRIML1Q8N9V2 468 aa16.16■□□□□ 0.18
PTPN9-201ENST00000306726 CEP104O60308 925 aa16.16■□□□□ 0.18
PTPN9-201ENST00000306726 CKAP4Q07065 602 aaKnown RBP16.16■□□□□ 0.18
PTPN9-201ENST00000306726 IFFO1Q0D2I5 559 aa16.16■□□□□ 0.18
PTPN9-201ENST00000306726 E2F5Q15329 346 aa16.16■□□□□ 0.18
PTPN9-201ENST00000306726 ANKRD40Q6AI12 368 aa16.16■□□□□ 0.18
PTPN9-201ENST00000306726 DDX42Q86XP3 938 aaKnown RBP eCLIP16.16■□□□□ 0.18
PTPN9-201ENST00000306726 CALML4Q96GE6 196 aa16.16■□□□□ 0.18
PTPN9-201ENST00000306726 NAA15Q9BXJ9 866 aaKnown RBP16.16■□□□□ 0.18
PTPN9-201ENST00000306726 HAUS4Q9H6D7 363 aa16.16■□□□□ 0.18
PTPN9-201ENST00000306726 BMP2KQ9NSY1 1161 aaPredicted RBP16.16■□□□□ 0.18
PTPN9-201ENST00000306726 LEMD3Q9Y2U8 911 aa16.16■□□□□ 0.18
PTPN9-201ENST00000306726 ACTN3Q08043 901 aaPredicted RBP16.16■□□□□ 0.18
PTPN9-201ENST00000306726 TRADDQ15628 312 aa16.16■□□□□ 0.18
PTPN9-201ENST00000306726 LRRC47Q8N1G4 583 aaKnown RBP16.16■□□□□ 0.18
PTPN9-201ENST00000306726 PPIL4Q8WUA2 492 aaKnown RBP eCLIP16.16■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms