RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 DAGLBQ8NCG7 672 aa15.1■□□□□ 0.01
LDLR-201ENST00000252444 GOLGA8HP0CJ92 632 aa15.1■□□□□ 0.01
LDLR-201ENST00000252444 CETPP11597 493 aa15.1■□□□□ 0.01
LDLR-201ENST00000252444 SKILP12757 684 aa15.1■□□□□ 0.01
LDLR-201ENST00000252444 TNNT1P13805 278 aa15.1■□□□□ 0.01
LDLR-201ENST00000252444 LIG4P49917 911 aa15.1■□□□□ 0.01
LDLR-201ENST00000252444 BIRC3Q13489 604 aa15.1■□□□□ 0.01
LDLR-201ENST00000252444 ZSWIM4Q9H7M6 989 aa15.1■□□□□ 0.01
LDLR-201ENST00000252444 RIC1Q4ADV7 1423 aa15.09■□□□□ 0.01
LDLR-201ENST00000252444 JAKMIP2Q96AA8 810 aa15.09■□□□□ 0.01
LDLR-201ENST00000252444 PKNOX2Q96KN3 472 aa15.09■□□□□ 0.01
LDLR-201ENST00000252444 TECP42680 631 aa15.09■□□□□ 0.01
LDLR-201ENST00000252444 FANCCQ00597 558 aa15.09■□□□□ 0.01
LDLR-201ENST00000252444 CEP135Q66GS9 1140 aa15.09■□□□□ 0.01
LDLR-201ENST00000252444 SPDYE4A6NLX3 237 aa15.09■□□□□ 0.01
LDLR-201ENST00000252444 LDHAP00338 332 aaKnown RBP15.09■□□□□ 0.01
LDLR-201ENST00000252444 TBC1D10BQ4KMP7 808 aaPredicted RBP15.09■□□□□ 0.01
LDLR-201ENST00000252444 ZNF658Q5TYW1 1059 aaPredicted RBP15.09■□□□□ 0.01
LDLR-201ENST00000252444 CCDC117Q8IWD4 279 aaPredicted RBP15.09■□□□□ 0.01
LDLR-201ENST00000252444 CPLX3Q8WVH0 158 aa15.09■□□□□ 0.01
LDLR-201ENST00000252444 SYMPKQ92797 1274 aaKnown RBP15.09■□□□□ 0.01
LDLR-201ENST00000252444 TRIM11Q96F44 468 aa15.09■□□□□ 0.01
LDLR-201ENST00000252444 CEP95Q96GE4 821 aa15.09■□□□□ 0.01
LDLR-201ENST00000252444 NBPF3Q9H094 633 aa15.09■□□□□ 0.01
LDLR-201ENST00000252444 MTUS1Q9ULD2 1270 aa15.09■□□□□ 0.01
LDLR-201ENST00000252444 XRCC5P13010 732 aaKnown RBP15.09■□□□□ 0.01
LDLR-201ENST00000252444 PPP2R5EQ16537 467 aa15.09■□□□□ 0.01
LDLR-201ENST00000252444 ELOA2Q8IYF1 753 aaPredicted RBP15.09■□□□□ 0.01
LDLR-201ENST00000252444 CACTINQ8WUQ7 758 aaKnown RBP15.09■□□□□ 0.01
LDLR-201ENST00000252444 IFNKQ9P0W0 207 aa15.09■□□□□ 0.01
LDLR-201ENST00000252444 CTAGE9A4FU28 777 aa15.08■□□□□ 0.01
LDLR-201ENST00000252444 WDR64B1ANS9 1081 aa15.08■□□□□ 0.01
LDLR-201ENST00000252444 TNFAIP3P21580 790 aa15.08■□□□□ 0.01
LDLR-201ENST00000252444 LRRC63Q05C16 580 aa15.08■□□□□ 0.01
LDLR-201ENST00000252444 ANKRD13AQ8IZ07 590 aa15.08■□□□□ 0.01
LDLR-201ENST00000252444 TTC39CQ8N584 583 aa15.08■□□□□ 0.01
LDLR-201ENST00000252444 C2orf40Q9H1Z8 148 aa15.08■□□□□ 0.01
LDLR-201ENST00000252444 PPME1Q9Y570 386 aa15.08■□□□□ 0.01
LDLR-201ENST00000252444 PVALEFA0A1B0GWK0 134 aa15.08■□□□□ 0
LDLR-201ENST00000252444 PSMD14O00487 310 aa15.08■□□□□ 0
LDLR-201ENST00000252444 PPFIA3O75145 1194 aa15.08■□□□□ 0
LDLR-201ENST00000252444 PRELPP51888 382 aa15.08■□□□□ 0
LDLR-201ENST00000252444 MOXD1Q6UVY6 613 aa15.08■□□□□ 0
LDLR-201ENST00000252444 ZNF280CQ8ND82 737 aa15.08■□□□□ 0
LDLR-201ENST00000252444 GMCL1P1Q8NEA9 526 aa15.08■□□□□ 0
LDLR-201ENST00000252444 RGPD8O14715 1765 aaPredicted RBP15.08■□□□□ 0
LDLR-201ENST00000252444 TNFAIP2Q03169 654 aa15.08■□□□□ 0
LDLR-201ENST00000252444 STMN4Q9H169 189 aaPredicted RBP15.08■□□□□ 0
LDLR-201ENST00000252444 VCPKMTQ9H867 229 aa15.08■□□□□ 0
LDLR-201ENST00000252444 A0A0G2JLW4 131 aa15.08■□□□□ 0
LDLR-201ENST00000252444 ZNF543Q08ER8 600 aa15.08■□□□□ 0
LDLR-201ENST00000252444 IGSF22Q8N9C0 903 aa15.08■□□□□ 0
LDLR-201ENST00000252444 THAP9Q9H5L6 903 aa15.08■□□□□ 0
LDLR-201ENST00000252444 PCDHA6Q9UN73 950 aa15.08■□□□□ 0
LDLR-201ENST00000252444 PCDHA8Q9Y5H6 950 aa15.08■□□□□ 0
LDLR-201ENST00000252444 NHSL1Q5SYE7 1610 aa15.08■□□□□ 0
LDLR-201ENST00000252444 F5H6K3 240 aa15.07■□□□□ 0
LDLR-201ENST00000252444 TM4SF1P30408 202 aa15.07■□□□□ 0
LDLR-201ENST00000252444 KLRC3Q07444 240 aa15.07■□□□□ 0
LDLR-201ENST00000252444 GRM1Q13255 1194 aa15.07■□□□□ 0
LDLR-201ENST00000252444 PDIA5Q14554 519 aa15.07■□□□□ 0
LDLR-201ENST00000252444 COG2Q14746 738 aa15.07■□□□□ 0
LDLR-201ENST00000252444 DCAF17Q5H9S7 520 aaPredicted RBP15.07■□□□□ 0
LDLR-201ENST00000252444 MFSD14CQ5VZR4 134 aa15.07■□□□□ 0
LDLR-201ENST00000252444 GBP6Q6ZN66 633 aa15.07■□□□□ 0
LDLR-201ENST00000252444 PROM2Q8N271 834 aa15.07■□□□□ 0
LDLR-201ENST00000252444 CCDC155Q8N6L0 562 aa15.07■□□□□ 0
LDLR-201ENST00000252444 MRFAP1L1Q96HT8 127 aa15.07■□□□□ 0
LDLR-201ENST00000252444 CRACR2AQ9BSW2 395 aa15.07■□□□□ 0
LDLR-201ENST00000252444 TMCO5BA8MYB1 307 aa15.07■□□□□ 0
LDLR-201ENST00000252444 K7ENM7 598 aa15.07■□□□□ 0
LDLR-201ENST00000252444 ARHGAP6O43182 974 aa15.07■□□□□ 0
LDLR-201ENST00000252444 TTLL4Q14679 1199 aa15.07■□□□□ 0
LDLR-201ENST00000252444 FAM102BQ5T8I3 360 aa15.07■□□□□ 0
LDLR-201ENST00000252444 ELMSAN1Q6PJG2 1045 aa15.07■□□□□ 0
LDLR-201ENST00000252444 TMCO3Q6UWJ1 677 aa15.07■□□□□ 0
LDLR-201ENST00000252444 BAG1Q99933 345 aaPredicted RBP15.07■□□□□ 0
LDLR-201ENST00000252444 TUFT1Q9NNX1 390 aa15.07■□□□□ 0
LDLR-201ENST00000252444 SNRPFP62306 86 aaKnown RBP15.07■□□□□ 0
LDLR-201ENST00000252444 CYB5R4Q7L1T6 521 aa15.07■□□□□ 0
LDLR-201ENST00000252444 SCYL3Q8IZE3 742 aa15.07■□□□□ 0
LDLR-201ENST00000252444 ATP2A1O14983 1001 aa15.07■□□□□ 0
LDLR-201ENST00000252444 KIAA0753Q2KHM9 967 aa15.07■□□□□ 0
LDLR-201ENST00000252444 IFT122Q9HBG6 1241 aa15.07■□□□□ 0
LDLR-201ENST00000252444 PKD2L1Q9P0L9 805 aa15.07■□□□□ 0
LDLR-201ENST00000252444 ARMCX3Q9UH62 379 aaPredicted RBP15.07■□□□□ 0
LDLR-201ENST00000252444 ZKSCAN5Q9Y2L8 839 aa15.07■□□□□ 0
LDLR-201ENST00000252444 ZHX2Q9Y6X8 837 aa15.07■□□□□ 0
LDLR-201ENST00000252444 ATP8B3O60423 1300 aa15.07■□□□□ 0
LDLR-201ENST00000252444 ONECUT3O60422 494 aaPredicted RBP15.07■□□□□ 0
LDLR-201ENST00000252444 ZNF75DP51815 510 aa15.07■□□□□ 0
LDLR-201ENST00000252444 PRPF6O94906 941 aaKnown RBP15.06■□□□□ 0
LDLR-201ENST00000252444 MORC3Q14149 939 aa15.06■□□□□ 0
LDLR-201ENST00000252444 FAM83BQ5T0W9 1011 aa15.06■□□□□ 0
LDLR-201ENST00000252444 RWDD2AQ9UIY3 292 aa15.06■□□□□ 0
LDLR-201ENST00000252444 TRPM3Q9HCF6 1732 aaPredicted RBP15.06■□□□□ 0
LDLR-201ENST00000252444 UBE4BO95155 1302 aa15.06■□□□□ 0
LDLR-201ENST00000252444 FCER1AP12319 257 aa15.06■□□□□ 0
LDLR-201ENST00000252444 RESP18Q5W5W9 173 aa15.06■□□□□ 0
LDLR-201ENST00000252444 CROCCP2Q86T23 111 aa15.06■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 58.9 ms