RNA–Protein interactions for RNA: ENST00000638142.2

SYNGAP1-227, Transcript of synaptic Ras GTPase activating protein 1, humanhuman

TSL 5

Gene SYNGAP1, Length 2,499 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1-227ENST00000638142 KIAA0556O60303 1618 aa27.86■■■□□ 2.05
SYNGAP1-227ENST00000638142 RBM19Q9Y4C8 960 aaKnown RBP27.86■■■□□ 2.05
SYNGAP1-227ENST00000638142 ABCC5O15440 1437 aa27.86■■■□□ 2.05
SYNGAP1-227ENST00000638142 CCDC7Q96M83 1385 aa27.85■■■□□ 2.05
SYNGAP1-227ENST00000638142 KIAA0586Q9BVV6 1533 aa27.85■■■□□ 2.05
SYNGAP1-227ENST00000638142 TEX14Q8IWB6 1497 aa27.84■■■□□ 2.05
SYNGAP1-227ENST00000638142 DISP1Q96F81 1524 aa27.83■■■□□ 2.05
SYNGAP1-227ENST00000638142 NUP153P49790 1475 aaKnown RBP27.81■■■□□ 2.04
SYNGAP1-227ENST00000638142 FOXD1Q16676 465 aa27.81■■■□□ 2.04
SYNGAP1-227ENST00000638142 IFT140Q96RY7 1462 aa27.81■■■□□ 2.04
SYNGAP1-227ENST00000638142 ARID3CA6NKF2 412 aa27.81■■■□□ 2.04
SYNGAP1-227ENST00000638142 RAPGEF6Q8TEU7 1601 aa27.79■■■□□ 2.04
SYNGAP1-227ENST00000638142 ERICH6BQ5W0A0 696 aa27.77■■■□□ 2.04
SYNGAP1-227ENST00000638142 PRKRIP1Q9H875 184 aaPredicted RBP27.77■■■□□ 2.04
SYNGAP1-227ENST00000638142 CDK11AQ9UQ88 783 aaPredicted RBP27.77■■■□□ 2.04
SYNGAP1-227ENST00000638142 POLR1AO95602 1720 aaPredicted RBP27.77■■■□□ 2.04
SYNGAP1-227ENST00000638142 C11orf95C9JLR9 678 aaPredicted RBP27.76■■■□□ 2.03
SYNGAP1-227ENST00000638142 SPATA31E1Q6ZUB1 1445 aa27.75■■■□□ 2.03
SYNGAP1-227ENST00000638142 NBPF8Q3BBV2 869 aa27.75■■■□□ 2.03
SYNGAP1-227ENST00000638142 ZNF608Q9ULD9 1512 aaPredicted RBP27.73■■■□□ 2.03
SYNGAP1-227ENST00000638142 SLC4A1APQ9BWU0 796 aaKnown RBP27.73■■■□□ 2.03
SYNGAP1-227ENST00000638142 ZNF644Q9H582 1327 aaPredicted RBP27.72■■■□□ 2.03
SYNGAP1-227ENST00000638142 CCDC184Q52MB2 194 aa27.69■■■□□ 2.02
SYNGAP1-227ENST00000638142 GRIN2AQ12879 1464 aa27.69■■■□□ 2.02
SYNGAP1-227ENST00000638142 TROQ12816 1431 aaPredicted RBP27.68■■■□□ 2.02
SYNGAP1-227ENST00000638142 ITSN2Q9NZM3 1697 aa27.68■■■□□ 2.02
SYNGAP1-227ENST00000638142 PZPP20742 1482 aa27.68■■■□□ 2.02
SYNGAP1-227ENST00000638142 KIF7Q2M1P5 1343 aa27.67■■■□□ 2.02
SYNGAP1-227ENST00000638142 ADGBQ8N7X0 1667 aa27.66■■■□□ 2.02
SYNGAP1-227ENST00000638142 CAMSAP2Q08AD1 1489 aa27.66■■■□□ 2.02
SYNGAP1-227ENST00000638142 MRS2Q9HD23 443 aa27.65■■■□□ 2.02
SYNGAP1-227ENST00000638142 ZBED9Q6R2W3 1325 aa27.65■■■□□ 2.02
SYNGAP1-227ENST00000638142 ADGRL2O95490 1459 aa27.62■■■□□ 2.01
SYNGAP1-227ENST00000638142 MBD5Q9P267 1494 aa27.62■■■□□ 2.01
SYNGAP1-227ENST00000638142 IRX6P78412 446 aaPredicted RBP27.62■■■□□ 2.01
SYNGAP1-227ENST00000638142 ADCY10Q96PN6 1610 aa27.61■■■□□ 2.01
SYNGAP1-227ENST00000638142 PRG4Q92954 1404 aaPredicted RBP27.6■■■□□ 2.01
SYNGAP1-227ENST00000638142 FAM9BQ8IZU0 186 aa27.6■■■□□ 2.01
SYNGAP1-227ENST00000638142 PPP4R2Q9NY27 417 aa27.59■■■□□ 2.01
SYNGAP1-227ENST00000638142 CFDP1Q9UEE9 299 aaPredicted RBP27.59■■■□□ 2.01
SYNGAP1-227ENST00000638142 EIF4G3O43432 1585 aaKnown RBP27.59■■■□□ 2.01
SYNGAP1-227ENST00000638142 GPATCH8Q9UKJ3 1502 aaKnown RBP27.59■■■□□ 2.01
SYNGAP1-227ENST00000638142 KIAA1107Q9UPP5 1409 aa27.59■■■□□ 2.01
SYNGAP1-227ENST00000638142 CROCC2H7BZ55 1655 aa27.58■■■□□ 2.01
SYNGAP1-227ENST00000638142 FANCIQ9NVI1 1328 aa27.54■■■□□ 2
SYNGAP1-227ENST00000638142 MAGI1Q96QZ7 1491 aaPredicted RBP27.52■■■□□ 2
SYNGAP1-227ENST00000638142 KIF14Q15058 1648 aa27.52■■■□□ 2
SYNGAP1-227ENST00000638142 ANKRD30AQ9BXX3 1397 aa27.51■■■□□ 2
SYNGAP1-227ENST00000638142 PLB1Q6P1J6 1458 aa27.51■■□□□ 1.99
SYNGAP1-227ENST00000638142 ARID4BQ4LE39 1312 aaPredicted RBP27.49■■□□□ 1.99
SYNGAP1-227ENST00000638142 DHX29Q7Z478 1369 aaKnown RBP27.49■■□□□ 1.99
SYNGAP1-227ENST00000638142 USP47Q96K76 1375 aa27.49■■□□□ 1.99
SYNGAP1-227ENST00000638142 MSH5O43196 834 aa27.48■■□□□ 1.99
SYNGAP1-227ENST00000638142 CEP170Q5SW79 1584 aa27.47■■□□□ 1.99
SYNGAP1-227ENST00000638142 BCL11AQ9H165 835 aa27.47■■□□□ 1.99
SYNGAP1-227ENST00000638142 KDM5CP41229 1560 aa27.45■■□□□ 1.99
SYNGAP1-227ENST00000638142 SYNJ2O15056 1496 aa27.45■■□□□ 1.99
SYNGAP1-227ENST00000638142 BCORL1Q5H9F3 1711 aa27.45■■□□□ 1.98
SYNGAP1-227ENST00000638142 CARMIL2Q6F5E8 1435 aa27.45■■□□□ 1.98
SYNGAP1-227ENST00000638142 ANKRD50Q9ULJ7 1429 aa27.45■■□□□ 1.98
SYNGAP1-227ENST00000638142 PKD2Q13563 968 aa27.45■■□□□ 1.98
SYNGAP1-227ENST00000638142 UHRF1BP1Q6BDS2 1440 aa27.43■■□□□ 1.98
SYNGAP1-227ENST00000638142 ZNF777Q9ULD5 760 aaPredicted RBP27.43■■□□□ 1.98
SYNGAP1-227ENST00000638142 SHANK2Q9UPX8 1470 aa27.43■■□□□ 1.98
SYNGAP1-227ENST00000638142 ERCC6Q03468 1493 aa27.42■■□□□ 1.98
SYNGAP1-227ENST00000638142 CHMP7Q8WUX9 453 aaPredicted RBP27.41■■□□□ 1.98
SYNGAP1-227ENST00000638142 SMG6Q86US8 1419 aaKnown RBP27.4■■□□□ 1.98
SYNGAP1-227ENST00000638142 RALGAPBQ86X10 1494 aa27.39■■□□□ 1.98
SYNGAP1-227ENST00000638142 ROCK2O75116 1388 aaKnown RBP27.39■■□□□ 1.98
SYNGAP1-227ENST00000638142 ARHGEF12Q9NZN5 1544 aa27.38■■□□□ 1.97
SYNGAP1-227ENST00000638142 CDC42BPAQ5VT25 1732 aa27.37■■□□□ 1.97
SYNGAP1-227ENST00000638142 NUP160Q12769 1436 aa27.37■■□□□ 1.97
SYNGAP1-227ENST00000638142 KDM5DQ9BY66 1539 aa27.36■■□□□ 1.97
SYNGAP1-227ENST00000638142 ZNF326Q5BKZ1 582 aaKnown RBP27.35■■□□□ 1.97
SYNGAP1-227ENST00000638142 C9orf84Q5VXU9 1444 aa27.34■■□□□ 1.97
SYNGAP1-227ENST00000638142 ABCC10Q5T3U5 1492 aa27.34■■□□□ 1.97
SYNGAP1-227ENST00000638142 ABCA8O94911 1581 aa27.32■■□□□ 1.96
SYNGAP1-227ENST00000638142 JPH4Q96JJ6 628 aa27.32■■□□□ 1.96
SYNGAP1-227ENST00000638142 NUP155O75694 1391 aa27.32■■□□□ 1.96
SYNGAP1-227ENST00000638142 B4GALNT3Q6L9W6 998 aa27.32■■□□□ 1.96
SYNGAP1-227ENST00000638142 PLEKHD1A6NEE1 506 aa27.31■■□□□ 1.96
SYNGAP1-227ENST00000638142 NUDCQ9Y266 331 aa27.3■■□□□ 1.96
SYNGAP1-227ENST00000638142 POLR3GLQ9BT43 218 aa27.28■■□□□ 1.96
SYNGAP1-227ENST00000638142 RNF123Q5XPI4 1314 aa27.27■■□□□ 1.96
SYNGAP1-227ENST00000638142 PTPRGP23470 1445 aa27.26■■□□□ 1.95
SYNGAP1-227ENST00000638142 ATP10BO94823 1461 aa27.26■■□□□ 1.95
SYNGAP1-227ENST00000638142 CARD11Q9BXL7 1154 aa27.25■■□□□ 1.95
SYNGAP1-227ENST00000638142 ARHGEF5Q12774 1597 aa27.24■■□□□ 1.95
SYNGAP1-227ENST00000638142 KIF15Q9NS87 1388 aa27.24■■□□□ 1.95
SYNGAP1-227ENST00000638142 TSPY4P0CV99 314 aa27.24■■□□□ 1.95
SYNGAP1-227ENST00000638142 TSPY10P0CW01 314 aa27.24■■□□□ 1.95
SYNGAP1-227ENST00000638142 FBLN2P98095 1184 aa27.23■■□□□ 1.95
SYNGAP1-227ENST00000638142 ERICH6Q7L0X2 663 aa27.23■■□□□ 1.95
SYNGAP1-227ENST00000638142 PNISRQ8TF01 805 aaKnown RBP27.23■■□□□ 1.95
SYNGAP1-227ENST00000638142 KTN1Q86UP2 1357 aaKnown RBP27.22■■□□□ 1.95
SYNGAP1-227ENST00000638142 TMC1Q8TDI8 760 aa27.19■■□□□ 1.94
SYNGAP1-227ENST00000638142 CNGB1Q14028 1251 aaPredicted RBP27.17■■□□□ 1.94
SYNGAP1-227ENST00000638142 BRD4O60885 1362 aaPredicted RBP27.16■■□□□ 1.94
SYNGAP1-227ENST00000638142 LRPPRCP42704 1394 aaKnown RBP27.15■■□□□ 1.94
SYNGAP1-227ENST00000638142 E9PCH4 1651 aa27.15■■□□□ 1.94
Retrieved 100 of 20,778 RNA–protein pairs in 62 ms