RNA–Protein interactions for RNA: ENST00000221232.9

CNOT3-201, Transcript of CCR4-NOT transcription complex subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CNOT3, Length 2,852 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT3-201ENST00000221232 BICDL2A1A5D9 508 aa16.31■□□□□ 0.2
CNOT3-201ENST00000221232 USP17L10C9JJH3 530 aa16.31■□□□□ 0.2
CNOT3-201ENST00000221232 C2CD5Q86YS7 1000 aa16.31■□□□□ 0.2
CNOT3-201ENST00000221232 KCNQ5Q9NR82 932 aa16.31■□□□□ 0.2
CNOT3-201ENST00000221232 ZNF219Q9P2Y4 722 aaPredicted RBP16.31■□□□□ 0.2
CNOT3-201ENST00000221232 A0A1W2PQC6 194 aa16.3■□□□□ 0.2
CNOT3-201ENST00000221232 CCDC151A5D8V7 595 aa16.3■□□□□ 0.2
CNOT3-201ENST00000221232 G3V3G9 751 aa16.3■□□□□ 0.2
CNOT3-201ENST00000221232 PPP1R11O60927 126 aaPredicted RBP16.3■□□□□ 0.2
CNOT3-201ENST00000221232 ENOX2Q16206 610 aaKnown RBP16.3■□□□□ 0.2
CNOT3-201ENST00000221232 BEND6Q5SZJ8 279 aaPredicted RBP16.3■□□□□ 0.2
CNOT3-201ENST00000221232 DCAF8Q5TAQ9 597 aa16.3■□□□□ 0.2
CNOT3-201ENST00000221232 CNNM4Q6P4Q7 775 aa16.3■□□□□ 0.2
CNOT3-201ENST00000221232 ZFPM1Q8IX07 1006 aa16.3■□□□□ 0.2
CNOT3-201ENST00000221232 CERS5Q8N5B7 392 aa16.3■□□□□ 0.2
CNOT3-201ENST00000221232 LARP4BQ92615 738 aaKnown RBP16.3■□□□□ 0.2
CNOT3-201ENST00000221232 ZHX3Q9H4I2 956 aa16.3■□□□□ 0.2
CNOT3-201ENST00000221232 POLD4Q9HCU8 107 aa16.3■□□□□ 0.2
CNOT3-201ENST00000221232 JADE2Q9NQC1 790 aa16.3■□□□□ 0.2
CNOT3-201ENST00000221232 IPO7O95373 1038 aaKnown RBP16.3■□□□□ 0.2
CNOT3-201ENST00000221232 DDR1Q08345 913 aa16.3■□□□□ 0.2
CNOT3-201ENST00000221232 FKBP15Q5T1M5 1219 aa16.3■□□□□ 0.2
CNOT3-201ENST00000221232 DDX12PQ92771 950 aa16.3■□□□□ 0.2
CNOT3-201ENST00000221232 RIOX1Q9H6W3 641 aa16.3■□□□□ 0.2
CNOT3-201ENST00000221232 JMJD4Q9H9V9 463 aa16.3■□□□□ 0.2
CNOT3-201ENST00000221232 DLEC1Q9Y238 1755 aa16.3■□□□□ 0.2
CNOT3-201ENST00000221232 USP17L15C9J2P7 530 aa16.29■□□□□ 0.2
CNOT3-201ENST00000221232 USP17L13C9JLJ4 530 aa16.29■□□□□ 0.2
CNOT3-201ENST00000221232 USP17L11C9JVI0 530 aa16.29■□□□□ 0.2
CNOT3-201ENST00000221232 USP17L18D6R9N7 530 aa16.29■□□□□ 0.2
CNOT3-201ENST00000221232 USP17L22D6RA61 530 aa16.29■□□□□ 0.2
CNOT3-201ENST00000221232 USP17L17D6RBQ6 530 aa16.29■□□□□ 0.2
CNOT3-201ENST00000221232 USP17L19D6RCP7 530 aa16.29■□□□□ 0.2
CNOT3-201ENST00000221232 USP17L20D6RJB6 530 aa16.29■□□□□ 0.2
CNOT3-201ENST00000221232 USP17L24Q0WX57 530 aa16.29■□□□□ 0.2
CNOT3-201ENST00000221232 TMEM266Q2M3C6 531 aa16.29■□□□□ 0.2
CNOT3-201ENST00000221232 USP17L6PQ6QN14 398 aa16.29■□□□□ 0.2
CNOT3-201ENST00000221232 CCDC42Q96M95 316 aa16.29■□□□□ 0.2
CNOT3-201ENST00000221232 MTMR9Q96QG7 549 aa16.29■□□□□ 0.2
CNOT3-201ENST00000221232 HAUS4Q9H6D7 363 aa16.29■□□□□ 0.2
CNOT3-201ENST00000221232 NPHP3-ACAD11A0A0J9YXS1 232 aa16.29■□□□□ 0.2
CNOT3-201ENST00000221232 MYL1P05976 194 aa16.29■□□□□ 0.2
CNOT3-201ENST00000221232 AMPD2Q01433 879 aa16.29■□□□□ 0.2
CNOT3-201ENST00000221232 NFIAQ12857 509 aa16.29■□□□□ 0.2
CNOT3-201ENST00000221232 BRD3Q15059 726 aa16.29■□□□□ 0.2
CNOT3-201ENST00000221232 NELFCDQ8IXH7 590 aa16.29■□□□□ 0.2
CNOT3-201ENST00000221232 CAGE1Q8TC20 777 aa16.29■□□□□ 0.2
CNOT3-201ENST00000221232 CCDC88AQ3V6T2 1871 aa16.29■□□□□ 0.2
CNOT3-201ENST00000221232 RGL2O15211 777 aa16.28■□□□□ 0.2
CNOT3-201ENST00000221232 TAL1P17542 331 aaPredicted RBP16.28■□□□□ 0.2
CNOT3-201ENST00000221232 CYLC1P35663 651 aaPredicted RBP16.28■□□□□ 0.2
CNOT3-201ENST00000221232 APBA1Q02410 837 aa16.28■□□□□ 0.2
CNOT3-201ENST00000221232 WHAMMP3Q1A5X7 153 aa16.28■□□□□ 0.2
CNOT3-201ENST00000221232 KRT79Q5XKE5 535 aa16.28■□□□□ 0.2
CNOT3-201ENST00000221232 RRAGAQ7L523 313 aa16.28■□□□□ 0.2
CNOT3-201ENST00000221232 CASZ1Q86V15 1759 aa16.28■□□□□ 0.2
CNOT3-201ENST00000221232 SLF2Q8IX21 1173 aa16.28■□□□□ 0.2
CNOT3-201ENST00000221232 ZC3H12CQ9C0D7 883 aaKnown RBP16.28■□□□□ 0.2
CNOT3-201ENST00000221232 CUEDC2Q9H467 287 aa16.28■□□□□ 0.2
CNOT3-201ENST00000221232 SAR1BQ9Y6B6 198 aa16.28■□□□□ 0.2
CNOT3-201ENST00000221232 ZNF263O14978 683 aa16.28■□□□□ 0.2
CNOT3-201ENST00000221232 BBOX1O75936 387 aa16.28■□□□□ 0.2
CNOT3-201ENST00000221232 KRT83P78385 493 aa16.28■□□□□ 0.2
CNOT3-201ENST00000221232 ZBED6P86452 979 aa16.28■□□□□ 0.2
CNOT3-201ENST00000221232 CRY2Q49AN0 593 aa16.28■□□□□ 0.2
CNOT3-201ENST00000221232 GSPT2Q8IYD1 628 aaKnown RBP16.28■□□□□ 0.2
CNOT3-201ENST00000221232 FNBP4Q8N3X1 1017 aaPredicted RBP16.28■□□□□ 0.2
CNOT3-201ENST00000221232 TTYH3Q9C0H2 523 aa16.28■□□□□ 0.2
CNOT3-201ENST00000221232 DEF6Q9H4E7 631 aa16.28■□□□□ 0.2
CNOT3-201ENST00000221232 MLXIPQ9HAP2 919 aa16.28■□□□□ 0.2
CNOT3-201ENST00000221232 VPS18Q9P253 973 aa16.28■□□□□ 0.2
CNOT3-201ENST00000221232 MATR3P43243 847 aaKnown RBP eCLIP16.28■□□□□ 0.21e-6■■■■■ 28.9
CNOT3-201ENST00000221232 DNA2P51530 1060 aa16.28■□□□□ 0.2
CNOT3-201ENST00000221232 SEPT12Q8IYM1 358 aa16.28■□□□□ 0.2
CNOT3-201ENST00000221232 CCDC102AQ96A19 550 aa16.28■□□□□ 0.2
CNOT3-201ENST00000221232 CRACR2AQ9BSW2 395 aa16.28■□□□□ 0.2
CNOT3-201ENST00000221232 FGFBP2Q9BYJ0 223 aa16.28■□□□□ 0.2
CNOT3-201ENST00000221232 NDST4Q9H3R1 872 aa16.28■□□□□ 0.2
CNOT3-201ENST00000221232 NLRC4Q9NPP4 1024 aa16.28■□□□□ 0.2
CNOT3-201ENST00000221232 DDX25Q9UHL0 483 aaKnown RBP16.28■□□□□ 0.2
CNOT3-201ENST00000221232 SERPINB13Q9UIV8 391 aa16.28■□□□□ 0.2
CNOT3-201ENST00000221232 KRT86O43790 486 aa16.27■□□□□ 0.2
CNOT3-201ENST00000221232 CXCR5P32302 372 aa16.27■□□□□ 0.2
CNOT3-201ENST00000221232 VWA3BQ502W6 1294 aa16.27■□□□□ 0.2
CNOT3-201ENST00000221232 FAM114A1Q8IWE2 563 aa16.27■□□□□ 0.2
CNOT3-201ENST00000221232 NOC3LQ8WTT2 800 aaKnown RBP16.27■□□□□ 0.2
CNOT3-201ENST00000221232 GJD4Q96KN9 370 aaPredicted RBP16.27■□□□□ 0.2
CNOT3-201ENST00000221232 SMARCAL1Q9NZC9 954 aa16.27■□□□□ 0.2
CNOT3-201ENST00000221232 ZKSCAN7Q9P0L1 754 aaPredicted RBP16.27■□□□□ 0.2
CNOT3-201ENST00000221232 LAMB1P07942 1786 aa16.27■□□□□ 0.19
CNOT3-201ENST00000221232 E9PMD0 336 aa16.27■□□□□ 0.19
CNOT3-201ENST00000221232 TTLL1O95922 423 aa16.27■□□□□ 0.19
CNOT3-201ENST00000221232 CYP2C19P33261 490 aa16.27■□□□□ 0.19
CNOT3-201ENST00000221232 TNNT3P45378 269 aaPredicted RBP16.27■□□□□ 0.19
CNOT3-201ENST00000221232 RBM5P52756 815 aaKnown RBP eCLIP16.27■□□□□ 0.19
CNOT3-201ENST00000221232 MAPK8IP2Q13387 824 aaPredicted RBP16.27■□□□□ 0.19
CNOT3-201ENST00000221232 ZSCAN29Q8IWY8 852 aaPredicted RBP16.27■□□□□ 0.19
CNOT3-201ENST00000221232 TBC1D22AQ8WUA7 517 aa16.27■□□□□ 0.19
CNOT3-201ENST00000221232 PPEF1O14829 653 aaPredicted RBP16.26■□□□□ 0.19
CNOT3-201ENST00000221232 ATP8B1O43520 1251 aa16.26■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms