RNA–Protein interactions for RNA: ENST00000292476.9

CPSF4-201, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CPSF4, Length 1,691 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-201ENST00000292476 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP18.95■□□□□ 0.62
CPSF4-201ENST00000292476 PTGDRQ13258 359 aa18.95■□□□□ 0.62
CPSF4-201ENST00000292476 PNOCQ13519 176 aa18.95■□□□□ 0.62
CPSF4-201ENST00000292476 ARID5BQ14865 1188 aa18.95■□□□□ 0.62
CPSF4-201ENST00000292476 LONRF3Q496Y0 759 aa18.95■□□□□ 0.62
CPSF4-201ENST00000292476 ARMC9Q7Z3E5 817 aa18.95■□□□□ 0.62
CPSF4-201ENST00000292476 PYM1Q9BRP8 204 aaKnown RBP18.95■□□□□ 0.62
CPSF4-201ENST00000292476 CCDC94Q9BW85 323 aaPredicted RBP18.95■□□□□ 0.62
CPSF4-201ENST00000292476 HSD3B7Q9H2F3 369 aa18.95■□□□□ 0.62
CPSF4-201ENST00000292476 C19orf81C9J6K1 198 aa18.94■□□□□ 0.62
CPSF4-201ENST00000292476 PPP1R12BO60237 982 aaPredicted RBP18.94■□□□□ 0.62
CPSF4-201ENST00000292476 PPP1R11O60927 126 aaPredicted RBP18.94■□□□□ 0.62
CPSF4-201ENST00000292476 FDX1P10109 184 aa18.94■□□□□ 0.62
CPSF4-201ENST00000292476 INPP5BP32019 993 aa18.94■□□□□ 0.62
CPSF4-201ENST00000292476 TMC6Q7Z403 805 aa18.94■□□□□ 0.62
CPSF4-201ENST00000292476 MLKLQ8NB16 471 aa18.94■□□□□ 0.62
CPSF4-201ENST00000292476 RASGRP4Q8TDF6 673 aa18.94■□□□□ 0.62
CPSF4-201ENST00000292476 BIN2Q9UBW5 565 aaPredicted RBP18.94■□□□□ 0.62
CPSF4-201ENST00000292476 ATAD5Q96QE3 1844 aa18.94■□□□□ 0.62
CPSF4-201ENST00000292476 FOSP01100 380 aaPredicted RBP18.93■□□□□ 0.62
CPSF4-201ENST00000292476 MCM7P33993 719 aa18.93■□□□□ 0.62
CPSF4-201ENST00000292476 AP3B2Q13367 1082 aa18.93■□□□□ 0.62
CPSF4-201ENST00000292476 POSTNQ15063 836 aa18.93■□□□□ 0.62
CPSF4-201ENST00000292476 INF2Q27J81 1249 aa18.93■□□□□ 0.62
CPSF4-201ENST00000292476 ZNF280CQ8ND82 737 aa18.93■□□□□ 0.62
CPSF4-201ENST00000292476 PCDHA5Q9Y5H7 936 aa18.93■□□□□ 0.62
CPSF4-201ENST00000292476 PTPRAP18433 802 aa18.92■□□□□ 0.62
CPSF4-201ENST00000292476 PRPHP41219 470 aa18.92■□□□□ 0.62
CPSF4-201ENST00000292476 SARSP49591 514 aaKnown RBP18.92■□□□□ 0.62
CPSF4-201ENST00000292476 CLK2P49760 499 aaKnown RBP18.92■□□□□ 0.62
CPSF4-201ENST00000292476 ZYXQ15942 572 aaKnown RBP18.92■□□□□ 0.62
CPSF4-201ENST00000292476 ARMCX5Q6P1M9 558 aa18.92■□□□□ 0.62
CPSF4-201ENST00000292476 PRPF38AQ8NAV1 312 aaKnown RBP18.92■□□□□ 0.62
CPSF4-201ENST00000292476 RANBP17Q9H2T7 1088 aaKnown RBP18.92■□□□□ 0.62
CPSF4-201ENST00000292476 FAM155AB1AL88 458 aaPredicted RBP18.92■□□□□ 0.62
CPSF4-201ENST00000292476 USP2O75604 605 aaPredicted RBP18.92■□□□□ 0.62
CPSF4-201ENST00000292476 LONP1P36776 959 aaKnown RBP18.92■□□□□ 0.62
CPSF4-201ENST00000292476 BACE1P56817 501 aa18.92■□□□□ 0.62
CPSF4-201ENST00000292476 NOM1Q5C9Z4 860 aaKnown RBP18.92■□□□□ 0.62
CPSF4-201ENST00000292476 JAKMIP3Q5VZ66 844 aa18.92■□□□□ 0.62
CPSF4-201ENST00000292476 TBCKQ8TEA7 893 aa18.92■□□□□ 0.62
CPSF4-201ENST00000292476 ZIC5Q96T25 663 aa18.92■□□□□ 0.62
CPSF4-201ENST00000292476 DOCK1Q14185 1865 aa18.91■□□□□ 0.62
CPSF4-201ENST00000292476 THSD7BQ9C0I4 1608 aa18.91■□□□□ 0.62
CPSF4-201ENST00000292476 GCFC2P16383 781 aaKnown RBP18.91■□□□□ 0.62
CPSF4-201ENST00000292476 UBASH3AP57075 661 aa18.91■□□□□ 0.62
CPSF4-201ENST00000292476 KIAA1755Q5JYT7 1200 aa18.91■□□□□ 0.62
CPSF4-201ENST00000292476 DTHD1Q6ZMT9 781 aa18.91■□□□□ 0.62
CPSF4-201ENST00000292476 FCHSD1Q86WN1 690 aa18.91■□□□□ 0.62
CPSF4-201ENST00000292476 RASAL3Q86YV0 1011 aa18.91■□□□□ 0.62
CPSF4-201ENST00000292476 SPATA20Q8TB22 786 aa18.91■□□□□ 0.62
CPSF4-201ENST00000292476 KIFC2Q96AC6 838 aa18.91■□□□□ 0.62
CPSF4-201ENST00000292476 MRPL11Q9Y3B7 192 aaKnown RBP18.91■□□□□ 0.62
CPSF4-201ENST00000292476 OTOFQ9HC10 1997 aa18.9■□□□□ 0.62
CPSF4-201ENST00000292476 CCNT1O60563 726 aaKnown RBP18.9■□□□□ 0.62
CPSF4-201ENST00000292476 SLC10A3P09131 477 aa18.9■□□□□ 0.62
CPSF4-201ENST00000292476 TXLNAP40222 546 aa18.9■□□□□ 0.62
CPSF4-201ENST00000292476 IREB2P48200 963 aaKnown RBP18.9■□□□□ 0.62
CPSF4-201ENST00000292476 MAP3K9P80192 1104 aa18.9■□□□□ 0.62
CPSF4-201ENST00000292476 SPP2Q13103 211 aa18.9■□□□□ 0.62
CPSF4-201ENST00000292476 LETM2Q2VYF4 491 aa18.9■□□□□ 0.62
CPSF4-201ENST00000292476 LDLRAD1Q5T700 205 aa18.9■□□□□ 0.62
CPSF4-201ENST00000292476 DDX55Q8NHQ9 600 aaKnown RBP eCLIP18.9■□□□□ 0.626e-7■■■■□ 23.4
CPSF4-201ENST00000292476 KIF18AQ8NI77 898 aa18.9■□□□□ 0.62
CPSF4-201ENST00000292476 ENOX1Q8TC92 643 aaKnown RBP18.9■□□□□ 0.62
CPSF4-201ENST00000292476 SMARCE1Q969G3 411 aa18.9■□□□□ 0.62
CPSF4-201ENST00000292476 ZKSCAN4Q969J2 545 aaPredicted RBP18.9■□□□□ 0.62
CPSF4-201ENST00000292476 CCDC102AQ96A19 550 aa18.9■□□□□ 0.62
CPSF4-201ENST00000292476 CLMNQ96JQ2 1002 aa18.9■□□□□ 0.62
CPSF4-201ENST00000292476 SLF1Q9BQI6 1058 aa18.9■□□□□ 0.62
CPSF4-201ENST00000292476 CSRNP2Q9H175 543 aa18.9■□□□□ 0.62
CPSF4-201ENST00000292476 MAN1B1Q9UKM7 699 aa18.9■□□□□ 0.62
CPSF4-201ENST00000292476 ABCB11O95342 1321 aa18.9■□□□□ 0.62
CPSF4-201ENST00000292476 USP27XA6NNY8 438 aa18.89■□□□□ 0.61
CPSF4-201ENST00000292476 ADAMTS3O15072 1205 aa18.89■□□□□ 0.61
CPSF4-201ENST00000292476 ACTN4O43707 911 aaKnown RBP18.89■□□□□ 0.61
CPSF4-201ENST00000292476 SERPINC1P01008 464 aa18.89■□□□□ 0.61
CPSF4-201ENST00000292476 MKRN3Q13064 507 aaKnown RBP18.89■□□□□ 0.61
CPSF4-201ENST00000292476 MTMR2Q13614 643 aa18.89■□□□□ 0.61
CPSF4-201ENST00000292476 MORC3Q14149 939 aa18.89■□□□□ 0.61
CPSF4-201ENST00000292476 PPP4R3AQ6IN85 833 aa18.89■□□□□ 0.61
CPSF4-201ENST00000292476 VSTM4Q8IW00 320 aa18.89■□□□□ 0.61
CPSF4-201ENST00000292476 PDCL2Q8N4E4 241 aa18.89■□□□□ 0.61
CPSF4-201ENST00000292476 C12orf42Q96LP6 360 aa18.89■□□□□ 0.61
CPSF4-201ENST00000292476 FRMD4AQ9P2Q2 1039 aaPredicted RBP18.89■□□□□ 0.61
CPSF4-201ENST00000292476 CSADQ9Y600 493 aa18.89■□□□□ 0.61
CPSF4-201ENST00000292476 ZHX2Q9Y6X8 837 aa18.89■□□□□ 0.61
CPSF4-201ENST00000292476 PIK3CDO00329 1044 aa18.89■□□□□ 0.61
CPSF4-201ENST00000292476 HSPA1AP0DMV8 641 aaKnown RBP18.89■□□□□ 0.61
CPSF4-201ENST00000292476 HSPA1BP0DMV9 641 aaKnown RBP18.89■□□□□ 0.61
CPSF4-201ENST00000292476 USP11P51784 963 aa18.89■□□□□ 0.61
CPSF4-201ENST00000292476 NOGQ13253 232 aa18.89■□□□□ 0.61
CPSF4-201ENST00000292476 E4F1Q66K89 784 aaPredicted RBP18.89■□□□□ 0.61
CPSF4-201ENST00000292476 C4orf32Q8N8J7 132 aa18.89■□□□□ 0.61
CPSF4-201ENST00000292476 AK8Q96MA6 479 aa18.89■□□□□ 0.61
CPSF4-201ENST00000292476 TMOD4Q9NZQ9 345 aa18.89■□□□□ 0.61
CPSF4-201ENST00000292476 CTDP1Q9Y5B0 961 aaPredicted RBP18.89■□□□□ 0.61
CPSF4-201ENST00000292476 VWA3AA6NCI4 1184 aa18.88■□□□□ 0.61
CPSF4-201ENST00000292476 SPDYE3A6NKU9 549 aa18.88■□□□□ 0.61
CPSF4-201ENST00000292476 POLR2DO15514 142 aaKnown RBP18.88■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms