RNA–Protein interactions for RNA: ENST00000639496.1

KCNQ3-208, Transcript of potassium voltage-gated channel subfamily Q member 3, human

TSL 5

Gene KCNQ3, Length 4,943 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
KCNQ3-208	ENST00000639496	CCDC9	Q9Y3X0	531 aa	Known RBP	13.18	□□□□□ -0.3
KCNQ3-208	ENST00000639496	TRIM44	Q96DX7	344 aa	Predicted RBP	13.17	□□□□□ -0.3
KCNQ3-208	ENST00000639496	NUP155	O75694	1391 aa		13.16	□□□□□ -0.3
KCNQ3-208	ENST00000639496	SPAG9	O60271	1321 aa	Known RBP	13.16	□□□□□ -0.3
KCNQ3-208	ENST00000639496	ARHGAP35	Q9NRY4	1499 aa		13.16	□□□□□ -0.3
KCNQ3-208	ENST00000639496	CFAP44	Q96MT7	982 aa		13.15	□□□□□ -0.3
KCNQ3-208	ENST00000639496	WASHC2C	Q9Y4E1	1318 aa		13.15	□□□□□ -0.3
KCNQ3-208	ENST00000639496	NAP1L2	Q9ULW6	460 aa	Predicted RBP	13.15	□□□□□ -0.3
KCNQ3-208	ENST00000639496	IPO8	O15397	1037 aa	Known RBP	13.14	□□□□□ -0.31
KCNQ3-208	ENST00000639496	RGS3	P49796	1198 aa		13.14	□□□□□ -0.31
KCNQ3-208	ENST00000639496	JPH4	Q96JJ6	628 aa		13.14	□□□□□ -0.31
KCNQ3-208	ENST00000639496	TERF2IP	Q9NYB0	399 aa		13.14	□□□□□ -0.31
KCNQ3-208	ENST00000639496	SUPT16H	Q9Y5B9	1047 aa	Known RBP	13.14	□□□□□ -0.31
KCNQ3-208	ENST00000639496	HDAC5	Q9UQL6	1122 aa		13.14	□□□□□ -0.31
KCNQ3-208	ENST00000639496	PTMA	P06454	111 aa	Known RBP	13.13	□□□□□ -0.31
KCNQ3-208	ENST00000639496	NGDN	Q8NEJ9	315 aa	Known RBP	13.13	□□□□□ -0.31
KCNQ3-208	ENST00000639496	CADPS	Q9ULU8	1353 aa		13.12	□□□□□ -0.31
KCNQ3-208	ENST00000639496	ZNF330	Q9Y3S2	320 aa	Predicted RBP	13.12	□□□□□ -0.31
KCNQ3-208	ENST00000639496	ISY1	Q9ULR0	285 aa	Known RBP	13.12	□□□□□ -0.31
KCNQ3-208	ENST00000639496	U2AF1L5	P0DN76	240 aa	Predicted RBP	13.12	□□□□□ -0.31
KCNQ3-208	ENST00000639496	U2AF1	Q01081	240 aa	Known RBP eCLIP	13.12	□□□□□ -0.31
KCNQ3-208	ENST00000639496	TAOK2	Q9UL54	1235 aa		13.12	□□□□□ -0.31
KCNQ3-208	ENST00000639496	SETD5	Q9C0A6	1442 aa		13.11	□□□□□ -0.31
KCNQ3-208	ENST00000639496	MCC	P23508	829 aa		13.11	□□□□□ -0.31
KCNQ3-208	ENST00000639496	EIF3A	Q14152	1382 aa	Known RBP	13.11	□□□□□ -0.31
KCNQ3-208	ENST00000639496	NRDC	O43847	1150 aa		13.1	□□□□□ -0.31
KCNQ3-208	ENST00000639496	KTN1	Q86UP2	1357 aa	Known RBP	13.1	□□□□□ -0.31
KCNQ3-208	ENST00000639496	GLIPR1L2	Q4G1C9	344 aa		13.09	□□□□□ -0.31
KCNQ3-208	ENST00000639496	GOLGA6L4	A6NEF3	574 aa		13.09	□□□□□ -0.31
KCNQ3-208	ENST00000639496	PPP4R2	Q9NY27	417 aa		13.09	□□□□□ -0.31
KCNQ3-208	ENST00000639496	VPS8	Q8N3P4	1428 aa		13.09	□□□□□ -0.31
KCNQ3-208	ENST00000639496	OSCAR	Q8IYS5	282 aa		13.08	□□□□□ -0.31
KCNQ3-208	ENST00000639496	STK31	Q9BXU1	1019 aa		13.08	□□□□□ -0.32
KCNQ3-208	ENST00000639496	MPHOSPH9	Q99550	1183 aa		13.08	□□□□□ -0.32
KCNQ3-208	ENST00000639496	ROCK2	O75116	1388 aa	Known RBP	13.07	□□□□□ -0.32
KCNQ3-208	ENST00000639496	HSP90AB1	P08238	724 aa	Known RBP	13.07	□□□□□ -0.32
KCNQ3-208	ENST00000639496	CYB5RL	Q6IPT4	315 aa		13.07	□□□□□ -0.32
KCNQ3-208	ENST00000639496	GOLGA6L6	A8MZA4	724 aa		13.06	□□□□□ -0.32
KCNQ3-208	ENST00000639496	HNRNPM	P52272	730 aa	Known RBP eCLIP	13.06	□□□□□ -0.32
KCNQ3-208	ENST00000639496	TPRN	Q4KMQ1	711 aa		13.06	□□□□□ -0.32
KCNQ3-208	ENST00000639496	CCDC88B	A6NC98	1476 aa		13.06	□□□□□ -0.32
KCNQ3-208	ENST00000639496	KIAA1211	Q6ZU35	1233 aa		13.06	□□□□□ -0.32
KCNQ3-208	ENST00000639496	HSPA5	P11021	654 aa	Known RBP	13.05	□□□□□ -0.32
KCNQ3-208	ENST00000639496	AMPH	P49418	695 aa		13.05	□□□□□ -0.32
KCNQ3-208	ENST00000639496	RALBP1	Q15311	655 aa		13.04	□□□□□ -0.32
KCNQ3-208	ENST00000639496	GORAB	Q5T7V8	394 aa		13.03	□□□□□ -0.32
KCNQ3-208	ENST00000639496	TAF7L	Q5H9L4	462 aa		13.03	□□□□□ -0.32
KCNQ3-208	ENST00000639496	FOXD1	Q16676	465 aa		13.03	□□□□□ -0.32
KCNQ3-208	ENST00000639496	CCDC18	Q5T9S5	1454 aa		13.03	□□□□□ -0.32
KCNQ3-208	ENST00000639496	GTF2E1	P29083	439 aa	Predicted RBP	13.02	□□□□□ -0.32
KCNQ3-208	ENST00000639496	LMOD3	Q0VAK6	560 aa		13.02	□□□□□ -0.32
KCNQ3-208	ENST00000639496		G3V3G9	751 aa		13.02	□□□□□ -0.33
KCNQ3-208	ENST00000639496	DCAF8	Q5TAQ9	597 aa		13.02	□□□□□ -0.33
KCNQ3-208	ENST00000639496	PLCB2	Q00722	1185 aa		13.01	□□□□□ -0.33
KCNQ3-208	ENST00000639496	CCER2	I3L3R5	266 aa		13.01	□□□□□ -0.33
KCNQ3-208	ENST00000639496	DNTTIP2	Q5QJE6	756 aa	Known RBP	13.01	□□□□□ -0.33
KCNQ3-208	ENST00000639496	KANK4	Q5T7N3	995 aa	Predicted RBP	13.01	□□□□□ -0.33
KCNQ3-208	ENST00000639496	GNL2	Q13823	731 aa	Known RBP	13	□□□□□ -0.33
KCNQ3-208	ENST00000639496	HSCB	Q8IWL3	235 aa		13	□□□□□ -0.33
KCNQ3-208	ENST00000639496	PTPRG	P23470	1445 aa		13	□□□□□ -0.33
KCNQ3-208	ENST00000639496	AEBP2	Q6ZN18	517 aa	Predicted RBP	13	□□□□□ -0.33
KCNQ3-208	ENST00000639496	VGF	O15240	615 aa	Predicted RBP	13	□□□□□ -0.33
KCNQ3-208	ENST00000639496	CLSTN1	O94985	981 aa		13	□□□□□ -0.33
KCNQ3-208	ENST00000639496	MROH2B	Q7Z745	1585 aa		12.99	□□□□□ -0.33
KCNQ3-208	ENST00000639496	RAPGEF2	Q9Y4G8	1499 aa		12.99	□□□□□ -0.33
KCNQ3-208	ENST00000639496	HMMR	O75330	724 aa		12.98	□□□□□ -0.33
KCNQ3-208	ENST00000639496	APBB1	O00213	710 aa		12.98	□□□□□ -0.33
KCNQ3-208	ENST00000639496	CHMP3	Q9Y3E7	222 aa		12.98	□□□□□ -0.33
KCNQ3-208	ENST00000639496	GPATCH3	Q96I76	525 aa		12.97	□□□□□ -0.33
KCNQ3-208	ENST00000639496	RWDD1	Q9H446	243 aa	Predicted RBP	12.97	□□□□□ -0.33
KCNQ3-208	ENST00000639496	MYO15B	Q96JP2	1530 aa		12.97	□□□□□ -0.33
KCNQ3-208	ENST00000639496	NUTM2F	A1L443	756 aa		12.96	□□□□□ -0.33
KCNQ3-208	ENST00000639496	NUTM2D	Q5VT03	806 aa	Predicted RBP	12.96	□□□□□ -0.33
KCNQ3-208	ENST00000639496	LTV1	Q96GA3	475 aa	Predicted RBP	12.96	□□□□□ -0.33
KCNQ3-208	ENST00000639496	ABCC8	Q09428	1581 aa		12.95	□□□□□ -0.34
KCNQ3-208	ENST00000639496	UACA	Q9BZF9	1416 aa		12.95	□□□□□ -0.34
KCNQ3-208	ENST00000639496	TRAK1	Q9UPV9	953 aa		12.95	□□□□□ -0.34
KCNQ3-208	ENST00000639496	EVA1C	P58658	441 aa		12.94	□□□□□ -0.34
KCNQ3-208	ENST00000639496	ITPRIP	Q8IWB1	547 aa		12.94	□□□□□ -0.34
KCNQ3-208	ENST00000639496	FRAT2	O75474	233 aa	Predicted RBP	12.93	□□□□□ -0.34
KCNQ3-208	ENST00000639496	FHOD3	Q2V2M9	1422 aa		12.93	□□□□□ -0.34
KCNQ3-208	ENST00000639496	RAB3GAP2	Q9H2M9	1393 aa		12.93	□□□□□ -0.34
KCNQ3-208	ENST00000639496	HTATSF1	O43719	755 aa	Known RBP	12.93	□□□□□ -0.34
KCNQ3-208	ENST00000639496	L1TD1	Q5T7N2	865 aa	Known RBP	12.93	□□□□□ -0.34
KCNQ3-208	ENST00000639496	SUGP2	Q8IX01	1082 aa	Known RBP eCLIP	12.93	□□□□□ -0.34
KCNQ3-208	ENST00000639496	CCDC34	Q96HJ3	373 aa		12.93	□□□□□ -0.34
KCNQ3-208	ENST00000639496	L3MBTL2	Q969R5	705 aa		12.92	□□□□□ -0.34
KCNQ3-208	ENST00000639496	ERICH6B	Q5W0A0	696 aa		12.92	□□□□□ -0.34
KCNQ3-208	ENST00000639496	SMC4	Q9NTJ3	1288 aa		12.92	□□□□□ -0.34
KCNQ3-208	ENST00000639496	NLRP13	Q86W25	1043 aa		12.92	□□□□□ -0.34
KCNQ3-208	ENST00000639496	B4GALNT3	Q6L9W6	998 aa		12.91	□□□□□ -0.34
KCNQ3-208	ENST00000639496	COG3	Q96JB2	828 aa		12.91	□□□□□ -0.34
KCNQ3-208	ENST00000639496	C1orf141	Q5JVX7	400 aa		12.9	□□□□□ -0.34
KCNQ3-208	ENST00000639496	RCAN3	Q9UKA8	241 aa		12.9	□□□□□ -0.34
KCNQ3-208	ENST00000639496	CCDC144A	A2RUR9	1427 aa		12.9	□□□□□ -0.34
KCNQ3-208	ENST00000639496	FAM69C	Q0P6D2	419 aa		12.9	□□□□□ -0.34
KCNQ3-208	ENST00000639496	SLC4A10	Q6U841	1118 aa		12.9	□□□□□ -0.35
KCNQ3-208	ENST00000639496	CHAF1A	Q13111	956 aa	Predicted RBP	12.89	□□□□□ -0.35
KCNQ3-208	ENST00000639496	EVC2	Q86UK5	1308 aa		12.89	□□□□□ -0.35
KCNQ3-208	ENST00000639496	TEF	Q10587	303 aa		12.88	□□□□□ -0.35

Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms