RNA–Protein interactions for RNA: ENST00000216877.10

PTPRA-201, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRA, Length 3,725 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-201ENST00000216877 PTPREP23469 700 aa16.13■□□□□ 0.17
PTPRA-201ENST00000216877 CDC37Q16543 378 aaPredicted RBP16.13■□□□□ 0.17
PTPRA-201ENST00000216877 ZKSCAN3Q9BRR0 538 aa16.13■□□□□ 0.17
PTPRA-201ENST00000216877 CNOT8Q9UFF9 292 aaKnown RBP16.13■□□□□ 0.17
PTPRA-201ENST00000216877 SWAP70Q9UH65 585 aa16.13■□□□□ 0.17
PTPRA-201ENST00000216877 MAST3O60307 1309 aa16.13■□□□□ 0.17
PTPRA-201ENST00000216877 ROR2Q01974 943 aaKnown RBP16.12■□□□□ 0.17
PTPRA-201ENST00000216877 MFN1Q8IWA4 741 aa16.12■□□□□ 0.17
PTPRA-201ENST00000216877 MB21D1Q8N884 522 aa16.12■□□□□ 0.17
PTPRA-201ENST00000216877 CCT6BQ92526 530 aa16.12■□□□□ 0.17
PTPRA-201ENST00000216877 CCDC85AQ96PX6 553 aaPredicted RBP16.12■□□□□ 0.17
PTPRA-201ENST00000216877 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP16.12■□□□□ 0.17
PTPRA-201ENST00000216877 EBF2Q9HAK2 575 aa16.12■□□□□ 0.17
PTPRA-201ENST00000216877 SENP2Q9HC62 589 aa16.12■□□□□ 0.17
PTPRA-201ENST00000216877 SLC12A7Q9Y666 1083 aa16.12■□□□□ 0.17
PTPRA-201ENST00000216877 SPDYE3A6NKU9 549 aa16.12■□□□□ 0.17
PTPRA-201ENST00000216877 M0R2C6 588 aa16.12■□□□□ 0.17
PTPRA-201ENST00000216877 MMEP08473 750 aa16.12■□□□□ 0.17
PTPRA-201ENST00000216877 CHADLQ6NUI6 762 aa16.12■□□□□ 0.17
PTPRA-201ENST00000216877 ADAMTS2O95450 1211 aa16.12■□□□□ 0.17
PTPRA-201ENST00000216877 CDKAL1Q5VV42 579 aa16.12■□□□□ 0.17
PTPRA-201ENST00000216877 CAVIN3Q969G5 261 aa16.12■□□□□ 0.17
PTPRA-201ENST00000216877 DDX23Q9BUQ8 820 aaKnown RBP16.12■□□□□ 0.17
PTPRA-201ENST00000216877 PNMA2Q9UL42 364 aa16.12■□□□□ 0.17
PTPRA-201ENST00000216877 PPP1R3GB7ZBB8 358 aa16.11■□□□□ 0.17
PTPRA-201ENST00000216877 IFIT3O14879 490 aaKnown RBP16.11■□□□□ 0.17
PTPRA-201ENST00000216877 ACTN4O43707 911 aaKnown RBP16.11■□□□□ 0.17
PTPRA-201ENST00000216877 DNAJC8O75937 253 aaPredicted RBP16.11■□□□□ 0.17
PTPRA-201ENST00000216877 UBOX5O94941 541 aa16.11■□□□□ 0.17
PTPRA-201ENST00000216877 SARSP49591 514 aaKnown RBP16.11■□□□□ 0.17
PTPRA-201ENST00000216877 SLMAPQ14BN4 828 aa16.11■□□□□ 0.17
PTPRA-201ENST00000216877 TANGO6Q9C0B7 1094 aa16.11■□□□□ 0.17
PTPRA-201ENST00000216877 TMBIM4Q9HC24 238 aa16.11■□□□□ 0.17
PTPRA-201ENST00000216877 FBXO2Q9UK22 296 aaPredicted RBP16.11■□□□□ 0.17
PTPRA-201ENST00000216877 RGPD5Q99666 1765 aa16.11■□□□□ 0.17
PTPRA-201ENST00000216877 RNF113AO15541 343 aaKnown RBP16.11■□□□□ 0.17
PTPRA-201ENST00000216877 HSD17B3P37058 310 aa16.11■□□□□ 0.17
PTPRA-201ENST00000216877 BLMHQ13867 455 aa16.11■□□□□ 0.17
PTPRA-201ENST00000216877 SOGA3Q5TF21 947 aa16.11■□□□□ 0.17
PTPRA-201ENST00000216877 LINS1Q8NG48 757 aa16.11■□□□□ 0.17
PTPRA-201ENST00000216877 HAUS7Q99871 368 aa16.11■□□□□ 0.17
PTPRA-201ENST00000216877 MLXIPLQ9NP71 852 aa16.11■□□□□ 0.17
PTPRA-201ENST00000216877 ABCF3Q9NUQ8 709 aa16.11■□□□□ 0.17
PTPRA-201ENST00000216877 ANGEL1Q9UNK9 670 aaKnown RBP16.11■□□□□ 0.17
PTPRA-201ENST00000216877 TRIM75PA6NK02 468 aa16.11■□□□□ 0.17
PTPRA-201ENST00000216877 FESP07332 822 aa16.11■□□□□ 0.17
PTPRA-201ENST00000216877 RAD23BP54727 409 aa16.11■□□□□ 0.17
PTPRA-201ENST00000216877 CUL4BQ13620 913 aa16.11■□□□□ 0.17
PTPRA-201ENST00000216877 RASIP1Q5U651 963 aa16.11■□□□□ 0.17
PTPRA-201ENST00000216877 OSBP2Q969R2 916 aa16.11■□□□□ 0.17
PTPRA-201ENST00000216877 HELLSQ9NRZ9 838 aa16.11■□□□□ 0.17
PTPRA-201ENST00000216877 FBXL5Q9UKA1 691 aa16.11■□□□□ 0.17
PTPRA-201ENST00000216877 PCDHA13Q9Y5I0 950 aa16.11■□□□□ 0.17
PTPRA-201ENST00000216877 GUCY1A2P33402 732 aa16.1■□□□□ 0.17
PTPRA-201ENST00000216877 SLCO1A2P46721 670 aa16.1■□□□□ 0.17
PTPRA-201ENST00000216877 CCDC38Q502W7 563 aa16.1■□□□□ 0.17
PTPRA-201ENST00000216877 WDR59Q6PJI9 974 aa16.1■□□□□ 0.17
PTPRA-201ENST00000216877 TRPM8Q7Z2W7 1104 aa16.1■□□□□ 0.17
PTPRA-201ENST00000216877 RETREG2Q8NC44 543 aa16.1■□□□□ 0.17
PTPRA-201ENST00000216877 FAM81AQ8TBF8 368 aa16.1■□□□□ 0.17
PTPRA-201ENST00000216877 LRRC45Q96CN5 670 aa16.1■□□□□ 0.17
PTPRA-201ENST00000216877 AP1M1Q9BXS5 423 aa16.1■□□□□ 0.17
PTPRA-201ENST00000216877 EIF4ENIF1Q9NRA8 985 aaKnown RBP16.1■□□□□ 0.17
PTPRA-201ENST00000216877 RHBDL2Q9NX52 303 aa16.1■□□□□ 0.17
PTPRA-201ENST00000216877 TRIM33Q9UPN9 1127 aa16.1■□□□□ 0.17
PTPRA-201ENST00000216877 ATP8A1Q9Y2Q0 1164 aa16.1■□□□□ 0.17
PTPRA-201ENST00000216877 NQO1P15559 274 aaKnown RBP16.1■□□□□ 0.17
PTPRA-201ENST00000216877 IGHMBP2P38935 993 aaKnown RBP16.1■□□□□ 0.17
PTPRA-201ENST00000216877 CCDC6Q16204 474 aa16.1■□□□□ 0.17
PTPRA-201ENST00000216877 RILPL1Q5EBL4 403 aa16.1■□□□□ 0.17
PTPRA-201ENST00000216877 RNF220Q5VTB9 566 aa16.1■□□□□ 0.17
PTPRA-201ENST00000216877 CACNA2D4Q7Z3S7 1137 aa16.1■□□□□ 0.17
PTPRA-201ENST00000216877 KDM4CQ9H3R0 1056 aa16.1■□□□□ 0.17
PTPRA-201ENST00000216877 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP16.1■□□□□ 0.17
PTPRA-201ENST00000216877 FAM205CA6NFA0 338 aa16.1■□□□□ 0.17
PTPRA-201ENST00000216877 CEP104O60308 925 aa16.1■□□□□ 0.17
PTPRA-201ENST00000216877 CCND1P24385 295 aa16.1■□□□□ 0.17
PTPRA-201ENST00000216877 EIF4A3P38919 411 aaKnown RBP16.1■□□□□ 0.17
PTPRA-201ENST00000216877 RFC5P40937 340 aa16.1■□□□□ 0.17
PTPRA-201ENST00000216877 EIF4A1P60842 406 aaKnown RBP16.1■□□□□ 0.17
PTPRA-201ENST00000216877 SEPT14Q6ZU15 432 aa16.1■□□□□ 0.17
PTPRA-201ENST00000216877 OXER1Q8TDS5 423 aa16.1■□□□□ 0.17
PTPRA-201ENST00000216877 MUM1Q2TAK8 710 aa16.09■□□□□ 0.17
PTPRA-201ENST00000216877 ZMYM1Q5SVZ6 1142 aa16.09■□□□□ 0.17
PTPRA-201ENST00000216877 GIGYF2Q6Y7W6 1299 aaKnown RBP16.09■□□□□ 0.17
PTPRA-201ENST00000216877 LRRC34Q8IZ02 419 aa16.09■□□□□ 0.17
PTPRA-201ENST00000216877 TBX22Q9Y458 520 aa16.09■□□□□ 0.17
PTPRA-201ENST00000216877 TNNC1P63316 161 aa16.09■□□□□ 0.17
PTPRA-201ENST00000216877 DHX9Q08211 1270 aaKnown RBP16.09■□□□□ 0.17
PTPRA-201ENST00000216877 LRRC14Q15048 493 aa16.09■□□□□ 0.17
PTPRA-201ENST00000216877 NOX5Q96PH1 765 aa16.09■□□□□ 0.17
PTPRA-201ENST00000216877 XPO6Q96QU8 1125 aaKnown RBP16.09■□□□□ 0.17
PTPRA-201ENST00000216877 INTS9Q9NV88 658 aaKnown RBP16.09■□□□□ 0.17
PTPRA-201ENST00000216877 SLC5A4Q9NY91 659 aa16.09■□□□□ 0.17
PTPRA-201ENST00000216877 SHANK3Q9BYB0 1731 aa16.09■□□□□ 0.17
PTPRA-201ENST00000216877 ITIH6Q6UXX5 1313 aa16.09■□□□□ 0.17
PTPRA-201ENST00000216877 FAM208AQ9UK61 1670 aaKnown RBP16.09■□□□□ 0.17
PTPRA-201ENST00000216877 A0A087X0B3 334 aa16.09■□□□□ 0.17
PTPRA-201ENST00000216877 PPIP5K2O43314 1243 aa16.09■□□□□ 0.17
PTPRA-201ENST00000216877 RAD51CO43502 376 aa16.09■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms