RNA–Protein interactions for RNA: ENST00000635973.1

CLN3-243, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,084 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-243ENST00000635973 PCF11O94913 1555 aaKnown RBP28.91■■■□□ 2.22
CLN3-243ENST00000635973 BCORL1Q5H9F3 1711 aa28.91■■■□□ 2.22
CLN3-243ENST00000635973 CASKIN1Q8WXD9 1431 aa28.9■■■□□ 2.22
CLN3-243ENST00000635973 PTPRMP28827 1452 aa28.9■■■□□ 2.22
CLN3-243ENST00000635973 CCDC18Q5T9S5 1454 aa28.9■■■□□ 2.22
CLN3-243ENST00000635973 ZMYM4Q5VZL5 1548 aa28.89■■■□□ 2.22
CLN3-243ENST00000635973 ZFYVE16Q7Z3T8 1539 aa28.88■■■□□ 2.21
CLN3-243ENST00000635973 MAGI2Q86UL8 1455 aa28.86■■■□□ 2.21
CLN3-243ENST00000635973 ARHGAP5Q13017 1502 aa28.86■■■□□ 2.21
CLN3-243ENST00000635973 POGZQ7Z3K3 1410 aa28.85■■■□□ 2.21
CLN3-243ENST00000635973 MADDQ8WXG6 1647 aa28.83■■■□□ 2.21
CLN3-243ENST00000635973 FYCO1Q9BQS8 1478 aa28.81■■■□□ 2.2
CLN3-243ENST00000635973 YEATS2Q9ULM3 1422 aa28.8■■■□□ 2.2
CLN3-243ENST00000635973 MYT1LQ9UL68 1186 aa28.78■■■□□ 2.2
CLN3-243ENST00000635973 CDC42BPBQ9Y5S2 1711 aa28.77■■■□□ 2.2
CLN3-243ENST00000635973 RIMS1Q86UR5 1692 aaKnown RBP28.77■■■□□ 2.2
CLN3-243ENST00000635973 ZNF518AQ6AHZ1 1483 aa28.74■■■□□ 2.19
CLN3-243ENST00000635973 PREX2Q70Z35 1606 aa28.72■■■□□ 2.19
CLN3-243ENST00000635973 MLECQ14165 292 aa28.72■■■□□ 2.19
CLN3-243ENST00000635973 ATP10AO60312 1499 aa28.71■■■□□ 2.19
CLN3-243ENST00000635973 VPS8Q8N3P4 1428 aa28.69■■■□□ 2.18
CLN3-243ENST00000635973 PLPPR3Q6T4P5 718 aa28.69■■■□□ 2.18
CLN3-243ENST00000635973 SIGLEC1Q9BZZ2 1709 aa28.69■■■□□ 2.18
CLN3-243ENST00000635973 AFAP1Q8N556 730 aa28.68■■■□□ 2.18
CLN3-243ENST00000635973 C9orf84Q5VXU9 1444 aa28.68■■■□□ 2.18
CLN3-243ENST00000635973 CDC42BPAQ5VT25 1732 aa28.67■■■□□ 2.18
CLN3-243ENST00000635973 FER1L4A9Z1Z3 1794 aa28.66■■■□□ 2.18
CLN3-243ENST00000635973 KDM5CP41229 1560 aa28.65■■■□□ 2.18
CLN3-243ENST00000635973 LMTK3Q96Q04 1460 aa28.65■■■□□ 2.18
CLN3-243ENST00000635973 ITSN2Q9NZM3 1697 aa28.61■■■□□ 2.17
CLN3-243ENST00000635973 ABCC1P33527 1531 aa28.61■■■□□ 2.17
CLN3-243ENST00000635973 ZNF777Q9ULD5 760 aaPredicted RBP28.61■■■□□ 2.17
CLN3-243ENST00000635973 MTUS2Q5JR59 1369 aa28.57■■■□□ 2.16
CLN3-243ENST00000635973 MLH3Q9UHC1 1453 aa28.55■■■□□ 2.16
CLN3-243ENST00000635973 TRAPPC8Q9Y2L5 1435 aa28.55■■■□□ 2.16
CLN3-243ENST00000635973 DIP2CQ9Y2E4 1556 aa28.54■■■□□ 2.16
CLN3-243ENST00000635973 ARHGEF12Q9NZN5 1544 aa28.53■■■□□ 2.16
CLN3-243ENST00000635973 CCNB3Q8WWL7 1395 aa28.52■■■□□ 2.16
CLN3-243ENST00000635973 ABCA6Q8N139 1617 aa28.52■■■□□ 2.16
CLN3-243ENST00000635973 GPATCH8Q9UKJ3 1502 aaKnown RBP28.52■■■□□ 2.16
CLN3-243ENST00000635973 HSPA2P54652 639 aa28.5■■■□□ 2.15
CLN3-243ENST00000635973 FBXO41Q8TF61 875 aa28.5■■■□□ 2.15
CLN3-243ENST00000635973 CFDP1Q9UEE9 299 aaPredicted RBP28.5■■■□□ 2.15
CLN3-243ENST00000635973 SAMD9LQ8IVG5 1584 aa28.5■■■□□ 2.15
CLN3-243ENST00000635973 REREQ9P2R6 1566 aa28.5■■■□□ 2.15
CLN3-243ENST00000635973 ESF1Q9H501 851 aaKnown RBP28.46■■■□□ 2.15
CLN3-243ENST00000635973 SYCP2Q9BX26 1530 aa28.46■■■□□ 2.15
CLN3-243ENST00000635973 KIDINS220Q9ULH0 1771 aa28.46■■■□□ 2.15
CLN3-243ENST00000635973 TIAM1Q13009 1591 aa28.45■■■□□ 2.15
CLN3-243ENST00000635973 PLEKHH2Q8IVE3 1493 aa28.45■■■□□ 2.14
CLN3-243ENST00000635973 EHBP1L1Q8N3D4 1523 aa28.44■■■□□ 2.14
CLN3-243ENST00000635973 HNRNPMP52272 730 aaKnown RBP eCLIP28.44■■■□□ 2.14
CLN3-243ENST00000635973 APLP2Q06481 763 aa28.44■■■□□ 2.14
CLN3-243ENST00000635973 SPAG9O60271 1321 aaKnown RBP28.43■■■□□ 2.14
CLN3-243ENST00000635973 AGLP35573 1532 aa28.4■■■□□ 2.14
CLN3-243ENST00000635973 CEBPAP49715 358 aaPredicted RBP28.4■■■□□ 2.14
CLN3-243ENST00000635973 KIAA1107Q9UPP5 1409 aa28.39■■■□□ 2.14
CLN3-243ENST00000635973 PREX1Q8TCU6 1659 aa28.38■■■□□ 2.13
CLN3-243ENST00000635973 MAP3K1Q13233 1512 aa28.37■■■□□ 2.13
CLN3-243ENST00000635973 ATP7AQ04656 1500 aa28.33■■■□□ 2.13
CLN3-243ENST00000635973 SUPT6HQ7KZ85 1726 aaKnown RBP28.33■■■□□ 2.13
CLN3-243ENST00000635973 SETD1BQ9UPS6 1966 aaKnown RBP28.33■■■□□ 2.13
CLN3-243ENST00000635973 LRRC9Q6ZRR7 1453 aa28.33■■■□□ 2.13
CLN3-243ENST00000635973 C3P01024 1663 aa28.31■■■□□ 2.12
CLN3-243ENST00000635973 INO80Q9ULG1 1556 aaPredicted RBP28.29■■■□□ 2.12
CLN3-243ENST00000635973 CNTLNQ9NXG0 1405 aa28.27■■■□□ 2.12
CLN3-243ENST00000635973 ZNF644Q9H582 1327 aaPredicted RBP28.27■■■□□ 2.12
CLN3-243ENST00000635973 UHRF1BP1Q6BDS2 1440 aa28.26■■■□□ 2.12
CLN3-243ENST00000635973 KANK4Q5T7N3 995 aaPredicted RBP28.26■■■□□ 2.11
CLN3-243ENST00000635973 NCOA2Q15596 1464 aa28.25■■■□□ 2.11
CLN3-243ENST00000635973 A2MP01023 1474 aa28.24■■■□□ 2.11
CLN3-243ENST00000635973 ADGBQ8N7X0 1667 aa28.23■■■□□ 2.11
CLN3-243ENST00000635973 MROH2AA6NES4 1674 aa28.19■■■□□ 2.1
CLN3-243ENST00000635973 MBD5Q9P267 1494 aa28.19■■■□□ 2.1
CLN3-243ENST00000635973 PLXNC1O60486 1568 aa28.18■■■□□ 2.1
CLN3-243ENST00000635973 GGT6Q6P531 493 aa28.17■■■□□ 2.1
CLN3-243ENST00000635973 CERKQ8TCT0 537 aa28.17■■■□□ 2.1
CLN3-243ENST00000635973 CAMSAP2Q08AD1 1489 aa28.16■■■□□ 2.1
CLN3-243ENST00000635973 CLTCQ00610 1675 aaKnown RBP28.16■■■□□ 2.1
CLN3-243ENST00000635973 RSPH4AQ5TD94 716 aa28.15■■■□□ 2.1
CLN3-243ENST00000635973 DMRT2Q9Y5R5 561 aa28.15■■■□□ 2.1
CLN3-243ENST00000635973 RTEL1-TNFRSF6BF6WH68 1400 aa28.15■■■□□ 2.1
CLN3-243ENST00000635973 CCDC141Q6ZP82 1450 aa28.14■■■□□ 2.09
CLN3-243ENST00000635973 ZMYM3Q14202 1370 aa28.12■■■□□ 2.09
CLN3-243ENST00000635973 STRCQ7RTU9 1775 aa28.09■■■□□ 2.09
CLN3-243ENST00000635973 NPATQ14207 1427 aa28.09■■■□□ 2.09
CLN3-243ENST00000635973 TSPY4P0CV99 314 aa28.08■■■□□ 2.09
CLN3-243ENST00000635973 TSPY10P0CW01 314 aa28.08■■■□□ 2.09
CLN3-243ENST00000635973 PPP6R1Q9UPN7 881 aa28.08■■■□□ 2.09
CLN3-243ENST00000635973 DHX29Q7Z478 1369 aaKnown RBP28.06■■■□□ 2.08
CLN3-243ENST00000635973 ARHGEF5Q12774 1597 aa28.04■■■□□ 2.08
CLN3-243ENST00000635973 MYOM3Q5VTT5 1437 aa28.02■■■□□ 2.08
CLN3-243ENST00000635973 KIF3BO15066 747 aa28.02■■■□□ 2.08
CLN3-243ENST00000635973 PPARGC1BQ86YN6 1023 aaKnown RBP27.98■■■□□ 2.07
CLN3-243ENST00000635973 PTPRTO14522 1441 aa27.97■■■□□ 2.07
CLN3-243ENST00000635973 MIA2Q96PC5 1412 aa27.96■■■□□ 2.07
CLN3-243ENST00000635973 MYO3AQ8NEV4 1616 aa27.96■■■□□ 2.07
CLN3-243ENST00000635973 PTPRKQ15262 1439 aa27.95■■■□□ 2.07
CLN3-243ENST00000635973 CAMSAP1Q5T5Y3 1602 aa27.95■■■□□ 2.06
CLN3-243ENST00000635973 NCOA1Q15788 1441 aa27.92■■■□□ 2.06
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms