RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 RWDD1Q9H446 243 aaPredicted RBP5.87□□□□□ -1.47
SCN1A-220ENST00000641603 SLC4A1APQ9BWU0 796 aaKnown RBP5.87□□□□□ -1.47
SCN1A-220ENST00000641603 ATP6V1DQ9Y5K8 247 aa5.86□□□□□ -1.47
SCN1A-220ENST00000641603 C11orf95C9JLR9 678 aaPredicted RBP5.86□□□□□ -1.47
SCN1A-220ENST00000641603 CALD1Q05682 793 aaKnown RBP5.86□□□□□ -1.47
SCN1A-220ENST00000641603 FTSJ3Q8IY81 847 aaKnown RBP5.86□□□□□ -1.47
SCN1A-220ENST00000641603 CHMP4CQ96CF2 233 aa5.86□□□□□ -1.47
SCN1A-220ENST00000641603 PDCL3Q9H2J4 239 aa5.86□□□□□ -1.47
SCN1A-220ENST00000641603 KIF16BQ96L93 1317 aa5.86□□□□□ -1.47
SCN1A-220ENST00000641603 ABCC9O60706 1549 aa5.86□□□□□ -1.47
SCN1A-220ENST00000641603 PDE4AP27815 886 aa5.85□□□□□ -1.47
SCN1A-220ENST00000641603 RCAN3Q9UKA8 241 aa5.85□□□□□ -1.47
SCN1A-220ENST00000641603 ZNF771Q7L3S4 317 aaPredicted RBP5.85□□□□□ -1.47
SCN1A-220ENST00000641603 CCDC39Q9UFE4 941 aa5.85□□□□□ -1.47
SCN1A-220ENST00000641603 TPM4P67936 248 aa5.85□□□□□ -1.47
SCN1A-220ENST00000641603 GOLGA6L4A6NEF3 574 aa5.84□□□□□ -1.47
SCN1A-220ENST00000641603 CCDC173Q0VFZ6 552 aa5.84□□□□□ -1.47
SCN1A-220ENST00000641603 KNSTRNQ9Y448 316 aa5.84□□□□□ -1.47
SCN1A-220ENST00000641603 USP8P40818 1118 aa5.84□□□□□ -1.47
SCN1A-220ENST00000641603 CGNL1Q0VF96 1302 aa5.84□□□□□ -1.47
SCN1A-220ENST00000641603 APPP05067 770 aa5.84□□□□□ -1.47
SCN1A-220ENST00000641603 IL27Q8NEV9 243 aa5.84□□□□□ -1.47
SCN1A-220ENST00000641603 CHMP5Q9NZZ3 219 aa5.84□□□□□ -1.47
SCN1A-220ENST00000641603 ARGLU1Q9NWB6 273 aaPredicted RBP5.84□□□□□ -1.48
SCN1A-220ENST00000641603 NINLQ9Y2I6 1382 aa5.83□□□□□ -1.48
SCN1A-220ENST00000641603 ACBD3Q9H3P7 528 aa5.83□□□□□ -1.48
SCN1A-220ENST00000641603 KIF3AQ9Y496 699 aa5.83□□□□□ -1.48
SCN1A-220ENST00000641603 IPO8O15397 1037 aaKnown RBP5.83□□□□□ -1.48
SCN1A-220ENST00000641603 BAZ1AQ9NRL2 1556 aaPredicted RBP5.83□□□□□ -1.48
SCN1A-220ENST00000641603 MCM5P33992 734 aa5.83□□□□□ -1.48
SCN1A-220ENST00000641603 CCDC34Q96HJ3 373 aa5.83□□□□□ -1.48
SCN1A-220ENST00000641603 CHMP4AQ9BY43 222 aa5.83□□□□□ -1.48
SCN1A-220ENST00000641603 RGS3P49796 1198 aa5.82□□□□□ -1.48
SCN1A-220ENST00000641603 KIF27Q86VH2 1401 aa5.82□□□□□ -1.48
SCN1A-220ENST00000641603 ANKRD30AQ9BXX3 1397 aa5.82□□□□□ -1.48
SCN1A-220ENST00000641603 FMN1Q68DA7 1419 aa5.81□□□□□ -1.48
SCN1A-220ENST00000641603 LETM1O95202 739 aaPredicted RBP5.81□□□□□ -1.48
SCN1A-220ENST00000641603 DRC7Q8IY82 874 aa5.81□□□□□ -1.48
SCN1A-220ENST00000641603 ARHGAP35Q9NRY4 1499 aa5.81□□□□□ -1.48
SCN1A-220ENST00000641603 KIF15Q9NS87 1388 aa5.81□□□□□ -1.48
SCN1A-220ENST00000641603 HMGB1P09429 215 aaKnown RBP5.8□□□□□ -1.48
SCN1A-220ENST00000641603 PPP1R15AO75807 674 aaPredicted RBP5.8□□□□□ -1.48
SCN1A-220ENST00000641603 ANO8Q9HCE9 1232 aaPredicted RBP5.8□□□□□ -1.48
SCN1A-220ENST00000641603 NFKBIBQ15653 356 aa5.8□□□□□ -1.48
SCN1A-220ENST00000641603 RNF20Q5VTR2 975 aa5.8□□□□□ -1.48
SCN1A-220ENST00000641603 NLRP13Q86W25 1043 aa5.8□□□□□ -1.48
SCN1A-220ENST00000641603 ST18O60284 1047 aa5.8□□□□□ -1.48
SCN1A-220ENST00000641603 CIZ1Q9ULV3 898 aaPredicted RBP5.8□□□□□ -1.48
SCN1A-220ENST00000641603 DHX57Q6P158 1386 aaKnown RBP5.79□□□□□ -1.48
SCN1A-220ENST00000641603 CCP110O43303 1012 aa5.79□□□□□ -1.48
SCN1A-220ENST00000641603 NUCB2P80303 420 aa5.79□□□□□ -1.48
SCN1A-220ENST00000641603 CCDC70Q6NSX1 233 aa5.79□□□□□ -1.48
SCN1A-220ENST00000641603 PDIA4P13667 645 aaKnown RBP5.79□□□□□ -1.48
SCN1A-220ENST00000641603 CREBRFQ8IUR6 639 aa5.79□□□□□ -1.48
SCN1A-220ENST00000641603 MBD3O95983 291 aa5.78□□□□□ -1.48
SCN1A-220ENST00000641603 RRP1P56182 461 aaKnown RBP5.78□□□□□ -1.48
SCN1A-220ENST00000641603 CALCOCO1Q9P1Z2 691 aa5.78□□□□□ -1.48
SCN1A-220ENST00000641603 FAM107BQ9H098 131 aa5.78□□□□□ -1.48
SCN1A-220ENST00000641603 FAM13BQ9NYF5 915 aa5.78□□□□□ -1.48
SCN1A-220ENST00000641603 HDAC5Q9UQL6 1122 aa5.78□□□□□ -1.48
SCN1A-220ENST00000641603 TERF1P54274 439 aa5.77□□□□□ -1.48
SCN1A-220ENST00000641603 CNTLNQ9NXG0 1405 aa5.77□□□□□ -1.49
SCN1A-220ENST00000641603 PDE4CQ08493 712 aa5.77□□□□□ -1.49
SCN1A-220ENST00000641603 CTR9Q6PD62 1173 aa5.77□□□□□ -1.49
SCN1A-220ENST00000641603 SALL2Q9Y467 1007 aaPredicted RBP5.77□□□□□ -1.49
SCN1A-220ENST00000641603 MYBBP1AQ9BQG0 1328 aaKnown RBP5.77□□□□□ -1.49
SCN1A-220ENST00000641603 DDX49Q9Y6V7 483 aaKnown RBP5.77□□□□□ -1.49
SCN1A-220ENST00000641603 ZSCAN30Q86W11 494 aa5.77□□□□□ -1.49
SCN1A-220ENST00000641603 AK7Q96M32 723 aa5.77□□□□□ -1.49
SCN1A-220ENST00000641603 CARD11Q9BXL7 1154 aa5.77□□□□□ -1.49
SCN1A-220ENST00000641603 KIF2AO00139 706 aaPredicted RBP5.77□□□□□ -1.49
SCN1A-220ENST00000641603 ERCC4Q92889 916 aaPredicted RBP5.77□□□□□ -1.49
SCN1A-220ENST00000641603 SLKQ9H2G2 1235 aaPredicted RBP5.77□□□□□ -1.49
SCN1A-220ENST00000641603 HS1BP3Q53T59 392 aa5.77□□□□□ -1.49
SCN1A-220ENST00000641603 ESPNB1AK53 854 aa5.76□□□□□ -1.49
SCN1A-220ENST00000641603 FAM184AQ8NB25 1140 aa5.76□□□□□ -1.49
SCN1A-220ENST00000641603 CDR1P51861 262 aa5.76□□□□□ -1.49
SCN1A-220ENST00000641603 TSPY4P0CV99 314 aa5.76□□□□□ -1.49
SCN1A-220ENST00000641603 TSPY10P0CW01 314 aa5.76□□□□□ -1.49
SCN1A-220ENST00000641603 AXDND1Q5T1B0 1012 aaPredicted RBP5.76□□□□□ -1.49
SCN1A-220ENST00000641603 NACADO15069 1562 aa5.76□□□□□ -1.49
SCN1A-220ENST00000641603 DYNC1I1O14576 645 aa5.76□□□□□ -1.49
SCN1A-220ENST00000641603 TMF1P82094 1093 aa5.76□□□□□ -1.49
SCN1A-220ENST00000641603 RAB3GAP2Q9H2M9 1393 aa5.76□□□□□ -1.49
SCN1A-220ENST00000641603 GOLGA2Q08379 1002 aa5.75□□□□□ -1.49
SCN1A-220ENST00000641603 GTPBP4Q9BZE4 634 aaKnown RBP5.75□□□□□ -1.49
SCN1A-220ENST00000641603 HSP90B2PQ58FF3 399 aa5.75□□□□□ -1.49
SCN1A-220ENST00000641603 NASPP49321 788 aaPredicted RBP5.75□□□□□ -1.49
SCN1A-220ENST00000641603 PLCB2Q00722 1185 aa5.75□□□□□ -1.49
SCN1A-220ENST00000641603 SMG6Q86US8 1419 aaKnown RBP5.75□□□□□ -1.49
SCN1A-220ENST00000641603 PES1O00541 588 aaKnown RBP5.75□□□□□ -1.49
SCN1A-220ENST00000641603 DNAJC2Q99543 621 aaKnown RBP5.75□□□□□ -1.49
SCN1A-220ENST00000641603 GZF1Q9H116 711 aaPredicted RBP5.75□□□□□ -1.49
SCN1A-220ENST00000641603 PLEKHH2Q8IVE3 1493 aa5.75□□□□□ -1.49
SCN1A-220ENST00000641603 CLCN1P35523 988 aa5.75□□□□□ -1.49
SCN1A-220ENST00000641603 SCRIBQ14160 1630 aa5.75□□□□□ -1.49
SCN1A-220ENST00000641603 HSPA5P11021 654 aaKnown RBP5.74□□□□□ -1.49
SCN1A-220ENST00000641603 PRKRIP1Q9H875 184 aaPredicted RBP5.74□□□□□ -1.49
SCN1A-220ENST00000641603 KIF20AO95235 890 aa5.74□□□□□ -1.49
SCN1A-220ENST00000641603 FAM193AP78312 1265 aa5.74□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms