RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 TBC1D7Q9P0N9 293 aa12.92□□□□□ -0.34
VPS4A-201ENST00000254950 FBXO2Q9UK22 296 aaPredicted RBP12.92□□□□□ -0.34
VPS4A-201ENST00000254950 TJP1Q07157 1748 aa12.91□□□□□ -0.34
VPS4A-201ENST00000254950 KIF2AO00139 706 aaPredicted RBP12.91□□□□□ -0.34
VPS4A-201ENST00000254950 TDP2O95551 362 aa12.91□□□□□ -0.34
VPS4A-201ENST00000254950 HSP90AA2PQ14568 343 aaPredicted RBP12.91□□□□□ -0.34
VPS4A-201ENST00000254950 DPCR1Q3MIW9 517 aa12.91□□□□□ -0.34
VPS4A-201ENST00000254950 MAEAQ7L5Y9 396 aa12.91□□□□□ -0.34
VPS4A-201ENST00000254950 DAGLBQ8NCG7 672 aa12.91□□□□□ -0.34
VPS4A-201ENST00000254950 TCHPQ9BT92 498 aa12.91□□□□□ -0.34
VPS4A-201ENST00000254950 CCDC169A6NNP5 214 aa12.91□□□□□ -0.34
VPS4A-201ENST00000254950 INPP5BP32019 993 aa12.91□□□□□ -0.34
VPS4A-201ENST00000254950 PRPHP41219 470 aa12.91□□□□□ -0.34
VPS4A-201ENST00000254950 SETQ01105 290 aaPredicted RBP12.91□□□□□ -0.34
VPS4A-201ENST00000254950 BRDTQ58F21 947 aaPredicted RBP12.91□□□□□ -0.34
VPS4A-201ENST00000254950 FAM26FQ5R3K3 315 aa12.91□□□□□ -0.34
VPS4A-201ENST00000254950 NBPF11Q86T75 865 aa12.91□□□□□ -0.34
VPS4A-201ENST00000254950 MMRN2Q9H8L6 949 aa12.91□□□□□ -0.34
VPS4A-201ENST00000254950 SEPT11Q9NVA2 429 aaKnown RBP12.91□□□□□ -0.34
VPS4A-201ENST00000254950 SKILP12757 684 aa12.91□□□□□ -0.34
VPS4A-201ENST00000254950 STAT3P40763 770 aa12.91□□□□□ -0.34
VPS4A-201ENST00000254950 PKN1Q16512 942 aa12.91□□□□□ -0.34
VPS4A-201ENST00000254950 POTEDQ86YR6 584 aa12.91□□□□□ -0.34
VPS4A-201ENST00000254950 PAGE5Q96GU1 130 aa12.91□□□□□ -0.34
VPS4A-201ENST00000254950 MRPL44Q9H9J2 332 aaKnown RBP12.91□□□□□ -0.34
VPS4A-201ENST00000254950 CICQ96RK0 1608 aaPredicted RBP12.91□□□□□ -0.34
VPS4A-201ENST00000254950 BAZ2BQ9UIF8 2168 aaKnown RBP12.91□□□□□ -0.34
VPS4A-201ENST00000254950 EPHX2P34913 555 aa12.9□□□□□ -0.34
VPS4A-201ENST00000254950 MKRN3Q13064 507 aaKnown RBP12.9□□□□□ -0.34
VPS4A-201ENST00000254950 FASTKD5Q7L8L6 764 aaKnown RBP12.9□□□□□ -0.34
VPS4A-201ENST00000254950 ANKRD13AQ8IZ07 590 aa12.9□□□□□ -0.34
VPS4A-201ENST00000254950 MYOCDQ8IZQ8 938 aa12.9□□□□□ -0.34
VPS4A-201ENST00000254950 ZNF830Q96NB3 372 aaPredicted RBP12.9□□□□□ -0.34
VPS4A-201ENST00000254950 VPS16Q9H269 839 aa12.9□□□□□ -0.34
VPS4A-201ENST00000254950 GPRC5DQ9NZD1 345 aa12.9□□□□□ -0.34
VPS4A-201ENST00000254950 COL4A3BPQ9Y5P4 624 aa12.9□□□□□ -0.34
VPS4A-201ENST00000254950 PTPN14Q15678 1187 aa12.9□□□□□ -0.34
VPS4A-201ENST00000254950 NLGN2Q8NFZ4 835 aa12.9□□□□□ -0.34
VPS4A-201ENST00000254950 GLG1Q92896 1179 aa12.9□□□□□ -0.34
VPS4A-201ENST00000254950 SPAG5Q96R06 1193 aa12.9□□□□□ -0.34
VPS4A-201ENST00000254950 PANK4Q9NVE7 773 aa12.9□□□□□ -0.34
VPS4A-201ENST00000254950 PAPPAQ13219 1627 aa12.9□□□□□ -0.34
VPS4A-201ENST00000254950 COL1A1P02452 1464 aaPredicted RBP12.9□□□□□ -0.34
VPS4A-201ENST00000254950 GCNT3O95395 438 aa12.9□□□□□ -0.34
VPS4A-201ENST00000254950 ERCC5P28715 1186 aaPredicted RBP12.9□□□□□ -0.34
VPS4A-201ENST00000254950 TBC1D8BQ0IIM8 1120 aa12.9□□□□□ -0.34
VPS4A-201ENST00000254950 NELFCDQ8IXH7 590 aa12.9□□□□□ -0.34
VPS4A-201ENST00000254950 ZKSCAN4Q969J2 545 aaPredicted RBP12.9□□□□□ -0.34
VPS4A-201ENST00000254950 FBXO28Q9NVF7 368 aa12.9□□□□□ -0.34
VPS4A-201ENST00000254950 MAN1B1Q9UKM7 699 aa12.9□□□□□ -0.34
VPS4A-201ENST00000254950 CALUO43852 315 aaPredicted RBP12.9□□□□□ -0.35
VPS4A-201ENST00000254950 PTGS1P23219 599 aa12.9□□□□□ -0.35
VPS4A-201ENST00000254950 ENOX2Q16206 610 aaKnown RBP12.9□□□□□ -0.35
VPS4A-201ENST00000254950 XKR9Q5GH70 373 aa12.9□□□□□ -0.35
VPS4A-201ENST00000254950 CEP135Q66GS9 1140 aa12.9□□□□□ -0.35
VPS4A-201ENST00000254950 NOC4LQ9BVI4 516 aaKnown RBP12.9□□□□□ -0.35
VPS4A-201ENST00000254950 TEX13BQ9BXU2 312 aa12.9□□□□□ -0.35
VPS4A-201ENST00000254950 ACAD9Q9H845 621 aa12.9□□□□□ -0.35
VPS4A-201ENST00000254950 LARSQ9P2J5 1176 aaKnown RBP12.9□□□□□ -0.35
VPS4A-201ENST00000254950 ZKSCAN5Q9Y2L8 839 aa12.9□□□□□ -0.35
VPS4A-201ENST00000254950 VIRMAQ69YN4 1812 aaKnown RBP12.89□□□□□ -0.35
VPS4A-201ENST00000254950 POTEMA6NI47 508 aa12.89□□□□□ -0.35
VPS4A-201ENST00000254950 EPB41P11171 864 aaKnown RBP12.89□□□□□ -0.35
VPS4A-201ENST00000254950 MCM6Q14566 821 aa12.89□□□□□ -0.35
VPS4A-201ENST00000254950 NSUN6Q8TEA1 469 aaKnown RBP12.89□□□□□ -0.35
VPS4A-201ENST00000254950 ATP6V0A1Q93050 837 aa12.89□□□□□ -0.35
VPS4A-201ENST00000254950 NACC1Q96RE7 527 aa12.89□□□□□ -0.35
VPS4A-201ENST00000254950 KCNG1Q9UIX4 513 aa12.89□□□□□ -0.35
VPS4A-201ENST00000254950 ROBO3Q96MS0 1386 aa12.89□□□□□ -0.35
VPS4A-201ENST00000254950 GABPAQ06546 454 aa12.89□□□□□ -0.35
VPS4A-201ENST00000254950 SPATA1Q5VX52 437 aa12.89□□□□□ -0.35
VPS4A-201ENST00000254950 C11orf57Q6ZUT1 292 aaPredicted RBP12.89□□□□□ -0.35
VPS4A-201ENST00000254950 TRMT1Q9NXH9 659 aaKnown RBP12.89□□□□□ -0.35
VPS4A-201ENST00000254950 FRMD4BQ9Y2L6 1034 aa12.89□□□□□ -0.35
VPS4A-201ENST00000254950 A0A087WWV3 80 aa12.89□□□□□ -0.35
VPS4A-201ENST00000254950 DPP9Q86TI2 863 aa12.89□□□□□ -0.35
VPS4A-201ENST00000254950 SRRTQ9BXP5 876 aaKnown RBP12.89□□□□□ -0.35
VPS4A-201ENST00000254950 SLC39A2Q9NP94 309 aa12.89□□□□□ -0.35
VPS4A-201ENST00000254950 EXOC7Q9UPT5 735 aa12.89□□□□□ -0.35
VPS4A-201ENST00000254950 IKBKBO14920 756 aa12.88□□□□□ -0.35
VPS4A-201ENST00000254950 MKL1Q969V6 931 aa12.88□□□□□ -0.35
VPS4A-201ENST00000254950 SYT17Q9BSW7 474 aa12.88□□□□□ -0.35
VPS4A-201ENST00000254950 FANCLQ9NW38 375 aa12.88□□□□□ -0.35
VPS4A-201ENST00000254950 SYNPO2Q9UMS6 1093 aa12.88□□□□□ -0.35
VPS4A-201ENST00000254950 THSD7AQ9UPZ6 1657 aa12.88□□□□□ -0.35
VPS4A-201ENST00000254950 NFKBIEO00221 500 aa12.88□□□□□ -0.35
VPS4A-201ENST00000254950 BACE1P56817 501 aa12.88□□□□□ -0.35
VPS4A-201ENST00000254950 FAM178BQ8IXR5 827 aa12.88□□□□□ -0.35
VPS4A-201ENST00000254950 NEK11Q8NG66 645 aa12.88□□□□□ -0.35
VPS4A-201ENST00000254950 TAB2Q9NYJ8 693 aa12.88□□□□□ -0.35
VPS4A-201ENST00000254950 PCDHB13Q9Y5F0 798 aa12.88□□□□□ -0.35
VPS4A-201ENST00000254950 GOLGA6L9A6NEM1 432 aa12.87□□□□□ -0.35
VPS4A-201ENST00000254950 PLA2G4BP0C869 781 aa12.87□□□□□ -0.35
VPS4A-201ENST00000254950 MORC3Q14149 939 aa12.87□□□□□ -0.35
VPS4A-201ENST00000254950 SEPT14Q6ZU15 432 aa12.87□□□□□ -0.35
VPS4A-201ENST00000254950 CAGE1Q8TC20 777 aa12.87□□□□□ -0.35
VPS4A-201ENST00000254950 ZFP91Q96JP5 570 aaPredicted RBP12.87□□□□□ -0.35
VPS4A-201ENST00000254950 IWS1Q96ST2 819 aa12.87□□□□□ -0.35
VPS4A-201ENST00000254950 XPO4Q9C0E2 1151 aaKnown RBP12.87□□□□□ -0.35
VPS4A-201ENST00000254950 CCSER1Q9C0I3 900 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms