RNA–Protein interactions for RNA: ENST00000254630.11

PTCD3-201, Transcript of pentatricopeptide repeat domain 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTCD3, Length 6,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-201ENST00000254630 TYW1Q9NV66 732 aaKnown RBP9.52□□□□□ -0.89
PTCD3-201ENST00000254630 BMP3P12645 472 aa9.52□□□□□ -0.89
PTCD3-201ENST00000254630 CDC25BP30305 580 aa9.52□□□□□ -0.89
PTCD3-201ENST00000254630 COPB1P53618 953 aaKnown RBP9.52□□□□□ -0.89
PTCD3-201ENST00000254630 PLCB4Q15147 1175 aa9.52□□□□□ -0.89
PTCD3-201ENST00000254630 FAM26FQ5R3K3 315 aa9.52□□□□□ -0.89
PTCD3-201ENST00000254630 ZNF589Q86UQ0 364 aaPredicted RBP9.52□□□□□ -0.89
PTCD3-201ENST00000254630 RTKN2Q8IZC4 609 aa9.52□□□□□ -0.89
PTCD3-201ENST00000254630 ARHGAP24Q8N264 748 aa9.52□□□□□ -0.89
PTCD3-201ENST00000254630 AK8Q96MA6 479 aa9.52□□□□□ -0.89
PTCD3-201ENST00000254630 PPP2R2CQ9Y2T4 447 aa9.52□□□□□ -0.89
PTCD3-201ENST00000254630 PLA2R1Q13018 1463 aa9.52□□□□□ -0.89
PTCD3-201ENST00000254630 GOLGA8KD6RF30 607 aa9.52□□□□□ -0.89
PTCD3-201ENST00000254630 PFDN6O15212 129 aa9.52□□□□□ -0.89
PTCD3-201ENST00000254630 S100BP04271 92 aaPredicted RBP9.52□□□□□ -0.89
PTCD3-201ENST00000254630 RBM6P78332 1123 aaKnown RBP9.52□□□□□ -0.89
PTCD3-201ENST00000254630 PPARDQ03181 441 aa9.52□□□□□ -0.89
PTCD3-201ENST00000254630 PTPROQ16827 1216 aa9.52□□□□□ -0.89
PTCD3-201ENST00000254630 ABI1Q8IZP0 508 aa9.52□□□□□ -0.89
PTCD3-201ENST00000254630 JPH2Q9BR39 696 aaPredicted RBP9.52□□□□□ -0.89
PTCD3-201ENST00000254630 RNF26Q9BY78 433 aaPredicted RBP9.52□□□□□ -0.89
PTCD3-201ENST00000254630 DHX36Q9H2U1 1008 aaKnown RBP9.52□□□□□ -0.89
PTCD3-201ENST00000254630 ADGRB3O60242 1522 aa9.52□□□□□ -0.89
PTCD3-201ENST00000254630 AFPP02771 609 aaKnown RBP9.52□□□□□ -0.89
PTCD3-201ENST00000254630 PSAPP07602 524 aa9.52□□□□□ -0.89
PTCD3-201ENST00000254630 AOC3Q16853 763 aa9.52□□□□□ -0.89
PTCD3-201ENST00000254630 EXOC3L4Q17RC7 722 aa9.52□□□□□ -0.89
PTCD3-201ENST00000254630 FAM182BQ5T319 152 aa9.52□□□□□ -0.89
PTCD3-201ENST00000254630 CCDC127Q96BQ5 260 aa9.52□□□□□ -0.89
PTCD3-201ENST00000254630 RPGRIP1Q96KN7 1286 aa9.52□□□□□ -0.89
PTCD3-201ENST00000254630 RILPQ96NA2 401 aa9.52□□□□□ -0.89
PTCD3-201ENST00000254630 SRP68Q9UHB9 627 aaKnown RBP9.52□□□□□ -0.89
PTCD3-201ENST00000254630 UNC13BO14795 1591 aa9.51□□□□□ -0.89
PTCD3-201ENST00000254630 BUB1BO60566 1050 aaPredicted RBP9.51□□□□□ -0.89
PTCD3-201ENST00000254630 RAD17O75943 681 aa9.51□□□□□ -0.89
PTCD3-201ENST00000254630 POLR2BP30876 1174 aaKnown RBP9.51□□□□□ -0.89
PTCD3-201ENST00000254630 TRAPPC10P48553 1259 aa9.51□□□□□ -0.89
PTCD3-201ENST00000254630 ZNF827Q17R98 1081 aa9.51□□□□□ -0.89
PTCD3-201ENST00000254630 CC2D2BQ6DHV5 1058 aa9.51□□□□□ -0.89
PTCD3-201ENST00000254630 RASGRP4Q8TDF6 673 aa9.51□□□□□ -0.89
PTCD3-201ENST00000254630 CACTINQ8WUQ7 758 aaKnown RBP9.51□□□□□ -0.89
PTCD3-201ENST00000254630 ALKQ9UM73 1620 aa9.51□□□□□ -0.89
PTCD3-201ENST00000254630 NDUFAB1O14561 156 aa9.51□□□□□ -0.89
PTCD3-201ENST00000254630 RGS16O15492 202 aaPredicted RBP9.51□□□□□ -0.89
PTCD3-201ENST00000254630 CTNNA1P35221 906 aaKnown RBP9.51□□□□□ -0.89
PTCD3-201ENST00000254630 NSFP46459 744 aaKnown RBP9.51□□□□□ -0.89
PTCD3-201ENST00000254630 TTBK2Q6IQ55 1244 aa9.51□□□□□ -0.89
PTCD3-201ENST00000254630 ZBTB33Q86T24 672 aa9.51□□□□□ -0.89
PTCD3-201ENST00000254630 CTAGE3PQ8IX95 158 aa9.51□□□□□ -0.89
PTCD3-201ENST00000254630 ZNF215Q9UL58 517 aaPredicted RBP9.51□□□□□ -0.89
PTCD3-201ENST00000254630 KCNQ4P56696 695 aa9.51□□□□□ -0.89
PTCD3-201ENST00000254630 MKRN3Q13064 507 aaKnown RBP9.51□□□□□ -0.89
PTCD3-201ENST00000254630 POTEDQ86YR6 584 aa9.51□□□□□ -0.89
PTCD3-201ENST00000254630 GADD45GIP1Q8TAE8 222 aaPredicted RBP9.51□□□□□ -0.89
PTCD3-201ENST00000254630 KANSL2Q9H9L4 492 aa9.51□□□□□ -0.89
PTCD3-201ENST00000254630 GOLGA8CPA6NN73 597 aa9.51□□□□□ -0.89
PTCD3-201ENST00000254630 EIF3CLB5ME19 914 aaKnown RBP9.51□□□□□ -0.89
PTCD3-201ENST00000254630 PRKAB2O43741 272 aa9.51□□□□□ -0.89
PTCD3-201ENST00000254630 ZSCAN20P17040 1043 aaPredicted RBP9.51□□□□□ -0.89
PTCD3-201ENST00000254630 OAS2P29728 719 aaKnown RBP9.51□□□□□ -0.89
PTCD3-201ENST00000254630 NXNQ6DKJ4 435 aa9.51□□□□□ -0.89
PTCD3-201ENST00000254630 MAP4K1Q92918 833 aa9.51□□□□□ -0.89
PTCD3-201ENST00000254630 NT5C1BQ96P26 610 aa9.51□□□□□ -0.89
PTCD3-201ENST00000254630 EIF3CQ99613 913 aaKnown RBP9.51□□□□□ -0.89
PTCD3-201ENST00000254630 DESI2Q9BSY9 194 aa9.51□□□□□ -0.89
PTCD3-201ENST00000254630 TMEM63CQ9P1W3 806 aa9.51□□□□□ -0.89
PTCD3-201ENST00000254630 HNRNPDLO14979 420 aaKnown RBP9.51□□□□□ -0.89
PTCD3-201ENST00000254630 MYL3P08590 195 aa9.51□□□□□ -0.89
PTCD3-201ENST00000254630 BFSP1Q12934 665 aa9.51□□□□□ -0.89
PTCD3-201ENST00000254630 TBCKQ8TEA7 893 aa9.51□□□□□ -0.89
PTCD3-201ENST00000254630 TSC1Q92574 1164 aa9.51□□□□□ -0.89
PTCD3-201ENST00000254630 TRIM11Q96F44 468 aa9.51□□□□□ -0.89
PTCD3-201ENST00000254630 MASTLQ96GX5 879 aa9.51□□□□□ -0.89
PTCD3-201ENST00000254630 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.51□□□□□ -0.89
PTCD3-201ENST00000254630 WDR11Q9BZH6 1224 aa9.51□□□□□ -0.89
PTCD3-201ENST00000254630 VCXQ9H320 206 aa9.51□□□□□ -0.89
PTCD3-201ENST00000254630 SPATA31E1Q6ZUB1 1445 aa9.5□□□□□ -0.89
PTCD3-201ENST00000254630 HGSO14964 777 aaPredicted RBP9.5□□□□□ -0.89
PTCD3-201ENST00000254630 MMP1P03956 469 aa9.5□□□□□ -0.89
PTCD3-201ENST00000254630 USP17L8P0C7I0 530 aa9.5□□□□□ -0.89
PTCD3-201ENST00000254630 TROVE2P10155 538 aaKnown RBP eCLIP9.5□□□□□ -0.894e-30■□□□□ 10.4
PTCD3-201ENST00000254630 SNAP25P60880 206 aa9.5□□□□□ -0.89
PTCD3-201ENST00000254630 CDC37Q16543 378 aaPredicted RBP9.5□□□□□ -0.89
PTCD3-201ENST00000254630 UBE2SQ16763 222 aa9.5□□□□□ -0.89
PTCD3-201ENST00000254630 ZNF658Q5TYW1 1059 aaPredicted RBP9.5□□□□□ -0.89
PTCD3-201ENST00000254630 BBOF1Q8ND07 529 aa9.5□□□□□ -0.89
PTCD3-201ENST00000254630 GPR101Q96P66 508 aaPredicted RBP9.5□□□□□ -0.89
PTCD3-201ENST00000254630 LARSQ9P2J5 1176 aaKnown RBP9.5□□□□□ -0.89
PTCD3-201ENST00000254630 ATF5Q9Y2D1 282 aaPredicted RBP9.5□□□□□ -0.89
PTCD3-201ENST00000254630 ADGRL3Q9HAR2 1447 aa9.5□□□□□ -0.89
PTCD3-201ENST00000254630 RNF17Q9BXT8 1623 aaKnown RBP9.5□□□□□ -0.89
PTCD3-201ENST00000254630 SRGAP2BP0DMP2 458 aa9.5□□□□□ -0.89
PTCD3-201ENST00000254630 TBC1D10BQ4KMP7 808 aaPredicted RBP9.5□□□□□ -0.89
PTCD3-201ENST00000254630 ZNF526Q8TF50 670 aaPredicted RBP9.5□□□□□ -0.89
PTCD3-201ENST00000254630 DYNLL2Q96FJ2 89 aa9.5□□□□□ -0.89
PTCD3-201ENST00000254630 RABEP2Q9H5N1 569 aa9.5□□□□□ -0.89
PTCD3-201ENST00000254630 BSDC1Q9NW68 430 aaPredicted RBP9.5□□□□□ -0.89
PTCD3-201ENST00000254630 TYW5A2RUC4 315 aaKnown RBP9.5□□□□□ -0.89
PTCD3-201ENST00000254630 MED7O43513 233 aa9.5□□□□□ -0.89
PTCD3-201ENST00000254630 GCFC2P16383 781 aaKnown RBP9.5□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms