RNA–Protein interactions for RNA: ENST00000637871.1

CLN3-263, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,606 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-263ENST00000637871 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP27.27■■□□□ 1.96
CLN3-263ENST00000637871 PREX2Q70Z35 1606 aa27.26■■□□□ 1.95
CLN3-263ENST00000637871 CDC42BPBQ9Y5S2 1711 aa27.26■■□□□ 1.95
CLN3-263ENST00000637871 GPATCH8Q9UKJ3 1502 aaKnown RBP27.24■■□□□ 1.95
CLN3-263ENST00000637871 PLCH2O75038 1416 aa27.22■■□□□ 1.95
CLN3-263ENST00000637871 ARHGAP5Q13017 1502 aa27.22■■□□□ 1.95
CLN3-263ENST00000637871 PHLDB1Q86UU1 1377 aa27.2■■□□□ 1.94
CLN3-263ENST00000637871 ITSN2Q9NZM3 1697 aa27.19■■□□□ 1.94
CLN3-263ENST00000637871 FANCAO15360 1455 aa27.18■■□□□ 1.94
CLN3-263ENST00000637871 TEX14Q8IWB6 1497 aa27.17■■□□□ 1.94
CLN3-263ENST00000637871 ARAP3Q8WWN8 1544 aa27.14■■□□□ 1.94
CLN3-263ENST00000637871 CFAP74Q9C0B2 1584 aa27.12■■□□□ 1.93
CLN3-263ENST00000637871 MYOM3Q5VTT5 1437 aa27.12■■□□□ 1.93
CLN3-263ENST00000637871 ZNF777Q9ULD5 760 aaPredicted RBP27.12■■□□□ 1.93
CLN3-263ENST00000637871 SAMD9LQ8IVG5 1584 aa27.11■■□□□ 1.93
CLN3-263ENST00000637871 CFDP1Q9UEE9 299 aaPredicted RBP27.11■■□□□ 1.93
CLN3-263ENST00000637871 NEO1Q92859 1461 aa27.1■■□□□ 1.93
CLN3-263ENST00000637871 AKNAQ7Z591 1439 aa27.09■■□□□ 1.93
CLN3-263ENST00000637871 EFCAB2Q5VUJ9 269 aa27.08■■□□□ 1.93
CLN3-263ENST00000637871 ZNF644Q9H582 1327 aaPredicted RBP27.08■■□□□ 1.93
CLN3-263ENST00000637871 DHX57Q6P158 1386 aaKnown RBP27.07■■□□□ 1.92
CLN3-263ENST00000637871 COL17A1Q9UMD9 1497 aaPredicted RBP27.06■■□□□ 1.92
CLN3-263ENST00000637871 ADGRL1O94910 1474 aa27.05■■□□□ 1.92
CLN3-263ENST00000637871 KDM6BO15054 1643 aa27.04■■□□□ 1.92
CLN3-263ENST00000637871 ABCC1P33527 1531 aa27.04■■□□□ 1.92
CLN3-263ENST00000637871 FGD6Q6ZV73 1430 aa27.04■■□□□ 1.92
CLN3-263ENST00000637871 CAMSAP2Q08AD1 1489 aa27.03■■□□□ 1.92
CLN3-263ENST00000637871 SYCP2Q9BX26 1530 aa27.03■■□□□ 1.92
CLN3-263ENST00000637871 ARHGEF12Q9NZN5 1544 aa27.02■■□□□ 1.92
CLN3-263ENST00000637871 PTPN23Q9H3S7 1636 aa27.01■■□□□ 1.91
CLN3-263ENST00000637871 SETD5Q9C0A6 1442 aa27.01■■□□□ 1.91
CLN3-263ENST00000637871 SCAPERQ9BY12 1400 aa27■■□□□ 1.91
CLN3-263ENST00000637871 MIA2Q96PC5 1412 aa26.99■■□□□ 1.91
CLN3-263ENST00000637871 FAM50AQ14320 339 aaKnown RBP26.98■■□□□ 1.91
CLN3-263ENST00000637871 FRMPD1Q5SYB0 1578 aa26.98■■□□□ 1.91
CLN3-263ENST00000637871 RAPGEF3O95398 923 aa26.97■■□□□ 1.91
CLN3-263ENST00000637871 RICTORQ6R327 1708 aa26.96■■□□□ 1.91
CLN3-263ENST00000637871 HNRNPMP52272 730 aaKnown RBP eCLIP26.96■■□□□ 1.91
CLN3-263ENST00000637871 DENND4BO75064 1496 aaPredicted RBP26.95■■□□□ 1.9
CLN3-263ENST00000637871 TRAPPC8Q9Y2L5 1435 aa26.94■■□□□ 1.9
CLN3-263ENST00000637871 POGZQ7Z3K3 1410 aa26.93■■□□□ 1.9
CLN3-263ENST00000637871 RAB3GAP2Q9H2M9 1393 aa26.93■■□□□ 1.9
CLN3-263ENST00000637871 ITGAEP38570 1179 aa26.91■■□□□ 1.9
CLN3-263ENST00000637871 TCOF1Q13428 1488 aaKnown RBP26.91■■□□□ 1.9
CLN3-263ENST00000637871 PLEKHH2Q8IVE3 1493 aa26.91■■□□□ 1.9
CLN3-263ENST00000637871 MBD5Q9P267 1494 aa26.9■■□□□ 1.9
CLN3-263ENST00000637871 AFAP1Q8N556 730 aa26.9■■□□□ 1.9
CLN3-263ENST00000637871 KIAA1107Q9UPP5 1409 aa26.89■■□□□ 1.89
CLN3-263ENST00000637871 ZNF316A6NFI3 1004 aaPredicted RBP26.88■■□□□ 1.89
CLN3-263ENST00000637871 ZNF518AQ6AHZ1 1483 aa26.86■■□□□ 1.89
CLN3-263ENST00000637871 KDM5CP41229 1560 aa26.84■■□□□ 1.89
CLN3-263ENST00000637871 ARHGEF5Q12774 1597 aa26.84■■□□□ 1.89
CLN3-263ENST00000637871 CCDC141Q6ZP82 1450 aa26.82■■□□□ 1.88
CLN3-263ENST00000637871 DNMT1P26358 1616 aaKnown RBP26.81■■□□□ 1.88
CLN3-263ENST00000637871 ZMYM4Q5VZL5 1548 aa26.8■■□□□ 1.88
CLN3-263ENST00000637871 CROCC2H7BZ55 1655 aa26.8■■□□□ 1.88
CLN3-263ENST00000637871 HECW2Q9P2P5 1572 aa26.79■■□□□ 1.88
CLN3-263ENST00000637871 ACIN1Q9UKV3 1341 aaKnown RBP26.79■■□□□ 1.88
CLN3-263ENST00000637871 ABCC5O15440 1437 aa26.78■■□□□ 1.88
CLN3-263ENST00000637871 DAPK1P53355 1430 aa26.78■■□□□ 1.88
CLN3-263ENST00000637871 YEATS2Q9ULM3 1422 aa26.77■■□□□ 1.88
CLN3-263ENST00000637871 INO80Q9ULG1 1556 aaPredicted RBP26.76■■□□□ 1.87
CLN3-263ENST00000637871 ZFYVE16Q7Z3T8 1539 aa26.76■■□□□ 1.87
CLN3-263ENST00000637871 HFM1A2PYH4 1435 aa26.75■■□□□ 1.87
CLN3-263ENST00000637871 KIDINS220Q9ULH0 1771 aa26.75■■□□□ 1.87
CLN3-263ENST00000637871 DIEXFQ68CQ4 756 aaKnown RBP26.75■■□□□ 1.87
CLN3-263ENST00000637871 MYT1LQ9UL68 1186 aa26.75■■□□□ 1.87
CLN3-263ENST00000637871 TIMELESSQ9UNS1 1208 aa26.75■■□□□ 1.87
CLN3-263ENST00000637871 SPAG9O60271 1321 aaKnown RBP26.73■■□□□ 1.87
CLN3-263ENST00000637871 ATP7AQ04656 1500 aa26.73■■□□□ 1.87
CLN3-263ENST00000637871 ABCA6Q8N139 1617 aa26.72■■□□□ 1.87
CLN3-263ENST00000637871 ARHGEF40Q8TER5 1519 aa26.72■■□□□ 1.87
CLN3-263ENST00000637871 PTPRKQ15262 1439 aa26.71■■□□□ 1.87
CLN3-263ENST00000637871 C9orf84Q5VXU9 1444 aa26.71■■□□□ 1.87
CLN3-263ENST00000637871 MLH3Q9UHC1 1453 aa26.71■■□□□ 1.87
CLN3-263ENST00000637871 CHIC2Q9UKJ5 165 aa26.69■■□□□ 1.86
CLN3-263ENST00000637871 DIP2CQ9Y2E4 1556 aa26.69■■□□□ 1.86
CLN3-263ENST00000637871 MAST1Q9Y2H9 1570 aa26.68■■□□□ 1.86
CLN3-263ENST00000637871 RSPH4AQ5TD94 716 aa26.67■■□□□ 1.86
CLN3-263ENST00000637871 SHANK2Q9UPX8 1470 aa26.67■■□□□ 1.86
CLN3-263ENST00000637871 TSPY4P0CV99 314 aa26.66■■□□□ 1.86
CLN3-263ENST00000637871 TSPY10P0CW01 314 aa26.66■■□□□ 1.86
CLN3-263ENST00000637871 MAGI2Q86UL8 1455 aa26.66■■□□□ 1.86
CLN3-263ENST00000637871 SIGLEC1Q9BZZ2 1709 aa26.65■■□□□ 1.86
CLN3-263ENST00000637871 ADGBQ8N7X0 1667 aa26.64■■□□□ 1.86
CLN3-263ENST00000637871 RTEL1-TNFRSF6BF6WH68 1400 aa26.62■■□□□ 1.85
CLN3-263ENST00000637871 NAIPQ13075 1403 aa26.61■■□□□ 1.85
CLN3-263ENST00000637871 PLXNC1O60486 1568 aa26.59■■□□□ 1.85
CLN3-263ENST00000637871 ATP10AO60312 1499 aa26.57■■□□□ 1.84
CLN3-263ENST00000637871 ADGRL2O95490 1459 aa26.56■■□□□ 1.84
CLN3-263ENST00000637871 RRP7BPQ9NSQ0 103 aa26.56■■□□□ 1.84
CLN3-263ENST00000637871 ROCK1Q13464 1354 aa26.55■■□□□ 1.84
CLN3-263ENST00000637871 KIF15Q9NS87 1388 aa26.54■■□□□ 1.84
CLN3-263ENST00000637871 NCOA1Q15788 1441 aa26.54■■□□□ 1.84
CLN3-263ENST00000637871 A2MP01023 1474 aa26.53■■□□□ 1.84
CLN3-263ENST00000637871 ANKRD30AQ9BXX3 1397 aa26.53■■□□□ 1.84
CLN3-263ENST00000637871 GCC2Q8IWJ2 1684 aa26.5■■□□□ 1.83
CLN3-263ENST00000637871 REREQ9P2R6 1566 aa26.49■■□□□ 1.83
CLN3-263ENST00000637871 DUOX2Q9NRD8 1548 aa26.47■■□□□ 1.83
CLN3-263ENST00000637871 ARID4BQ4LE39 1312 aaPredicted RBP26.46■■□□□ 1.83
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms