RNA–Protein interactions for RNA: ENST00000629293.1

LINC00550-201, long intergenic non-protein coding RNA 550, humanhuman

TSL 1 (best) BASIC

Gene LINC00550, Length 3,434 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00550-201ENST00000629293 CD109Q6YHK3 1445 aa7.99□□□□□ -1.13
LINC00550-201ENST00000629293 TEX14Q8IWB6 1497 aa7.99□□□□□ -1.13
LINC00550-201ENST00000629293 UHRF1BP1LA0JNW5 1464 aa7.99□□□□□ -1.13
LINC00550-201ENST00000629293 KDM5BQ9UGL1 1544 aa7.98□□□□□ -1.13
LINC00550-201ENST00000629293 WDR7Q9Y4E6 1490 aa7.98□□□□□ -1.13
LINC00550-201ENST00000629293 CFAP44Q96MT7 982 aa7.97□□□□□ -1.13
LINC00550-201ENST00000629293 RAPGEF3O95398 923 aa7.97□□□□□ -1.13
LINC00550-201ENST00000629293 RNF39Q9H2S5 420 aa7.97□□□□□ -1.13
LINC00550-201ENST00000629293 ZBTB4Q9P1Z0 1013 aaPredicted RBP7.97□□□□□ -1.13
LINC00550-201ENST00000629293 KIAA0556O60303 1618 aa7.97□□□□□ -1.13
LINC00550-201ENST00000629293 ZCCHC11Q5TAX3 1644 aaKnown RBP7.97□□□□□ -1.13
LINC00550-201ENST00000629293 UGGT2Q9NYU1 1516 aa7.96□□□□□ -1.13
LINC00550-201ENST00000629293 ATP1B4Q9UN42 357 aaPredicted RBP7.96□□□□□ -1.14
LINC00550-201ENST00000629293 GLI2P10070 1586 aa7.96□□□□□ -1.14
LINC00550-201ENST00000629293 PPRC1Q5VV67 1664 aaKnown RBP7.95□□□□□ -1.14
LINC00550-201ENST00000629293 GOLGA3Q08378 1498 aa7.94□□□□□ -1.14
LINC00550-201ENST00000629293 SSUH2Q9Y2M2 353 aa7.94□□□□□ -1.14
LINC00550-201ENST00000629293 HECW2Q9P2P5 1572 aa7.93□□□□□ -1.14
LINC00550-201ENST00000629293 MLECQ14165 292 aa7.92□□□□□ -1.14
LINC00550-201ENST00000629293 SPRYD3Q8NCJ5 442 aa7.92□□□□□ -1.14
LINC00550-201ENST00000629293 MAP3K4Q9Y6R4 1608 aa7.92□□□□□ -1.14
LINC00550-201ENST00000629293 RNF25Q96BH1 459 aaPredicted RBP7.9□□□□□ -1.15
LINC00550-201ENST00000629293 PLEKHD1A6NEE1 506 aa7.89□□□□□ -1.15
LINC00550-201ENST00000629293 HSPA2P54652 639 aa7.89□□□□□ -1.15
LINC00550-201ENST00000629293 MYT1LQ9UL68 1186 aa7.89□□□□□ -1.15
LINC00550-201ENST00000629293 TIMELESSQ9UNS1 1208 aa7.89□□□□□ -1.15
LINC00550-201ENST00000629293 ATP10BO94823 1461 aa7.89□□□□□ -1.15
LINC00550-201ENST00000629293 PRXQ9BXM0 1461 aa7.89□□□□□ -1.15
LINC00550-201ENST00000629293 MAGI3Q5TCQ9 1506 aa7.89□□□□□ -1.15
LINC00550-201ENST00000629293 STAG3Q9UJ98 1225 aa7.88□□□□□ -1.15
LINC00550-201ENST00000629293 ABCA8O94911 1581 aa7.88□□□□□ -1.15
LINC00550-201ENST00000629293 FHOD3Q2V2M9 1422 aa7.88□□□□□ -1.15
LINC00550-201ENST00000629293 UBTFP17480 764 aaKnown RBP7.88□□□□□ -1.15
LINC00550-201ENST00000629293 CTTNBP2Q8WZ74 1663 aa7.87□□□□□ -1.15
LINC00550-201ENST00000629293 KIF21BO75037 1637 aa7.87□□□□□ -1.15
LINC00550-201ENST00000629293 NKX1-1Q15270 411 aaPredicted RBP7.87□□□□□ -1.15
LINC00550-201ENST00000629293 KLHL34Q8N239 644 aa7.87□□□□□ -1.15
LINC00550-201ENST00000629293 CAPN15O75808 1086 aa7.86□□□□□ -1.15
LINC00550-201ENST00000629293 HS6ST3Q8IZP7 471 aa7.85□□□□□ -1.15
LINC00550-201ENST00000629293 ZBTB12Q9Y330 459 aaPredicted RBP7.85□□□□□ -1.15
LINC00550-201ENST00000629293 CFAP43Q8NDM7 1665 aa7.85□□□□□ -1.15
LINC00550-201ENST00000629293 ABCB7O75027 752 aa7.85□□□□□ -1.15
LINC00550-201ENST00000629293 FBXO41Q8TF61 875 aa7.85□□□□□ -1.15
LINC00550-201ENST00000629293 PTPRMP28827 1452 aa7.84□□□□□ -1.15
LINC00550-201ENST00000629293 CHGAP10645 457 aaKnown RBP7.83□□□□□ -1.16
LINC00550-201ENST00000629293 ARAP3Q8WWN8 1544 aa7.82□□□□□ -1.16
LINC00550-201ENST00000629293 ZNF692Q9BU19 519 aaPredicted RBP7.82□□□□□ -1.16
LINC00550-201ENST00000629293 NUP153P49790 1475 aaKnown RBP7.81□□□□□ -1.16
LINC00550-201ENST00000629293 CEBPAP49715 358 aaPredicted RBP7.81□□□□□ -1.16
LINC00550-201ENST00000629293 DENND4BO75064 1496 aaPredicted RBP7.81□□□□□ -1.16
LINC00550-201ENST00000629293 RAPGEF6Q8TEU7 1601 aa7.8□□□□□ -1.16
LINC00550-201ENST00000629293 PHLDB1Q86UU1 1377 aa7.8□□□□□ -1.16
LINC00550-201ENST00000629293 FANCAO15360 1455 aa7.8□□□□□ -1.16
LINC00550-201ENST00000629293 AKNAQ7Z591 1439 aa7.8□□□□□ -1.16
LINC00550-201ENST00000629293 NEO1Q92859 1461 aa7.79□□□□□ -1.16
LINC00550-201ENST00000629293 DSG3P32926 999 aa7.79□□□□□ -1.16
LINC00550-201ENST00000629293 YEATS2Q9ULM3 1422 aa7.79□□□□□ -1.16
LINC00550-201ENST00000629293 SPDYE2BA6NHP3 402 aa7.78□□□□□ -1.16
LINC00550-201ENST00000629293 SPDYE6P0CI01 402 aa7.78□□□□□ -1.16
LINC00550-201ENST00000629293 SPDYE2Q495Y8 402 aa7.78□□□□□ -1.16
LINC00550-201ENST00000629293 ABCA9Q8IUA7 1624 aa7.78□□□□□ -1.16
LINC00550-201ENST00000629293 MADDQ8WXG6 1647 aa7.78□□□□□ -1.16
LINC00550-201ENST00000629293 C1QBPQ07021 282 aaKnown RBP7.78□□□□□ -1.16
LINC00550-201ENST00000629293 CDK13Q14004 1512 aaKnown RBP7.78□□□□□ -1.16
LINC00550-201ENST00000629293 SCAPERQ9BY12 1400 aa7.78□□□□□ -1.16
LINC00550-201ENST00000629293 GTPBP6O43824 516 aaPredicted RBP7.78□□□□□ -1.16
LINC00550-201ENST00000629293 PLCD3Q8N3E9 789 aa7.78□□□□□ -1.16
LINC00550-201ENST00000629293 CDK11AQ9UQ88 783 aaPredicted RBP7.77□□□□□ -1.17
LINC00550-201ENST00000629293 POGZQ7Z3K3 1410 aa7.77□□□□□ -1.17
LINC00550-201ENST00000629293 EFCAB2Q5VUJ9 269 aa7.77□□□□□ -1.17
LINC00550-201ENST00000629293 AFAP1Q8N556 730 aa7.77□□□□□ -1.17
LINC00550-201ENST00000629293 ESF1Q9H501 851 aaKnown RBP7.77□□□□□ -1.17
LINC00550-201ENST00000629293 ZNF777Q9ULD5 760 aaPredicted RBP7.76□□□□□ -1.17
LINC00550-201ENST00000629293 PCF11O94913 1555 aaKnown RBP7.76□□□□□ -1.17
LINC00550-201ENST00000629293 SAMD9Q5K651 1589 aa7.76□□□□□ -1.17
LINC00550-201ENST00000629293 LMTK3Q96Q04 1460 aa7.76□□□□□ -1.17
LINC00550-201ENST00000629293 MIER1Q8N108 512 aa7.75□□□□□ -1.17
LINC00550-201ENST00000629293 RIMS1Q86UR5 1692 aaKnown RBP7.75□□□□□ -1.17
LINC00550-201ENST00000629293 ADAMTSL3P82987 1691 aa7.74□□□□□ -1.17
LINC00550-201ENST00000629293 TULP1O00294 542 aaPredicted RBP7.74□□□□□ -1.17
LINC00550-201ENST00000629293 CERKQ8TCT0 537 aa7.74□□□□□ -1.17
LINC00550-201ENST00000629293 FRMPD1Q5SYB0 1578 aa7.74□□□□□ -1.17
LINC00550-201ENST00000629293 EEA1Q15075 1411 aa7.74□□□□□ -1.17
LINC00550-201ENST00000629293 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP7.74□□□□□ -1.17
LINC00550-201ENST00000629293 BCORL1Q5H9F3 1711 aa7.73□□□□□ -1.17
LINC00550-201ENST00000629293 TTC37Q6PGP7 1564 aa7.73□□□□□ -1.17
LINC00550-201ENST00000629293 NUBP1P53384 320 aa7.73□□□□□ -1.17
LINC00550-201ENST00000629293 ZFYVE16Q7Z3T8 1539 aa7.73□□□□□ -1.17
LINC00550-201ENST00000629293 ARHGEF40Q8TER5 1519 aa7.72□□□□□ -1.17
LINC00550-201ENST00000629293 CIZ1Q9ULV3 898 aaPredicted RBP7.72□□□□□ -1.17
LINC00550-201ENST00000629293 PLCH2O75038 1416 aa7.71□□□□□ -1.18
LINC00550-201ENST00000629293 DISP3Q9P2K9 1392 aa7.71□□□□□ -1.18
LINC00550-201ENST00000629293 GTF3C3Q9Y5Q9 886 aa7.71□□□□□ -1.18
LINC00550-201ENST00000629293 HECW1Q76N89 1606 aa7.71□□□□□ -1.18
LINC00550-201ENST00000629293 FMN1Q68DA7 1419 aa7.7□□□□□ -1.18
LINC00550-201ENST00000629293 ARHGAP5Q13017 1502 aa7.7□□□□□ -1.18
LINC00550-201ENST00000629293 EFCAB5A4FU69 1503 aa7.7□□□□□ -1.18
LINC00550-201ENST00000629293 RICTORQ6R327 1708 aa7.69□□□□□ -1.18
LINC00550-201ENST00000629293 NBR1Q14596 966 aa7.69□□□□□ -1.18
LINC00550-201ENST00000629293 ATP10AO60312 1499 aa7.69□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms